H2BC16P (H2B clustered histone 16, pseudogene) - Rat Genome Database

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Gene: H2BC16P (H2B clustered histone 16, pseudogene) Homo sapiens
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Symbol: H2BC16P
Name: H2B clustered histone 16, pseudogene
RGD ID: 1348661
HGNC Page HGNC:4754
Description: Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the small histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: H2BFIP; HIST1H2BPS2; histone cluster 1 H2B pseudogene 2; histone cluster 1, H2b, pseudogene 2; pH2B.i; pH2B/i
Related Functional Gene: H2BC8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,864,062 - 27,864,401 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,864,062 - 27,864,401 (-)EnsemblGRCh38hg38GRCh38
GRCh37627,831,840 - 27,832,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,939,819 - 27,940,158 (-)NCBINCBI36Build 36hg18NCBI36
Celera629,437,878 - 29,438,217 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,639,524 - 27,639,863 (-)NCBIHuRef
CHM1_1627,834,017 - 27,834,356 (-)NCBICHM1_1
T2T-CHM13v2.0627,733,733 - 27,734,072 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9031620  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:102
Interacting mature miRNAs:102
Transcripts:ENST00000402707
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human

Markers in Region
UniSTS:480830  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37627,833,107 - 27,833,575UniSTSGRCh37
Build 36627,941,086 - 27,941,554RGDNCBI36
Celera629,439,143 - 29,439,611RGD
HuRef627,640,791 - 27,641,259UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
161 307 216 199 798 311 617 2 139 681 127 434 1376 1189 41 456 186 655 442 22

Sequence


Ensembl Acc Id: ENST00000402707
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl627,864,062 - 27,864,401 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC H2BC16P COSMIC
Ensembl Genes ENSG00000217646 Ensembl, ENTREZGENE
GTEx ENSG00000217646 GTEx
HGNC ID HGNC:4754 ENTREZGENE
Human Proteome Map H2BC16P Human Proteome Map
NCBI Gene 10340 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-30 H2BC16P  H2B clustered histone 16, pseudogene  HIST1H2BPS2  histone cluster 1 H2B pseudogene 2  Symbol and/or name change 5135510 APPROVED
2016-08-23 HIST1H2BPS2  histone cluster 1 H2B pseudogene 2    histone cluster 1, H2b, pseudogene 2  Symbol and/or name change 5135510 APPROVED