RPSAP2 (ribosomal protein SA pseudogene 2) - Rat Genome Database

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Gene: RPSAP2 (ribosomal protein SA pseudogene 2) Homo sapiens
Analyze
Symbol: RPSAP2
Name: ribosomal protein SA pseudogene 2
RGD ID: 1348591
HGNC Page HGNC:18771
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: bA60E24.1; LAMR1P2; RPSA_15_672
Related Functional Gene: RPSA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,731,939 - 28,732,974 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,732,017 - 28,732,904 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,699,716 - 28,700,751 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,805,620 - 28,808,660 (+)NCBINCBI36Build 36hg18NCBI36
Celera630,306,102 - 30,307,139 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,507,258 - 28,508,293 (+)NCBIHuRef
CHM1_1628,701,999 - 28,703,034 (+)NCBICHM1_1
T2T-CHM13v2.0628,606,729 - 28,607,764 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:31
Interacting mature miRNAs:31
Transcripts:ENST00000416785
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5
Low 1 10 2 1 3 28 1 1
Below cutoff 327 383 200 51 272 28 615 238 419 53 304 252 24 161 376 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000416785
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,732,017 - 28,732,904 (+)Ensembl
RefSeq Acc Id: XR_017018
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36628,805,620 - 28,808,660 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC RPSAP2 COSMIC
Ensembl Genes ENSG00000237425 Ensembl, ENTREZGENE
GTEx ENSG00000237425 GTEx
HGNC ID HGNC:18771 ENTREZGENE
Human Proteome Map RPSAP2 Human Proteome Map
NCBI Gene 442181 ENTREZGENE
PharmGKB PA134969997 PharmGKB