NCOR1P1 (NCOR1 pseudogene 1) - Rat Genome Database

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Gene: NCOR1P1 (NCOR1 pseudogene 1) Homo sapiens
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Symbol: NCOR1P1
Name: NCOR1 pseudogene 1
RGD ID: 1348152
HGNC Page HGNC:16724
Description: INTERACTS WITH benzo[e]pyrene; butanal; heptanal
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: bB329D4.2; C20orf191; nuclear receptor corepressor 1 pseudogene 1
Related Functional Gene: NCOR1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382026,103,416 - 26,114,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2026,103,489 - 26,113,986 (-)EnsemblGRCh38hg38GRCh38
GRCh372026,084,052 - 26,094,677 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362026,032,052 - 26,042,677 (-)NCBINCBI36Build 36hg18NCBI36
Celera2026,100,548 - 26,111,173 (-)NCBICelera
Cytogenetic Map20p11.1NCBI
HuRef2025,970,189 - 25,980,814 (-)NCBIHuRef
CHM1_12026,084,223 - 26,094,870 (-)NCBICHM1_1
T2T-CHM13v2.02026,107,136 - 26,117,801 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
benzo[e]pyrene  (EXP)
butanal  (EXP)
heptanal  (EXP)
hexanal  (EXP)
methapyrilene  (EXP)
nonanal  (EXP)
octanal  (EXP)
paracetamol  (EXP)
pentanal  (EXP)
propanal  (EXP)
valproic acid  (EXP)

References
Additional References at PubMed
PMID:11780052   PMID:12477932  


Genomics

Variants

.
Variants in NCOR1P1
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:129
Interacting mature miRNAs:131
Transcripts:ENST00000478176, ENST00000486162
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
L29954  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372026,090,537 - 26,090,759UniSTSGRCh37
GRCh37757,662,585 - 57,662,895UniSTSGRCh37
Build 36757,666,527 - 57,666,837RGDNCBI36
Celera756,387,492 - 56,387,806RGD
Celera2026,107,033 - 26,107,255UniSTS
Cytogenetic Map20p11.1UniSTS
HuRef2025,976,674 - 25,976,896UniSTS
HuRef757,262,105 - 57,262,411UniSTS
CRA_TCAGchr7v2757,666,687 - 57,666,997UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
49 104 60 67 307 87 203 50 95 45 156 342 256 30 204 66 485 143 8

Sequence


Ensembl Acc Id: ENST00000478176
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2026,103,281 - 26,135,785 (-)Ensembl
Ensembl Acc Id: ENST00000486162
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2026,103,489 - 26,113,986 (-)Ensembl
Ensembl Acc Id: ENST00000757526
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2026,103,377 - 26,135,714 (-)Ensembl
Ensembl Acc Id: ENST00000757527
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2026,103,381 - 26,135,598 (-)Ensembl
Ensembl Acc Id: ENST00000757528
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2026,103,380 - 26,131,571 (-)Ensembl
Ensembl Acc Id: ENST00000757529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2026,103,375 - 26,124,378 (-)Ensembl
Ensembl Acc Id: ENST00000757530
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2026,103,378 - 26,124,378 (-)Ensembl
RefSeq Acc Id: NR_003678
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382026,103,416 - 26,114,041 (-)NCBI
GRCh372026,084,052 - 26,094,677 (-)RGD
Build 362026,032,052 - 26,042,677 (-)NCBI Archive
Celera2026,100,548 - 26,111,173 (-)RGD
HuRef2025,970,189 - 25,980,814 (-)ENTREZGENE
CHM1_12026,084,223 - 26,094,870 (-)NCBI
T2T-CHM13v2.02026,107,136 - 26,117,801 (-)NCBI
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H4R4-F1-model_v2 AlphaFold Q9H4R4 1-102 view protein structure


Additional Information

Database Acc Id Source(s)
COSMIC NCOR1P1 COSMIC
Ensembl Genes ENSG00000240108 Ensembl
  ENSG00000290409 Ensembl
Gene3D-CATH 1.20.5.430 UniProtKB/Swiss-Prot
GTEx ENSG00000240108 GTEx
  ENSG00000290409 GTEx
HGNC ID HGNC:16724 ENTREZGENE
Human Proteome Map NCOR1P1 Human Proteome Map
InterPro N-CoR_GPS2_interact UniProtKB/Swiss-Prot
NCBI Gene NCOR1P1 ENTREZGENE
Pfam GPS2_interact UniProtKB/Swiss-Prot
PharmGKB PA25734 PharmGKB
UniProt CT191_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A2RUA0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-22 NCOR1P1  NCOR1 pseudogene 1  NCOR1P1  nuclear receptor corepressor 1 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-09-20 NCOR1P1  nuclear receptor corepressor 1 pseudogene 1  C20orf191  chromosome 20 open reading frame 191  Symbol and/or name change 5135510 APPROVED