ZSCAN5A (zinc finger and SCAN domain containing 5A) - Rat Genome Database

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Gene: ZSCAN5A (zinc finger and SCAN domain containing 5A) Homo sapiens
Analyze
Symbol: ZSCAN5A
Name: zinc finger and SCAN domain containing 5A
RGD ID: 1347881
HGNC Page HGNC:23710
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC4161; zinc finger and SCAN domain containing 5; zinc finger and SCAN domain-containing protein 5A; zinc finger protein 495; ZNF495; ZSCAN5
RGD Orthologs
Bonobo
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC100421368  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381956,221,303 - 56,368,278 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1956,219,670 - 56,368,383 (-)EnsemblGRCh38hg38GRCh38
GRCh371956,732,672 - 56,879,647 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361961,424,491 - 61,431,471 (-)NCBINCBI36Build 36hg18NCBI36
Build 341961,424,492 - 61,431,471NCBI
Celera1953,776,367 - 53,783,348 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1953,042,474 - 53,049,455 (-)NCBIHuRef
CHM1_11956,726,250 - 56,733,230 (-)NCBICHM1_1
T2T-CHM13v2.01959,320,082 - 59,462,670 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 29 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZSCAN5AHumanacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of ZSCAN5A mRNACTDPMID:32763439
ZSCAN5AHumanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of ZSCAN5A intronCTDPMID:30157460
ZSCAN5AHumanAflatoxin B2 alpha increases methylationEXP 6480464aflatoxin B2 results in increased methylation of ZSCAN5A intronCTDPMID:30157460
ZSCAN5AHumanall-trans-retinoic acid decreases expressionEXP 6480464Tretinoin results in decreased expression of ZSCAN5A mRNACTDPMID:33167477
ZSCAN5AHumanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of ZSCAN5A 3' UTR and Benzo(a)pyrene affects the methylation of ZSCAN5A intronCTDPMID:27901495 and PMID:30157460
ZSCAN5AHumanbenzo[a]pyrene diol epoxide I decreases expressionEXP 64804647 more ...CTDPMID:26238291
ZSCAN5AHumanbenzo[e]pyrene increases methylationEXP 6480464benzo(e)pyrene results in increased methylation of ZSCAN5A intronCTDPMID:30157460
ZSCAN5AHumanbeta-lapachone decreases expressionEXP 6480464beta-lapachone results in decreased expression of ZSCAN5A mRNACTDPMID:38218311
ZSCAN5AHumanbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of ZSCAN5A mRNACTDPMID:27685785
ZSCAN5AHumancadmium atom multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of ZSCAN5A mRNACTDPMID:35301059
ZSCAN5AHumancadmium dichloride multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of ZSCAN5A mRNACTDPMID:35301059
ZSCAN5AHumancaffeine decreases phosphorylationEXP 6480464Caffeine results in decreased phosphorylation of ZSCAN5A proteinCTDPMID:35688186
ZSCAN5AHumancarbamazepine affects expressionEXP 6480464Carbamazepine affects the expression of ZSCAN5A mRNACTDPMID:25979313
ZSCAN5AHumanCGP 52608 multiple interactionsEXP 6480464CGP 52608 promotes the reaction [RORA protein binds to ZSCAN5A gene]CTDPMID:28238834
ZSCAN5AHumancisplatin multiple interactionsEXP 6480464[Cisplatin co-treated with jinfukang] results in decreased expression of ZSCAN5A mRNACTDPMID:27392435
ZSCAN5AHumancopper(II) sulfate decreases expressionEXP 6480464Copper Sulfate results in decreased expression of ZSCAN5A mRNACTDPMID:19549813
ZSCAN5AHumancyclosporin A decreases expressionEXP 6480464Cyclosporine results in decreased expression of ZSCAN5A mRNACTDPMID:25562108
ZSCAN5AHumanformaldehyde decreases expressionEXP 6480464Formaldehyde results in decreased expression of ZSCAN5A mRNACTDPMID:23649840
ZSCAN5AHumanFR900359 increases phosphorylationEXP 6480464FR900359 results in increased phosphorylation of ZSCAN5A proteinCTDPMID:37730182
ZSCAN5AHumangeraniol increases expressionEXP 6480464geraniol results in increased expression of ZSCAN5A mRNACTDPMID:27683099

1 to 20 of 29 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZSCAN5AHumanregulation of transcription by RNA polymerase II involved_inIBAFB:FBgn0004618 more ...150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZSCAN5AHumannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
ZSCAN5AHumannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
ZSCAN5AHumannucleus located_inIEAUniRule:UR000415288150520179 UniProtGO_REF:0000104

Molecular Function

  


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8125298   PMID:12477932   PMID:15489334   PMID:16344560   PMID:21832049   PMID:21873635   PMID:26496610   PMID:27705803   PMID:27732952   PMID:28473536   PMID:28514442   PMID:30804502  
PMID:32296183   PMID:32393512   PMID:32891193   PMID:33961781   PMID:36543142  



ZSCAN5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381956,221,303 - 56,368,278 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1956,219,670 - 56,368,383 (-)EnsemblGRCh38hg38GRCh38
GRCh371956,732,672 - 56,879,647 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361961,424,491 - 61,431,471 (-)NCBINCBI36Build 36hg18NCBI36
Build 341961,424,492 - 61,431,471NCBI
Celera1953,776,367 - 53,783,348 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1953,042,474 - 53,049,455 (-)NCBIHuRef
CHM1_11956,726,250 - 56,733,230 (-)NCBICHM1_1
T2T-CHM13v2.01959,320,082 - 59,462,670 (-)NCBIT2T-CHM13v2.0
ZSCAN5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22062,512,430 - 62,604,126 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11964,304,181 - 64,395,645 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01953,250,736 - 53,257,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11962,045,995 - 62,053,099 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1962,046,002 - 62,053,019 (-)Ensemblpanpan1.1panPan2

.

.
Variants in ZSCAN5A
65 total Variants

1 to 10 of 101 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 19q13.33-13.43(chr19:50191219-58535818)x3 copy number gain See cases [RCV000050883] Chr19:50191219..58535818 [GRCh38]
Chr19:50694476..59047185 [GRCh37]
Chr19:55386288..63738997 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3 copy number gain See cases [RCV000052925] Chr19:49907832..58557889 [GRCh38]
Chr19:50411089..59069256 [GRCh37]
Chr19:55102901..63761068 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:51141518-58539965)x3 copy number gain See cases [RCV000052926] Chr19:51141518..58539965 [GRCh38]
Chr19:51644775..59051332 [GRCh37]
Chr19:56336587..63743144 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3 copy number gain See cases [RCV000052914] Chr19:47908540..58539965 [GRCh38]
Chr19:48411797..59051332 [GRCh37]
Chr19:53103609..63743144 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3 copy number gain See cases [RCV000052915] Chr19:47929575..58572206 [GRCh38]
Chr19:48432832..59083573 [GRCh37]
Chr19:53124644..63775385 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
NM_024303.1(ZSCAN5A):c.1106C>T (p.Ser369Phe) single nucleotide variant Malignant melanoma [RCV000072393] Chr19:56221960 [GRCh38]
Chr19:56733329 [GRCh37]
Chr19:61425141 [NCBI36]
Chr19:19q13.43
not provided
NM_024303.1(ZSCAN5A):c.759G>A (p.Lys253=) single nucleotide variant Malignant melanoma [RCV000072394] Chr19:56222307 [GRCh38]
Chr19:56733676 [GRCh37]
Chr19:61425488 [NCBI36]
Chr19:19q13.43
not provided
NM_024303.1(ZSCAN5A):c.35G>A (p.Gly12Glu) single nucleotide variant Malignant melanoma [RCV000063650] Chr19:56225012 [GRCh38]
Chr19:56736381 [GRCh37]
Chr19:61428193 [NCBI36]
Chr19:19q13.43
not provided
GRCh38/hg38 19q13.41-13.43(chr19:52612432-58581203)x3 copy number gain See cases [RCV000134174] Chr19:52612432..58581203 [GRCh38]
Chr19:53115685..59092570 [GRCh37]
Chr19:57807497..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52955056-58581203)x3 copy number gain See cases [RCV000134139] Chr19:52955056..58581203 [GRCh38]
Chr19:53458309..59092570 [GRCh37]
Chr19:58150121..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
1 to 10 of 101 rows

Predicted Target Of
Summary Value
Count of predictions:2907
Count of miRNA genes:987
Interacting mature miRNAs:1203
Transcripts:ENST00000254165, ENST00000391713, ENST00000585670, ENST00000586031, ENST00000587075, ENST00000587340, ENST00000587492, ENST00000587614, ENST00000588442, ENST00000588955, ENST00000589279, ENST00000590675, ENST00000591078, ENST00000592101, ENST00000592355, ENST00000592509, ENST00000592679, ENST00000593106
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
597091188GWAS1187262_Hmonocyte count QTL GWAS1187262 (human)1e-12monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)195622205656222057Human
597435320GWAS1531394_Hpancreatic carcinoma QTL GWAS1531394 (human)3e-08pancreatic carcinoma195630198456301985Human
597362735GWAS1458809_Hhip bone mineral density QTL GWAS1458809 (human)0.000006hip bone mineral densitybone mineral density (CMO:0001226)195633979956339800Human
597088963GWAS1185037_Hmonocyte percentage of leukocytes QTL GWAS1185037 (human)6e-12monocyte quantity (VT:0000223)blood monocyte count to total leukocyte count ratio (CMO:0000374)195622517556225177Human
597304717GWAS1400791_Hmonocyte count QTL GWAS1400791 (human)1e-11monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)195622205656222057Human
597083183GWAS1179257_Hmonocyte count QTL GWAS1179257 (human)1e-15monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)195622205656222057Human
596983932GWAS1103451_Htelomere length QTL GWAS1103451 (human)3e-14telomere length195622205656222057Human
597098844GWAS1194918_Hmonocyte count QTL GWAS1194918 (human)7e-18monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)195622205656222057Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human

1 to 10 of 10 rows
WI-11903  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371956,732,695 - 56,732,821UniSTSGRCh37
Build 361961,424,507 - 61,424,633RGDNCBI36
Celera1953,776,383 - 53,776,509RGD
Cytogenetic Map19q13.43UniSTS
HuRef1953,042,490 - 53,042,616UniSTS
GeneMap99-GB4 RH Map19283.91UniSTS
Whitehead-RH Map19375.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2432 2788 2245 4940 1723 2345 4 622 1948 464 2266 7281 6454 52 3708 847 1730 1612 170


1 to 30 of 38 rows
RefSeq Transcripts NM_001322061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC011506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI699820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 38 rows

Ensembl Acc Id: ENST00000391713   ⟹   ENSP00000375593
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,219,670 - 56,228,290 (-)Ensembl
Ensembl Acc Id: ENST00000585670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,280,602 - 56,314,793 (-)Ensembl
Ensembl Acc Id: ENST00000586031
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,266,218 - 56,266,761 (-)Ensembl
Ensembl Acc Id: ENST00000587075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,283,345 - 56,313,380 (-)Ensembl
Ensembl Acc Id: ENST00000587340   ⟹   ENSP00000467631
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,221,312 - 56,368,383 (-)Ensembl
Ensembl Acc Id: ENST00000587492   ⟹   ENSP00000466445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,221,487 - 56,314,925 (-)Ensembl
Ensembl Acc Id: ENST00000587614
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,296,068 - 56,314,839 (-)Ensembl
Ensembl Acc Id: ENST00000588442   ⟹   ENSP00000468675
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,224,920 - 56,314,839 (-)Ensembl
Ensembl Acc Id: ENST00000588955   ⟹   ENSP00000468008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,224,793 - 56,314,513 (-)Ensembl
Ensembl Acc Id: ENST00000589279
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,274,539 - 56,314,833 (-)Ensembl
Ensembl Acc Id: ENST00000590675
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,263,218 - 56,313,387 (-)Ensembl
Ensembl Acc Id: ENST00000591078
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,274,504 - 56,314,859 (-)Ensembl
Ensembl Acc Id: ENST00000592101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,224,322 - 56,225,429 (-)Ensembl
Ensembl Acc Id: ENST00000592355   ⟹   ENSP00000467238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,221,312 - 56,228,311 (-)Ensembl
Ensembl Acc Id: ENST00000592509   ⟹   ENSP00000468797
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,224,731 - 56,314,788 (-)Ensembl
Ensembl Acc Id: ENST00000592679   ⟹   ENSP00000466830
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,224,932 - 56,314,828 (-)Ensembl
Ensembl Acc Id: ENST00000593106   ⟹   ENSP00000464936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,222,058 - 56,314,842 (-)Ensembl
Ensembl Acc Id: ENST00000683990   ⟹   ENSP00000507065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,221,303 - 56,314,839 (-)Ensembl
RefSeq Acc Id: NM_001322061   ⟹   NP_001308990
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
CHM1_11956,726,243 - 56,818,762 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322062   ⟹   NP_001308991
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,230,401 (-)NCBI
CHM1_11956,726,243 - 56,735,339 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,329,180 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322064   ⟹   NP_001308993
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
CHM1_11956,726,243 - 56,818,762 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322065   ⟹   NP_001308994
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
CHM1_11956,726,243 - 56,818,762 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322066   ⟹   NP_001308995
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,345 (-)NCBI
CHM1_11956,726,243 - 56,818,401 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,066 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322067   ⟹   NP_001308996
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,562 (-)NCBI
CHM1_11956,726,243 - 56,818,401 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,283 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322068   ⟹   NP_001308997
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,562 (-)NCBI
CHM1_11956,726,243 - 56,818,401 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,283 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322070   ⟹   NP_001308999
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,345 (-)NCBI
CHM1_11956,726,243 - 56,818,401 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,066 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322072   ⟹   NP_001309001
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,368,278 (-)NCBI
CHM1_11956,726,243 - 56,873,322 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,462,670 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322073   ⟹   NP_001309002
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
CHM1_11956,726,243 - 56,818,762 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322074   ⟹   NP_001309003
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
CHM1_11956,726,243 - 56,818,764 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322075   ⟹   NP_001309004
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,345 (-)NCBI
CHM1_11956,726,243 - 56,818,401 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,066 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322076   ⟹   NP_001309005
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,345 (-)NCBI
CHM1_11956,726,243 - 56,818,401 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,066 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322077   ⟹   NP_001309006
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
CHM1_11956,726,243 - 56,818,762 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001322078   ⟹   NP_001309007
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
CHM1_11956,726,243 - 56,818,762 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387853   ⟹   NP_001374782
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387854   ⟹   NP_001374783
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387855   ⟹   NP_001374784
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387856   ⟹   NP_001374785
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387857   ⟹   NP_001374786
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,839 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,560 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387858   ⟹   NP_001374787
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,562 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,283 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387859   ⟹   NP_001374788
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,314,345 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,412,066 (-)NCBI
Sequence:
RefSeq Acc Id: NM_024303   ⟹   NP_077279
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,221,303 - 56,230,401 (-)NCBI
GRCh371956,732,672 - 56,826,208 (-)NCBI
Build 361961,424,491 - 61,431,471 (-)NCBI Archive
Celera1953,776,367 - 53,783,348 (-)RGD
HuRef1953,042,474 - 53,049,455 (-)ENTREZGENE
CHM1_11956,726,243 - 56,735,339 (-)NCBI
T2T-CHM13v2.01959,320,082 - 59,329,180 (-)NCBI
Sequence:
1 to 30 of 39 rows
Protein RefSeqs NP_001308990 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308991 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308993 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308994 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308995 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308996 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308997 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308999 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309001 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309002 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309003 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309004 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309005 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309006 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309007 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374782 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374783 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374784 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374785 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374786 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374787 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374788 (Get FASTA)   NCBI Sequence Viewer  
  NP_077279 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH02636 (Get FASTA)   NCBI Sequence Viewer  
  AAH43232 (Get FASTA)   NCBI Sequence Viewer  
  BAC05386 (Get FASTA)   NCBI Sequence Viewer  
  BAD97205 (Get FASTA)   NCBI Sequence Viewer  
  BAG63310 (Get FASTA)   NCBI Sequence Viewer  
  EAW72433 (Get FASTA)   NCBI Sequence Viewer  
  EAW72434 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 39 rows
1 to 5 of 33 rows
1 to 5 of 33 rows
RefSeq Acc Id: NP_077279   ⟸   NM_024303
- Peptide Label: isoform b
- UniProtKB: Q53F04 (UniProtKB/Swiss-Prot),   Q49A73 (UniProtKB/Swiss-Prot),   B4DX98 (UniProtKB/Swiss-Prot),   Q8N7B3 (UniProtKB/Swiss-Prot),   Q9BUG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001309001   ⟸   NM_001322072
- Peptide Label: isoform b
- UniProtKB: Q53F04 (UniProtKB/Swiss-Prot),   Q49A73 (UniProtKB/Swiss-Prot),   B4DX98 (UniProtKB/Swiss-Prot),   Q8N7B3 (UniProtKB/Swiss-Prot),   Q9BUG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001309003   ⟸   NM_001322074
- Peptide Label: isoform c
- UniProtKB: A0A0C4DGQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001309007   ⟸   NM_001322078
- Peptide Label: isoform e
- UniProtKB: Q9BUG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001309006   ⟸   NM_001322077
- Peptide Label: isoform d
- UniProtKB: Q9BUG6 (UniProtKB/Swiss-Prot)
- Sequence:
C2H2-type   SCAN box

Name Modeler Protein Id AA Range Protein Structure
AF-Q9BUG6-F1-model_v2 AlphaFold Q9BUG6 1-496 view protein structure

RGD ID:13205823
Promoter ID:EPDNEW_H26492
Type:initiation region
Name:ZSCAN5A_2
Description:zinc finger and SCAN domain containing 5A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26493  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,228,301 - 56,228,361EPDNEW
RGD ID:13205825
Promoter ID:EPDNEW_H26493
Type:initiation region
Name:ZSCAN5A_1
Description:zinc finger and SCAN domain containing 5A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26492  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,314,839 - 56,314,899EPDNEW


1 to 40 of 52 rows
Database
Acc Id
Source(s)
COSMIC ZSCAN5A COSMIC
Ensembl Genes ENSG00000131848 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000391713 ENTREZGENE
  ENST00000391713.5 UniProtKB/Swiss-Prot
  ENST00000587340 ENTREZGENE
  ENST00000587340.5 UniProtKB/Swiss-Prot
  ENST00000587492 ENTREZGENE
  ENST00000592355 ENTREZGENE
  ENST00000683990 ENTREZGENE
  ENST00000683990.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000131848 GTEx
HGNC ID HGNC:23710 ENTREZGENE
Human Proteome Map ZSCAN5A Human Proteome Map
InterPro SCAN_dom UniProtKB/Swiss-Prot
  SCAN_sf UniProtKB/Swiss-Prot
  Zinc_finger UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:79149 UniProtKB/Swiss-Prot
NCBI Gene 79149 ENTREZGENE
OMIM 620916 OMIM
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
Pfam SCAN UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
  zf-met UniProtKB/Swiss-Prot
PharmGKB PA162411030 PharmGKB
PROSITE SCAN_BOX UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART SCAN UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A0A0C4DGQ1 ENTREZGENE, UniProtKB/TrEMBL
  B4DX98 ENTREZGENE
  K7EIX9_HUMAN UniProtKB/TrEMBL
  K7EMC4_HUMAN UniProtKB/TrEMBL
1 to 40 of 52 rows