RPL34P3 (ribosomal protein L34 pseudogene 3) - Rat Genome Database

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Gene: RPL34P3 (ribosomal protein L34 pseudogene 3) Homo sapiens
Analyze
Symbol: RPL34P3
Name: ribosomal protein L34 pseudogene 3
RGD ID: 1343494
HGNC Page HGNC:10343
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RPL34  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382135,472,076 - 35,472,455 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2135,472,095 - 35,472,432 (-)EnsemblGRCh38hg38GRCh38
GRCh372136,844,374 - 36,844,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362135,766,144 - 35,766,723 (-)NCBINCBI36Build 36hg18NCBI36
Celera2122,043,754 - 22,044,133 (-)NCBICelera
Cytogenetic Map21q22.12NCBI
HuRef2122,323,299 - 22,323,678 (-)NCBIHuRef
CHM1_12136,406,440 - 36,406,819 (-)NCBICHM1_1
T2T-CHM13v2.02133,854,988 - 33,855,367 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10830953  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:75
Interacting mature miRNAs:75
Transcripts:ENST00000421454
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-9575  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372136,846,390 - 36,846,511UniSTSGRCh37
Build 362135,768,260 - 35,768,381RGDNCBI36
Celera2122,045,770 - 22,045,891RGD
Cytogenetic Map21q22.12UniSTS
HuRef2122,325,315 - 22,325,436UniSTS
TNG Radiation Hybrid Map2112776.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 10 1
Below cutoff 26 24 19 19 20 5 64 14 38 2 107 17 14 12 38

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000421454
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2135,472,095 - 35,472,432 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL34P3 COSMIC
Ensembl Genes ENSG00000223671 Ensembl, ENTREZGENE
GTEx ENSG00000223671 GTEx
HGNC ID HGNC:10343 ENTREZGENE
Human Proteome Map RPL34P3 Human Proteome Map
NCBI Gene 54026 ENTREZGENE
PharmGKB PA34726 PharmGKB