Advanced Search (OLGA)

Gene: TMA7 (translation machinery associated 7 homolog) Canis lupus familiaris

Analyze

Symbol:

TMA7

Name:

translation machinery associated 7 homolog

RGD ID:

13359159

Description:

ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

translation machinery-associated protein 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	40,713,865 - 40,714,228 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	40,713,879 - 40,714,073 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	27	41,069,789 - 41,070,176 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	41,069,815 - 41,070,009 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	41,007,478 - 41,007,869 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	40,982,902 - 40,983,284 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	5,379,206 - 5,379,602 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ISO)

References

Genomics

Comparative Map Data

TMA7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	40,713,865 - 40,714,228 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	40,713,879 - 40,714,073 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	27	41,069,789 - 41,070,176 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	41,069,815 - 41,070,009 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	41,007,478 - 41,007,869 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	40,982,902 - 40,983,284 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	5,379,206 - 5,379,602 (-)	NCBI		UU_Cfam_GSD_1.0

TMA7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	48,440,257 - 48,444,208 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	48,440,257 - 48,444,208 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	48,481,667 - 48,485,616 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	48,456,690 - 48,460,541 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	48,432,457 - 48,436,308 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	48,535,990 - 48,539,688 (+)	NCBI		HuRef
CHM1_1	3	48,433,970 - 48,437,822 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	48,468,270 - 48,472,220 (+)	NCBI		T2T-CHM13v2.0

Tma7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,907,056 - 108,911,449 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	108,903,636 - 108,911,655 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	109,077,988 - 109,082,381 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	109,074,568 - 109,082,587 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,980,502 - 108,984,895 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	108,935,394 - 108,939,787 (-)	NCBI		MGSCv36	mm8
Celera	9	108,636,789 - 108,641,235 (-)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	59.63	NCBI

Tma7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	118,604,680 - 118,609,368 (-)	NCBI		GRCr8
mRatBN7.2	8	109,726,213 - 109,730,902 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,726,196 - 109,735,474 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	115,341,101 - 115,345,781 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	113,540,275 - 113,544,956 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	111,383,082 - 111,387,762 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	117,815,725 - 117,820,422 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,815,725 - 117,820,413 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	117,167,470 - 117,172,158 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	114,090,959 - 114,095,761 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	109,017,504 - 109,022,192 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Tma7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955420	16,389,256 - 16,389,553 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMA7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	48,415,033 - 48,419,071 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	48,419,865 - 48,423,839 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	48,362,222 - 48,366,235 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	49,445,038 - 49,448,342 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	49,445,111 - 49,448,009 (+)	Ensembl	panpan1.1		panPan2

LOC110599066
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	12,497,962 - 12,498,310 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936624	659,521 - 659,879 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100521518
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,153,629 - 31,156,339 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,153,614 - 31,156,339 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	34,418,084 - 34,420,799 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103227881
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	30,955,816 - 30,956,320 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	135,831,875 - 135,832,328 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in TMA7
26 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	ectoderm	endocrine system	endoderm	nervous system	reproductive system	respiratory system
1	3	3	2	3	3	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022411085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038437922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038514332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038576110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAAHUQ010000290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000042751 ⟹ ENSCAFP00000042871

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	40,713,879 - 40,714,073 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845054481 ⟹ ENSCAFP00845042822

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	41,069,815 - 41,070,009 (+)	Ensembl

RefSeq Acc Id:

XM_038437922 ⟹ XP_038293850

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	41,069,789 - 41,070,176 (+)	NCBI

RefSeq Acc Id:

XM_038514332 ⟹ XP_038370260

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	41,007,478 - 41,007,869 (+)	NCBI

RefSeq Acc Id:

XM_038576110 ⟹ XP_038432038

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	5,379,206 - 5,379,602 (-)	NCBI

RefSeq Acc Id:

XM_038640378 ⟹ XP_038496306

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	40,982,902 - 40,983,284 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_038293850	(Get FASTA)	NCBI Sequence Viewer
	XP_038370260	(Get FASTA)	NCBI Sequence Viewer
	XP_038432038	(Get FASTA)	NCBI Sequence Viewer
	XP_038496306	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000052218.2
	ENSCAFP00030034102.1
	ENSCAFP00040038831.1
	ENSCAFP00040038842.1
	ENSCAFP00845008840.1
	ENSCAFP00845042822
	ENSCAFP00845042822.1

Ensembl Acc Id:

ENSCAFP00000042871 ⟸ ENSCAFT00000042751

RefSeq Acc Id:

XP_038370260 ⟸ XM_038514332

RefSeq Acc Id:

XP_038496306 ⟸ XM_038640378

RefSeq Acc Id:	XP_038293850 ⟸ XM_038437922
- UniProtKB:	A0A8C0LAY3 (UniProtKB/TrEMBL), A0A8C0TQE0 (UniProtKB/TrEMBL), A0A8I3MUU2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038432038 ⟸ XM_038576110
- UniProtKB:	A0A8C0LAY3 (UniProtKB/TrEMBL), A0A8C0TQE0 (UniProtKB/TrEMBL), A0A8I3MUU2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845042822 ⟸ ENSCAFT00845054481

Promoters

RGD ID:

13688224

Promoter ID:

EPDNEW_C6292

Type:

single initiation site

Name:

TMA7_1

Description:

translation machinery associated 7 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	40,713,872 - 40,713,932	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000029439	Ensembl
	ENSCAFG00000047673	UniProtKB/TrEMBL
	ENSCAFG00030021300	UniProtKB/TrEMBL
	ENSCAFG00040023889	UniProtKB/TrEMBL
	ENSCAFG00040023898	UniProtKB/TrEMBL
	ENSCAFG00845006383	UniProtKB/TrEMBL
	ENSCAFG00845030690	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000076739.2	UniProtKB/TrEMBL
	ENSCAFT00030039095.1	UniProtKB/TrEMBL
	ENSCAFT00040044469.1	UniProtKB/TrEMBL
	ENSCAFT00040044480.1	UniProtKB/TrEMBL
	ENSCAFT00845011325.1	UniProtKB/TrEMBL
	ENSCAFT00845054481	ENTREZGENE
	ENSCAFT00845054481.1	UniProtKB/TrEMBL
InterPro	TMA7	UniProtKB/TrEMBL
NCBI Gene	TMA7	ENTREZGENE
PANTHER	PTHR28632	UniProtKB/TrEMBL
	TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7	UniProtKB/TrEMBL
Pfam	TMA7	UniProtKB/TrEMBL
UniProt	A0A8C0LAY3	ENTREZGENE
	A0A8C0TQE0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MUU2	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:49843	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar