Tma7 (translational machinery associated 7) - Rat Genome Database
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Gene: Tma7 (translational machinery associated 7) Mus musculus
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Symbol: Tma7
Name: translational machinery associated 7
RGD ID: 1615125
MGI Page MGI
Description: Predicted to be involved in cytoplasmic translation. Is expressed in retina inner nuclear layer and retina outer nuclear layer. Orthologous to human TMA7 (translation machinery associated 7 homolog); INTERACTS WITH 1,2-dimethylhydrazine; bis(2-ethylhexyl) phthalate; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 1110017O22Rik; Ccdc72; coiled-coil domain containing 72; coiled-coil domain-containing protein 72; MGC117874; translation machinery-associated protein 7; translational machinery associated 7 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15610   Gm6916  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,907,056 - 108,911,449 (-)NCBIGRCm39mm39
GRCm389109,077,988 - 109,082,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9109,074,568 - 109,082,587 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,980,502 - 108,984,895 (-)NCBIGRCm37mm9NCBIm37
MGSCv369108,935,394 - 108,939,787 (-)NCBImm8
Celera9108,636,789 - 108,641,235 (-)NCBICelera
Cytogenetic Map9F2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15226823   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21873635   PMID:24165879   PMID:32325033  


Genomics

Comparative Map Data
Tma7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,907,056 - 108,911,449 (-)NCBIGRCm39mm39
GRCm389109,077,988 - 109,082,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9109,074,568 - 109,082,587 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,980,502 - 108,984,895 (-)NCBIGRCm37mm9NCBIm37
MGSCv369108,935,394 - 108,939,787 (-)NCBImm8
Celera9108,636,789 - 108,641,235 (-)NCBICelera
Cytogenetic Map9F2NCBI
TMA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl348,440,257 - 48,444,208 (+)EnsemblGRCh38hg38GRCh38
GRCh38348,440,257 - 48,444,208 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37348,481,686 - 48,485,537 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,456,690 - 48,460,541 (+)NCBINCBI36hg18NCBI36
Celera348,432,457 - 48,436,308 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef348,535,990 - 48,539,688 (+)NCBIHuRef
CHM1_1348,433,970 - 48,437,822 (+)NCBICHM1_1
Tma7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08117,815,725 - 117,820,422 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,815,725 - 117,820,413 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,167,470 - 117,172,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,090,959 - 114,095,761 (-)NCBIRGSC3.4rn4RGSC3.4
Celera8109,017,504 - 109,022,192 (-)NCBICelera
Cytogenetic Map8q32NCBI
Tma7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542016,389,256 - 16,389,553 (-)NCBIChiLan1.0ChiLan1.0
TMA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1349,445,038 - 49,448,342 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,445,111 - 49,448,009 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0348,362,222 - 48,366,235 (+)NCBIMhudiblu_PPA_v0panPan3
TMA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2740,713,879 - 40,714,073 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12740,713,865 - 40,714,228 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tma7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936624659,521 - 659,879 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100521518
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,153,629 - 31,156,339 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,153,614 - 31,156,339 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,418,084 - 34,420,799 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103227881
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12230,955,816 - 30,956,320 (-)NCBI

Position Markers
UniSTS:492351  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382158,468,089 - 158,468,395UniSTSGRCm38
GRCm3819,782,039 - 9,782,344UniSTSGRCm38
MGSCv3719,772,120 - 9,772,425UniSTSGRCm37
MGSCv372158,293,825 - 158,294,131UniSTSGRCm37
Celera19,756,464 - 9,756,769UniSTS
Celera2164,404,549 - 164,404,855UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map1A2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:116
Interacting mature miRNAs:116
Transcripts:ENSMUST00000167504
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000167504   ⟹   ENSMUSP00000133026
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,077,887 - 109,082,587 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192442
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,082,063 - 109,082,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192801   ⟹   ENSMUSP00000142209
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,074,568 - 109,082,378 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193868
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,078,186 - 109,082,378 (-)Ensembl
RefSeq Acc Id: NM_183250   ⟹   NP_899073
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,907,056 - 108,911,449 (-)NCBI
GRCm389109,077,988 - 109,082,381 (-)ENTREZGENE
MGSCv379108,980,502 - 108,984,895 (-)RGD
Celera9108,636,789 - 108,641,235 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_899073   ⟸   NM_183250
- UniProtKB: Q8K003 (UniProtKB/Swiss-Prot),   Q14A47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000133026   ⟸   ENSMUST00000167504
RefSeq Acc Id: ENSMUSP00000142209   ⟸   ENSMUST00000192801

Promoters
RGD ID:6844296
Promoter ID:MM_KWN:58853
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000026735,   NM_183250
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,984,686 - 108,985,186 (+)MPROMDB
RGD ID:8670958
Promoter ID:EPDNEW_M13510
Type:initiation region
Name:Tma7_1
Description:Mus musculus translational machinery associated 7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389109,082,378 - 109,082,438EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913417 AgrOrtholog
Ensembl Genes ENSMUSG00000091537 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000133026 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142209 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000167504 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000192801 UniProtKB/TrEMBL
InterPro TMA7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66167 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1913417 ENTREZGENE
NCBI Gene 66167 ENTREZGENE
PANTHER PTHR28632 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TMA7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tma7 PhenoGen
UniGene Mm.2395 ENTREZGENE
  Mm.432111 ENTREZGENE
UniProt A0A0A6YXZ5_MOUSE UniProtKB/TrEMBL
  Q14A47 ENTREZGENE, UniProtKB/TrEMBL
  Q8K003 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 Tma7  translational machinery associated 7    translational machinery associated 7 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED
2012-09-19 Tma7  translational machinery associated 7 homolog (S. cerevisiae)  Ccdc72  coiled-coil domain containing 72  Symbol and/or name change 5135510 APPROVED