LOC111096475 (uncharacterized LOC111096475) - Rat Genome Database

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Gene: LOC111096475 (uncharacterized LOC111096475) Canis lupus familiaris
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Symbol: LOC111096475
Name: uncharacterized LOC111096475
RGD ID: 13266984
Description: ENCODES a protein that exhibits lipid transporter activity (inferred); INVOLVED IN lipid transport (inferred); ASSOCIATED WITH schizophrenia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: apolipophorins-like; LOC102153019; LOC111096476; uncharacterized LOC102153019; uncharacterized LOC111096476; uncharacterized protein LOC102153019; uncharacterized protein LOC111096475; uncharacterized protein LOC111096476
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1631,282,124 - 31,362,302 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha632,658,814 - 32,802,433 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0631,458,035 - 31,601,893 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1631,271,893 - 31,415,512 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0631,146,071 - 31,289,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0631,569,930 - 31,713,734 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC111096475
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1631,282,124 - 31,362,302 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha632,658,814 - 32,802,433 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0631,458,035 - 31,601,893 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1631,271,893 - 31,415,512 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0631,146,071 - 31,289,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0631,569,930 - 31,713,734 (+)NCBIUU_Cfam_GSD_1.0
LOC400499
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,372,015 - 11,527,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,359,845 - 11,527,245 (-)EnsemblGRCh38hg38GRCh38
GRCh371611,465,872 - 11,621,103 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361611,397,888 - 11,510,318 (-)NCBINCBI36Build 36hg18NCBI36
Celera1611,661,134 - 11,774,135 (-)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1611,454,497 - 11,503,632 (-)NCBIHuRef
CHM1_11611,528,510 - 11,585,539 (-)NCBICHM1_1
T2T-CHM13v2.01611,408,320 - 11,563,682 (-)NCBIT2T-CHM13v2.0
LOC102552269
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8105,216,625 - 5,313,022 (+)NCBIGRCr8
mRatBN7.2104,709,680 - 4,810,582 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0104,775,665 - 4,800,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0103,627,078 - 3,629,233 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera103,727,455 - 3,752,530 (+)NCBICelera
Cytogenetic Map10q11NCBI
LOC102029126
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554427,126,014 - 7,171,102 (+)NCBIChiLan1.0ChiLan1.0
LOC117976364
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21811,919,716 - 12,064,784 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11615,688,328 - 15,846,016 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,312,771 - 10,457,181 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC102157603
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1331,671,880 - 31,783,924 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2332,703,982 - 32,738,061 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103228356
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1510,885,497 - 10,964,619 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606819,156,150 - 19,311,386 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC111096475
1368 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038479134   ⟹   XP_038335062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1631,271,893 - 31,415,512 (+)NCBI
RefSeq Acc Id: XM_038540358   ⟹   XP_038396286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0631,569,930 - 31,713,734 (+)NCBI
RefSeq Acc Id: XM_038546986   ⟹   XP_038402914
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha632,658,814 - 32,802,433 (+)NCBI
RefSeq Acc Id: XM_038604460   ⟹   XP_038460388
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0631,146,071 - 31,289,657 (+)NCBI
RefSeq Acc Id: XM_038669158   ⟹   XP_038525086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0631,458,035 - 31,601,893 (+)NCBI
RefSeq Acc Id: XP_038335062   ⟸   XM_038479134
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038460388   ⟸   XM_038604460
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038525086   ⟸   XM_038669158
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NDY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402914   ⟸   XM_038546986
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NDY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038396286   ⟸   XM_038540358
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NDY4 (UniProtKB/TrEMBL)
Protein Domains
Vitellogenin   VWFD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845012829 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845022857 ENTREZGENE
  ENSCAFT00845022857.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.20 UniProtKB/TrEMBL
  2.20.50.20 UniProtKB/TrEMBL
  Lipovitellin-phosvitin complex, chain A, domain 4 UniProtKB/TrEMBL
InterPro Lipid_transp_b-sht_shell UniProtKB/TrEMBL
  Lipovitellin_superhlx_dom UniProtKB/TrEMBL
  LOC400499-like UniProtKB/TrEMBL
  Vitellinogen_b-sht_N UniProtKB/TrEMBL
  Vitellinogen_open_b-sht UniProtKB/TrEMBL
  Vitellinogen_open_b-sht_sub1 UniProtKB/TrEMBL
  Vitellogenin_N UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
NCBI Gene LOC111096475 ENTREZGENE
PANTHER AGAP008810-PA UniProtKB/TrEMBL
  PTHR37860:SF1 UniProtKB/TrEMBL
Pfam DUF1943 UniProtKB/TrEMBL
  LOC400499 UniProtKB/TrEMBL
  Vitellogenin_N UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
PROSITE VITELLOGENIN UniProtKB/TrEMBL
  VWFD UniProtKB/TrEMBL
SMART DUF1943 UniProtKB/TrEMBL
  LPD_N UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP SSF48431 UniProtKB/TrEMBL
UniProt A0A8I3NDY4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 LOC111096475  uncharacterized LOC111096475  LOC111096476  uncharacterized LOC111096476  Data merged from RGD:13324085 737654 PROVISIONAL
2021-01-14 LOC111096475  uncharacterized LOC111096475  LOC102153019  uncharacterized LOC102153019  Data merged from RGD:12285510 737654 PROVISIONAL
2021-01-12 LOC111096475  uncharacterized LOC111096475  LOC111096475  apolipophorins-like  Symbol and/or name change 5135510 APPROVED