AW551984 (expressed sequence AW551984) - Rat Genome Database

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Gene: AW551984 (expressed sequence AW551984) Mus musculus
Analyze
No known orthologs.
Symbol: AW551984
Name: expressed sequence AW551984
RGD ID: 1323360
MGI Page MGI
Description: Acts upstream of or within cardiac muscle cell fate commitment. Predicted to be located in nucleoplasm. Is expressed in face mesenchyme and head mesenchyme. Orthologous to human VWA5A (von Willebrand factor A domain containing 5A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3222402N16; BCSC-1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39939,498,692 - 39,516,070 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl939,498,692 - 39,515,699 (-)EnsemblGRCm39 Ensembl
GRCm38939,587,396 - 39,604,774 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl939,587,396 - 39,604,403 (-)EnsemblGRCm38mm10GRCm38
MGSCv37939,394,981 - 39,411,709 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36939,337,967 - 39,354,695 (-)NCBIMGSCv36mm8
Celera936,825,217 - 36,841,927 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map920.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15172686   PMID:16141072   PMID:16141073  
PMID:21554246   PMID:21677750   PMID:28363736   PMID:28378742   PMID:30478225  


Genomics

Variants

.
Variants in AW551984
636 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1239
Count of miRNA genes:560
Interacting mature miRNAs:644
Transcripts:ENSMUST00000042485, ENSMUST00000119722, ENSMUST00000128054, ENSMUST00000130829, ENSMUST00000136814, ENSMUST00000141370, ENSMUST00000147753
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92850333341799326Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1558949Igan3_mIgA nephropathy 3 (mouse)Not determined93041469440565914Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse

Markers in Region
BB394482  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38939,587,620 - 39,587,729UniSTSGRCm38
MGSCv37939,395,205 - 39,395,314UniSTSGRCm37
Celera936,825,441 - 36,825,550UniSTS
Cytogenetic Map9A5.1UniSTS
Whitehead/MRC_RH9407.63UniSTS
AW551984  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38939,588,444 - 39,588,558UniSTSGRCm38
MGSCv37939,396,029 - 39,396,143UniSTSGRCm37
Celera936,826,265 - 36,826,379UniSTS
Cytogenetic Map9A5.1UniSTS
Whitehead/MRC_RH9406.39UniSTS
UniSTS:236093  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38939,588,319 - 39,588,536UniSTSGRCm38
MGSCv37939,395,904 - 39,396,121UniSTSGRCm37
Celera936,826,140 - 36,826,357UniSTS
Cytogenetic Map9A5.1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000042485   ⟹   ENSMUSP00000042582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,498,692 - 39,515,420 (-)Ensembl
GRCm38.p6 Ensembl939,587,396 - 39,604,124 (-)Ensembl
Ensembl Acc Id: ENSMUST00000119722   ⟹   ENSMUSP00000113212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,498,806 - 39,514,983 (-)Ensembl
GRCm38.p6 Ensembl939,587,510 - 39,603,687 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,501,888 - 39,503,542 (-)Ensembl
GRCm38.p6 Ensembl939,590,592 - 39,592,246 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130829   ⟹   ENSMUSP00000117262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,511,853 - 39,514,674 (-)Ensembl
GRCm38.p6 Ensembl939,600,557 - 39,603,378 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,511,591 - 39,514,923 (-)Ensembl
GRCm38.p6 Ensembl939,600,295 - 39,603,627 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141370   ⟹   ENSMUSP00000117328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,510,954 - 39,515,699 (-)Ensembl
GRCm38.p6 Ensembl939,599,658 - 39,604,403 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl939,500,258 - 39,502,282 (-)Ensembl
GRCm38.p6 Ensembl939,588,962 - 39,590,986 (-)Ensembl
RefSeq Acc Id: NM_001199556   ⟹   NP_001186485
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39939,498,692 - 39,514,948 (-)NCBI
GRCm38939,587,396 - 39,603,652 (-)NCBI
Celera936,825,217 - 36,841,927 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359951   ⟹   NP_001346880
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39939,498,692 - 39,515,566 (-)NCBI
GRCm38939,587,396 - 39,604,270 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178737   ⟹   NP_848852
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39939,498,692 - 39,515,420 (-)NCBI
GRCm38939,587,396 - 39,604,124 (-)NCBI
MGSCv37939,394,981 - 39,411,709 (-)RGD
Celera936,825,217 - 36,841,927 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510304   ⟹   XP_006510367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39939,499,431 - 39,516,070 (-)NCBI
GRCm38939,588,135 - 39,604,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510305   ⟹   XP_006510368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39939,500,199 - 39,515,517 (-)NCBI
GRCm38939,588,135 - 39,604,221 (-)NCBI
Sequence:
RefSeq Acc Id: NP_848852   ⟸   NM_178737
- UniProtKB: Q8BGF0 (UniProtKB/TrEMBL),   Q8C1D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186485   ⟸   NM_001199556
- UniProtKB: Q8BGF0 (UniProtKB/TrEMBL),   Q8C1D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006510367   ⟸   XM_006510304
- Peptide Label: isoform X1
- UniProtKB: Q8BGF0 (UniProtKB/TrEMBL),   Q8C1D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006510368   ⟸   XM_006510305
- Peptide Label: isoform X2
- UniProtKB: Q6P8K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001346880   ⟸   NM_001359951
- UniProtKB: Q8BGF0 (UniProtKB/TrEMBL),   Q8C1D4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000113212   ⟸   ENSMUST00000119722
Ensembl Acc Id: ENSMUSP00000117262   ⟸   ENSMUST00000130829
Ensembl Acc Id: ENSMUSP00000042582   ⟸   ENSMUST00000042485
Ensembl Acc Id: ENSMUSP00000117328   ⟸   ENSMUST00000141370
Protein Domains
VIT   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGF0-F1-model_v2 AlphaFold Q8BGF0 1-804 view protein structure

Promoters
RGD ID:8669256
Promoter ID:EPDNEW_M12657
Type:initiation region
Name:AW551984_1
Description:Mus musculus expressed sequence AW551984 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38939,603,619 - 39,603,679EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2143322 AgrOrtholog
Ensembl Genes ENSMUSG00000038112 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000042485 ENTREZGENE
  ENSMUST00000042485.11 UniProtKB/TrEMBL
  ENSMUST00000119722 ENTREZGENE
  ENSMUST00000119722.8 UniProtKB/TrEMBL
  ENSMUST00000130829.2 UniProtKB/TrEMBL
  ENSMUST00000141370.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro VIT UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report mmu:244810 UniProtKB/TrEMBL
MGD MGI:2143322 ENTREZGENE
NCBI Gene AW551984 ENTREZGENE
PANTHER EXPRESSED SEQUENCE AW551984 UniProtKB/TrEMBL
  VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A UniProtKB/TrEMBL
Pfam VIT UniProtKB/TrEMBL
  VWA_3 UniProtKB/TrEMBL
PhenoGen AW551984 PhenoGen
PROSITE VIT UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART VIT UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt D3Z518_MOUSE UniProtKB/TrEMBL
  D3Z5E6_MOUSE UniProtKB/TrEMBL
  Q6P8K4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BGF0 ENTREZGENE, UniProtKB/TrEMBL
  Q8C1D4 ENTREZGENE, UniProtKB/TrEMBL