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Gene: Spata24 (spermatogenesis associated 24) Mus musculus

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Symbol:

Spata24

Name:

spermatogenesis associated 24

RGD ID:

1323357

MGI Page

MGI

Description:

Enables DNA binding activity and identical protein binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Located in cytoplasm and male germ cell nucleus. Is expressed in several structures, including cardiovascular system; endocrine gland; genitourinary system; hemolymphoid system gland; and liver. Orthologous to human SPATA24 (spermatogenesis associated 24).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2700012K08Rik; 4930583E11Rik; 5133400G04Rik; AU016220; spermatogenesis-associated protein 24; TATA-binding protein-like factor-interacting protein; testis protein T6441 homolog; TI; TIP; TIPT; TIPT2; TLF-interacting protein; TRF2-interacting protein in testis

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	35,789,742 - 35,795,239 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	35,789,742 - 35,795,239 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	35,656,689 - 35,662,186 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	35,656,689 - 35,662,186 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	35,816,343 - 35,821,840 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	35,782,664 - 35,788,160 (-)	NCBI		MGSCv36	mm8
Celera	18	36,112,811 - 36,118,308 (-)	NCBI		Celera
Cytogenetic Map	18	B2	NCBI
cM Map	18	19.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata24	Mouse	autosomal dominant intellectual developmental disorder 31		ISO	SPATA24 (Homo sapiens)	8554872	ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH NEONATAL RESPIRATORY INSUFFICIENCY more ...	ClinVar	PMID:28492532
Spata24	Mouse	familial adenomatous polyposis 1		ISO	SPATA24 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial adenomatous polyposis 1	ClinVar	PMID:17963004 more ...
Spata24	Mouse	Hereditary Neoplastic Syndromes		ISO	SPATA24 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome	ClinVar	PMID:17963004 more ...
Spata24	Mouse	Keratoconus 1		ISO	SPATA24 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Keratoconus 1	ClinVar
Spata24	Mouse	Neurodevelopmental Disorders		ISO	SPATA24 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Spata24	Mouse	STING-associated vasculopathy with onset in infancy		ISO	SPATA24 (Homo sapiens)	8554872	ClinVar Annotator: match by term: STING-associated vasculopathy with onset in infancy	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata24	Mouse	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of SPATA24 mRNA	CTD	PMID:39298647
Spata24	Mouse	2,3,7,8-Tetrachlorodibenzofuran	increases expression	ISO	Spata24 (Rattus norvegicus)	6480464	2 more ...	CTD	PMID:32109520
Spata24	Mouse	4,4'-sulfonyldiphenol	increases expression	EXP		6480464	bisphenol S results in increased expression of SPATA24 mRNA	CTD	PMID:39298647
Spata24	Mouse	4-hydroxyphenyl retinamide	increases expression	EXP		6480464	Fenretinide results in increased expression of SPATA24 mRNA	CTD	PMID:28973697
Spata24	Mouse	6-propyl-2-thiouracil	increases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of SPATA24 mRNA	CTD	PMID:24780913
Spata24	Mouse	acetamide	increases expression	ISO	Spata24 (Rattus norvegicus)	6480464	acetamide results in increased expression of SPATA24 mRNA	CTD	PMID:31881176
Spata24	Mouse	acrylamide	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Acrylamide results in decreased expression of SPATA24 mRNA	CTD	PMID:28959563
Spata24	Mouse	aflatoxin B1	increases expression	ISO	SPATA24 (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of SPATA24 mRNA	CTD	PMID:27153756
Spata24	Mouse	atrazine	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Atrazine results in decreased expression of SPATA24 mRNA	CTD	PMID:36841081
Spata24	Mouse	benzo[a]pyrene	increases methylation	ISO	SPATA24 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of SPATA24 promoter	CTD	PMID:27901495
Spata24	Mouse	bisphenol A	increases expression	ISO	Spata24 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of SPATA24 mRNA	CTD	PMID:30816183 more ...
Spata24	Mouse	bisphenol F	decreases expression	EXP		6480464	bisphenol F results in decreased expression of SPATA24 mRNA	CTD	PMID:38685157
Spata24	Mouse	Cuprizon	increases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Cuprizone results in increased expression of SPATA24 mRNA	CTD	PMID:26577399
Spata24	Mouse	cyclosporin A	decreases expression	EXP		6480464	Cyclosporine results in decreased expression of SPATA24 mRNA	CTD	PMID:19770486
Spata24	Mouse	dicrotophos	decreases expression	ISO	SPATA24 (Homo sapiens)	6480464	dicrotophos results in decreased expression of SPATA24 mRNA	CTD	PMID:28302478
Spata24	Mouse	endosulfan	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Endosulfan results in decreased expression of SPATA24 mRNA	CTD	PMID:29391264
Spata24	Mouse	ethyl methanesulfonate	decreases expression	ISO	SPATA24 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in decreased expression of SPATA24 mRNA	CTD	PMID:23649840
Spata24	Mouse	fenvalerate	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	fenvalerate results in decreased expression of SPATA24 mRNA	CTD	PMID:30307764
Spata24	Mouse	ferric oxide	decreases expression	EXP		6480464	ferric oxide analog results in decreased expression of SPATA24 mRNA	CTD	PMID:24525745
Spata24	Mouse	indole-3-methanol	affects expression	ISO	Spata24 (Rattus norvegicus)	6480464	indole-3-carbinol affects the expression of SPATA24 mRNA	CTD	PMID:21396975
Spata24	Mouse	methyl methanesulfonate	decreases expression	ISO	SPATA24 (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of SPATA24 mRNA	CTD	PMID:23649840
Spata24	Mouse	ozone	multiple interactions	EXP		6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased expression of SPATA24 mRNA and [Air Pollutants results in increased abundance of Ozone] which results in increased expression of SPATA24 mRNA	CTD	PMID:34911549
Spata24	Mouse	paracetamol	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Acetaminophen results in decreased expression of SPATA24 mRNA	CTD	PMID:33387578
Spata24	Mouse	pirinixic acid	increases expression	EXP		6480464	pirinixic acid results in increased expression of SPATA24 mRNA	CTD	PMID:23811191
Spata24	Mouse	sodium arsenite	decreases expression	EXP		6480464	sodium arsenite results in decreased expression of SPATA24 mRNA	CTD	PMID:36209798
Spata24	Mouse	sulforaphane	increases expression	EXP		6480464	sulforaphane results in increased expression of SPATA24 mRNA	CTD	PMID:30529165
Spata24	Mouse	testosterone	increases expression	EXP		6480464	Testosterone deficiency results in increased expression of SPATA24 mRNA	CTD	PMID:33848595
Spata24	Mouse	testosterone	multiple interactions	EXP		6480464	1 more ...	CTD	PMID:33848595
Spata24	Mouse	tetrachloromethane	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Carbon Tetrachloride results in decreased expression of SPATA24 mRNA	CTD	PMID:31150632 and PMID:33387578
Spata24	Mouse	thioacetamide	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Thioacetamide results in decreased expression of SPATA24 mRNA	CTD	PMID:34492290
Spata24	Mouse	titanium dioxide	increases expression	EXP		6480464	titanium dioxide results in increased expression of SPATA24 mRNA	CTD	PMID:23557971
Spata24	Mouse	titanium dioxide	decreases methylation	ISO	SPATA24 (Homo sapiens)	6480464	titanium dioxide results in decreased methylation of SPATA24 promoter	CTD	PMID:34973136
Spata24	Mouse	toluene	decreases expression	ISO	Spata24 (Rattus norvegicus)	6480464	Toluene results in decreased expression of SPATA24 mRNA	CTD	PMID:22967744
Spata24	Mouse	triptonide	decreases expression	EXP		6480464	triptonide results in decreased expression of SPATA24 mRNA	CTD	PMID:33045310
Spata24	Mouse	trovafloxacin	decreases expression	EXP		6480464	trovafloxacin results in decreased expression of SPATA24 mRNA	CTD	PMID:35537566
Spata24	Mouse	tungsten	increases expression	EXP		6480464	Tungsten results in increased expression of SPATA24 mRNA	CTD	PMID:30912803
Spata24	Mouse	urethane	decreases expression	ISO	SPATA24 (Homo sapiens)	6480464	Urethane results in decreased expression of SPATA24 mRNA	CTD	PMID:28818685
Spata24	Mouse	vorinostat	increases expression	ISO	SPATA24 (Homo sapiens)	6480464	vorinostat results in increased expression of SPATA24 mRNA	CTD	PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata24	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015
Spata24	Mouse	cell differentiation	involved_in	IEA	UniProtKB-KW:KW-0221	2290270		UniProt	GO_REF:0000043
Spata24	Mouse	spermatogenesis	involved_in	IEA	UniProtKB-KW:KW-0744	2290270		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata24	Mouse	cytoplasm	is_active_in	IBA	PANTHER:PTN002172474 more ...	2290270		GO_Central	GO_REF:0000033
Spata24	Mouse	cytoplasm	located_in	IDA		2290270	PMID:18418073	MGI	PMID:18418073
Spata24	Mouse	cytosol	located_in	IEA	UniProtKB:Q86W54 and ensembl:ENSP00000414920	2290270		Ensembl	GO_REF:0000107
Spata24	Mouse	cytosol	located_in	ISO	UniProtKB:Q86W54	2290270		GO_Central	GO_REF:0000119
Spata24	Mouse	male germ cell nucleus	located_in	IDA		2290270	PMID:18418073	MGI	PMID:18418073
Spata24	Mouse	nucleolus	located_in	IEA	UniProtKB-SubCell:SL-0188	2290270		UniProt	GO_REF:0000044
Spata24	Mouse	nucleoplasm	located_in	IEA	UniProtKB-SubCell:SL-0190	2290270		UniProt	GO_REF:0000044
Spata24	Mouse	nucleoplasm	located_in	ISO	UniProtKB:Q86W54	2290270		GO_Central	GO_REF:0000119
Spata24	Mouse	nucleus	is_active_in	IBA	PANTHER:PTN002172474 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata24	Mouse	DNA binding	enables	IDA		2290270	PMID:18418073	MGI	PMID:18418073
Spata24	Mouse	DNA binding	enables	IBA	PANTHER:PTN002172474 and MGI:1918492	2290270		GO_Central	GO_REF:0000033
Spata24	Mouse	identical protein binding	enables	IPI	PR:Q6P926	2290270	PMID:18418073	MGI	PMID:18418073
Spata24	Mouse	protein binding	enables	IPI	MGI:108515 more ...	2290270	PMID:18418073	MGI	PMID:18418073

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Spata24	Mouse	cataract		IEA		5509061		MGI
Spata24	Mouse	decreased locomotor activity		IEA		5509061		MGI
Spata24	Mouse	decreased neutrophil cell number		IEA		5509061		MGI
Spata24	Mouse	reproductive system phenotype		IAGP		5509061		MGI	PMID:32588039

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:10349636	PMID:10725249	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073	PMID:18418073
PMID:18799693	PMID:19515240	PMID:21565611	PMID:21677750	PMID:21873635	PMID:24194600	PMID:32588039	PMID:38355793

Spata24
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	35,789,742 - 35,795,239 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	35,789,742 - 35,795,239 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	35,656,689 - 35,662,186 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	35,656,689 - 35,662,186 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	35,816,343 - 35,821,840 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	35,782,664 - 35,788,160 (-)	NCBI		MGSCv36	mm8
Celera	18	36,112,811 - 36,118,308 (-)	NCBI		Celera
Cytogenetic Map	18	B2	NCBI
cM Map	18	19.2	NCBI

SPATA24
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	139,392,500 - 139,404,089 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	139,396,563 - 139,404,089 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	138,732,456 - 138,739,778 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	138,760,355 - 138,767,652 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	134,852,451 - 134,859,487 (-)	NCBI		Celera
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	133,922,187 - 133,929,509 (-)	NCBI		HuRef
CHM1_1	5	138,165,076 - 138,172,396 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	139,922,301 - 139,929,892 (-)	NCBI		T2T-CHM13v2.0

Spata24
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,523,133 - 27,531,375 (-)	NCBI		GRCr8
mRatBN7.2	18	27,249,047 - 27,257,129 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,248,609 - 27,257,124 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	27,382,358 - 27,384,471 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	28,144,481 - 28,146,594 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	27,479,363 - 27,481,476 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	28,446,592 - 28,454,724 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,446,589 - 28,454,756 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	28,159,702 - 28,167,849 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	28,279,137 - 28,281,228 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	28,305,834 - 28,307,874 (-)	NCBI
Celera	18	26,988,494 - 26,990,607 (-)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

Spata24
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	1,157,089 - 1,165,636 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	1,157,089 - 1,163,897 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPATA24
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	134,663,654 - 134,671,089 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	132,803,206 - 132,813,799 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	134,767,828 - 134,775,171 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	140,890,255 - 140,897,927 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	140,890,610 - 140,897,927 (-)	Ensembl	panpan1.1		panPan2

SPATA24
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	34,719,710 - 34,724,880 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	34,719,713 - 34,724,843 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	31,822,002 - 31,827,188 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	35,173,790 - 35,178,974 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	35,173,795 - 35,178,956 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	32,226,237 - 32,231,421 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	33,092,537 - 33,097,724 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	33,844,160 - 33,849,346 (-)	NCBI		UU_Cfam_GSD_1.0

Spata24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	153,121,278 - 153,127,313 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	8,483,834 - 8,490,249 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	8,484,192 - 8,490,205 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA24
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	141,286,880 - 141,293,227 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	141,286,870 - 141,293,232 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	147,117,481 - 147,123,861 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATA24
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	42,069,223 - 42,077,304 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	42,069,256 - 42,076,480 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	35,811,367 - 35,818,748 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata24
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	32,201,286 - 32,207,177 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	32,201,285 - 32,207,197 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Spata24
119 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	307
Count of miRNA genes:	258
Interacting mature miRNAs:	269
Transcripts:	ENSMUST00000025209, ENSMUST00000096573
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558743	Kcal1_m	kilocalorie 1 (mouse)			Not determined		18	19018874	53018992	Mouse
1302163	Bmd16_m	bone mineral density 16 (mouse)			Not determined		18	29667914	63668060	Mouse
11532716	Sluc41c_m	susceptibility to lung cancer 41c (mouse)					18	22619914	56620127	Mouse
11532715	Sluc41b_m	susceptibility to lung cancer 41b (mouse)					18	22619914	56620127	Mouse
11532710	Sluc41a_m	susceptibility to lung cancer 41a (mouse)					18	22619914	56620127	Mouse
25823171	Hrsq10_m	host response to SARS QTL 10, D4% weight (mouse)					18	27241115	58827077	Mouse
11532709	Sluc41_m	susceptibility to lung cancer 41 (mouse)					18	20953694	57590708	Mouse
1301400	Lmr13_m	leishmaniasis resistance 13 (mouse)			Not determined		18	28109380	62109518	Mouse
25823174	Hrsq11_m	host response to SARS QTL 11, log titer (mouse)					18	27241115	58827077	Mouse
1300638	Im7_m	immunoregulatory 7 (mouse)			Not determined		18	19018874	53018992	Mouse
1558873	Hrtfm7_m	heart failure modifier 7 (mouse)			Not determined		18	8086964	42087106	Mouse
25823173	Hrsq12_m	host response to SARS QTL 12, hemorrhage (mouse)					18	24895881	78339555	Mouse
1300994	Pvcan3_m	protection against vaginal candidiasis 3 (mouse)			Not determined		18	16199640	50199776	Mouse
1301570	Sluc14_m	susceptibility to lung cancer 14 (mouse)			Not determined		18	22619914	56620127	Mouse
13504732	Cath6_m	carotid atherosclerosis 6 (mouse)					18	13637126	47637126	Mouse
1558849	W3q15_m	weight 3 weeks QTL 15 (mouse)			Not determined		18	5041119	61272643	Mouse
12880412	V125Dq12_m	vitamin D active form serum level QTL 12 (mouse)					18	30233067	64233067	Mouse
1301771	Pcyts6_m	plasmacytoma susceptibility 6 (mouse)			Not determined		18	35658632	69658851	Mouse
1300877	Adip8_m	adiposity 8 (mouse)			Not determined		18	22619914	56620127	Mouse
4141857	Mhysq5_m	male hybrid sterility QTL 5 (mouse)			Not determined			28130604	62130739	Mouse
1300685	Scc5_m	colon tumor susceptibility 5 (mouse)			Not determined		18	31988480	65988629	Mouse
1301307	Phospq1_m	phospholipid QTL 1 (mouse)			Not determined		18	18139704	52139859	Mouse
1301950	Otx2m1_m	orthodenticle homolog 2 (Drosophila) modifier 1 (mouse)			Not determined		18	21568682	36187740	Mouse
1357690	Vtbt19_m	vertebral trabecular bone trait 19 (mouse)			Not determined		18	33091043	67091221	Mouse
4142031	Moen1_m	modifier of engrailed QTL 1 (mouse)			Not determined		18	24115560	58115730	Mouse
12904950	Smmq3_m	soleus muscle mass QTL 3 (mouse)					18	26056875	60056875	Mouse
25823167	Hrsq5_m	host response to SARS QTL 5, D3% weight (mouse)					18	27241115	58827077	Mouse
1357603	Mom3_m	modifier of Min 3 (mouse)			Not determined		18	14030023	67098962	Mouse
13463476	Hctq8_m	hematocrit QTL 8 (mouse)					18	21217580	55217727	Mouse
27226723	Tibw9_m	tibia width 9, proximal, 16 week (mouse)					18	3200000	60933072	Mouse

AU016220

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	18	35,660,229 - 35,660,316	UniSTS	GRCm38
MGSCv37	18	35,819,883 - 35,819,970	UniSTS	GRCm37
Celera	18	36,116,351 - 36,116,438	UniSTS
Cytogenetic Map	18	B3	UniSTS

5133400G04Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	18	B3	UniSTS
cM Map	18		UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_027733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_029485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006526248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK016341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK017218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW493519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY730532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC060950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM569619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU961109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000025209 ⟹ ENSMUSP00000025209

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	35,789,742 - 35,795,239 (-)	Ensembl
GRCm38.p6 Ensembl	18	35,656,689 - 35,662,186 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000096573 ⟹ ENSMUSP00000094324

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	35,793,069 - 35,795,239 (-)	Ensembl
GRCm38.p6 Ensembl	18	35,660,016 - 35,662,186 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000235760 ⟹ ENSMUSP00000158003

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	35,789,852 - 35,795,184 (-)	Ensembl
GRCm38.p6 Ensembl	18	35,656,799 - 35,662,131 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000235803 ⟹ ENSMUSP00000157985

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	35,793,070 - 35,795,209 (-)	Ensembl
GRCm38.p6 Ensembl	18	35,660,017 - 35,662,156 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000236539 ⟹ ENSMUSP00000157452

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	35,789,746 - 35,793,880 (-)	Ensembl
GRCm38.p6 Ensembl	18	35,656,693 - 35,660,827 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000236574 ⟹ ENSMUSP00000157388

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	35,793,110 - 35,795,175 (-)	Ensembl
GRCm38.p6 Ensembl	18	35,660,057 - 35,662,122 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000236971 ⟹ ENSMUSP00000157683

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	35,793,109 - 35,795,184 (-)	Ensembl
GRCm38.p6 Ensembl	18	35,660,056 - 35,662,131 (-)	Ensembl

RefSeq Acc Id:

NM_027733 ⟹ NP_082009

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	35,793,069 - 35,795,239 (-)	NCBI
GRCm38	18	35,660,016 - 35,662,186 (-)	NCBI
MGSCv37	18	35,816,343 - 35,821,840 (-)	RGD
Celera	18	36,112,811 - 36,118,308 (-)	RGD
cM Map	18		ENTREZGENE

Sequence:

show sequence

GGCGACGGATGAGGCGCGCAGCAGGAGGCCATTTCCAACGAGCCAGCGGGGGCAAAAGATGGCGACGCCCCTTGGGTGGTCGCAGGGGGGCTCTGGATCAGTGTGTCTCGCCTTCGATCAACTGCGGG
ACGTGATTGAATCTCAGGAGGAACTTATCCACCAGCTGAGGAATGTGATGGTTCTCCAGGATGAGAATTTTGTCAGTAAAGAAGAATTCCATGAAATAGAGAAGAAACTGGTGGAGGAGAAAGCTGCT
CATGCCAAAACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTTACAGTTTGCTCTGGGAGAGGTGGAGGTGCTGTCCAAGCAGCTGGAGAAAGAGAAGATGGCCTTTGAAAAAGCGCTCTCCAGTGT
CAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGGTAGGCGGGAGGCCCGTGCTGCCCCCCAAGTTAACATACACGGGCTCTTTACCAACAGCCCAATGACGG
TGCCAAAAGCAGGGCTCTACCCCAACTTCTGCCCCCGGCTGAGGATACAGGCAAGTCCAGTCCTTCGAAAGTGCCTTCAGGGACCAGGCAGGTCACGGAAATGATGGACATGATCAGATCAGCGTGCG
GTATTCTTCACAGCCATAAAGGAACGGGCTCGCTCCCATTTTTCTTGAAACATACAACCTTCTTAGTCCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_029485 ⟹ NP_083761

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	35,789,742 - 35,795,239 (-)	NCBI
GRCm38	18	35,656,689 - 35,662,186 (-)	ENTREZGENE
MGSCv37	18	35,816,343 - 35,821,840 (-)	RGD
Celera	18	36,112,811 - 36,118,308 (-)	RGD
cM Map	18		ENTREZGENE

Sequence:

show sequence

GGCGACGGATGAGGCGCGCAGCAGGAGGCCATTTCCAACGAGCCAGCGGGGGCAAAAGATGGCGACGCCCCTTGGGTGGTCGCAGGGGGGCTCTGGATCAGTGTGTCTCGCCTTCGATCAACTGCGGG
ACGTGATTGAATCTCAGGAGGAACTTATCCACCAGCTGAGGAATGTGATGGTTCTCCAGGATGAGAATTTTGTCAGTAAAGAAGAATTCCATGAAATAGAGAAGAAACTGGTGGAGGAGAAAGCTGCT
CATGCCAAAACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTTACAGTTTGCTCTGGGAGAGGTGGAGGTGCTGTCCAAGCAGCTGGAGAAAGAGAAGATGGCCTTTGAAAAAGCGCTCTCCAGTGT
CAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGAAATTGAATCCCACATTATAAAGCAAGAAGATATACTTAATGGCAAAGAGAATGAGATTAAAGAGTTGC
AGCAGGTTATCAGCCAGCAGAAACAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACCTACATGGCCCAGGTGCTGGATCAGAAGCGTAAGAAAGCCACAGGAATGCGT
CGGGCCCGTAGCCGTCAGTGTTCCAGGGAGAAATAAACTGCTGGTTATCTTCCTGTTCTCTAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006526248 ⟹ XP_006526311

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	35,789,742 - 35,795,228 (-)	NCBI
GRCm38	18	35,656,689 - 35,662,171 (-)	NCBI

Sequence:

show sequence

AGGCGCGCAGCAGGAGGCCATTTCCAACGAGCCAGCGGGGGCAAAAGATGGCGACGCCCCTTGGGTGGTCGCAGGGGGGCTCTGGATCAGTGTGTCTCGCCTTCGATCAACTGCGGGACGTGATTGAA
TCTCAGGAGGAACTTATCCACCAGCTGAGGAATGTGCCCCTGTCCCTTCCTGAGCCAGGCTCTGTTGCAGATGGTTCTCCAGGATGAGAATTTTGTCAGTAAAGAAGAATTCCATGAAATAGAGAAGA
AACTGGTGGAGGAGAAAGCTGCTCATGCCAAAACCAAAGCCCTCCTGGCCAAGGAAGAAGAGAAGTTACAGTTTGCTCTGGGAGAGGTGGAGGTGCTGTCCAAGCAGCTGGAGAAAGAGAAGATGGCC
TTTGAAAAAGCGCTCTCCAGTGTCAAGAGCAGAGTCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGAAATTGAATCCCACATTATAAAGCAAGAAGATATACTTAATGGCAA
AGAGAATGAGATTAAAGAGTTGCAGCAGGTTATCAGCCAGCAGAAACAGAATTTCAGGAATCACATATCTGACTTCCGGATCCAAAAGCAGCAGGAGACCTACATGGCCCAGGTGCTGGATCAGAAGC
GTAAGAAAGCCACAGGAATGCGTCGGGCCCGTAGCCGTCAGTGTTCCAGGGAGAAATAAACTGCTGGTTATCTTCCTGTTCTCTA

hide sequence


Protein RefSeqs	NP_082009	(Get FASTA)	NCBI Sequence Viewer
	NP_083761	(Get FASTA)	NCBI Sequence Viewer
	XP_006526311	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH60950	(Get FASTA)	NCBI Sequence Viewer
	AAV97890	(Get FASTA)	NCBI Sequence Viewer
	BAB30197	(Get FASTA)	NCBI Sequence Viewer
	EDK97138	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000025209
	ENSMUSP00000025209.5
	ENSMUSP00000094324
	ENSMUSP00000094324.3
	ENSMUSP00000157452
GenBank Protein	Q6P926	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_083761 ⟸ NM_029485
- Peptide Label:	isoform 2
- UniProtKB:	Q5MMR1 (UniProtKB/Swiss-Prot), Q9D4P6 (UniProtKB/Swiss-Prot), Q6P926 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MATPLGWSQGGSGSVCLAFDQLRDVIESQEELIHQLRNVMVLQDENFVSKEEFHEIEKKLVEEKAAHAKTKALLAKEEEKLQFALGEVEVLSKQLEKEKMAFEKALSSVKSRVLQESSKKDQLITKCN EIESHIIKQEDILNGKENEIKELQQVISQQKQNFRNHISDFRIQKQQETYMAQVLDQKRKKATGMRRARSRQCSREK hide sequence

RefSeq Acc Id:	NP_082009 ⟸ NM_027733
- Peptide Label:	isoform 1
- UniProtKB:	A0A494B8X0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATPLGWSQGGSGSVCLAFDQLRDVIESQEELIHQLRNVMVLQDENFVSKEEFHEIEKKLVEEKAAHAKTKALLAKEEEKLQFALGEVEVLSKQLEKEKMAFEKALSSVKSRVLQESSKKDQLITKCN GRREARAAPQVNIHGLFTNSPMTVPKAGLYPNFCPRLRIQASPVLRKCLQGPGRSRK hide sequence

RefSeq Acc Id:	XP_006526311 ⟸ XM_006526248
- Peptide Label:	isoform X1
- UniProtKB:	A0A494B928 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCPCPFLSQALLQMVLQDENFVSKEEFHEIEKKLVEEKAAHAKTKALLAKEEEKLQFALGEVEV LSKQLEKEKMAFEKALSSVKSRVLQESSKKDQLITKCNEIESHIIKQEDILNGKENEIKELQQVISQQKQNFRNHISDFRIQKQQETYMAQVLDQKRKKATGMRRARSRQCSREK hide sequence

Ensembl Acc Id:

ENSMUSP00000157683 ⟸ ENSMUST00000236971

Ensembl Acc Id:

ENSMUSP00000157388 ⟸ ENSMUST00000236574

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P926-F1-model_v2	AlphaFold	Q6P926	1-205	view protein structure

RGD ID:

13677428

Promoter ID:

EPDNEW_M22864

Type:

initiation region

Name:

Spata24_1

Description:

Mus musculus spermatogenesis associated 24 , transcript variant1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	18	35,662,157 - 35,662,217	EPDNEW

RGD ID:

6828989

Promoter ID:

MM_KWN:24934

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Lung, MEF_B6

Transcripts:

NM_027733, NM_029485, UC008EMP.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	18	35,821,499 - 35,821,999 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000024352	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000025209	ENTREZGENE
	ENSMUST00000025209.12	UniProtKB/Swiss-Prot
	ENSMUST00000096573	ENTREZGENE
	ENSMUST00000096573.4	UniProtKB/Swiss-Prot
	ENSMUST00000236539	ENTREZGENE
InterPro	SPATA24	UniProtKB/Swiss-Prot
KEGG Report	mmu:71242	UniProtKB/Swiss-Prot
MGD	MGI:1918492	ENTREZGENE
NCBI Gene	71242	ENTREZGENE
PANTHER	PTHR35155	UniProtKB/Swiss-Prot
	SPERMATOGENESIS-ASSOCIATED PROTEIN 24	UniProtKB/Swiss-Prot
Pfam	SPATA24	UniProtKB/Swiss-Prot
PhenoGen	Spata24	PhenoGen
UniProt	A0A494B8X0	ENTREZGENE, UniProtKB/TrEMBL
	A0A494B928	ENTREZGENE, UniProtKB/TrEMBL
	A0A494B9K0_MOUSE	UniProtKB/TrEMBL
	A0A494BA86_MOUSE	UniProtKB/TrEMBL
	A0A494BAA1_MOUSE	UniProtKB/TrEMBL
	Q5MMR1	ENTREZGENE
	Q6P926	ENTREZGENE
	Q9D4P6	ENTREZGENE
	SPA24_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q5MMR1	UniProtKB/Swiss-Prot
	Q9D4P6	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

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