BC051076 (cDNA sequence BC051076) - Rat Genome Database

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Gene: BC051076 (cDNA sequence BC051076) Mus musculus
Analyze
Symbol: BC051076
Name: cDNA sequence BC051076
RGD ID: 1322488
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,105,481 - 88,114,211 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,111,344 - 88,114,211 (+)EnsemblGRCm39 Ensembl
GRCm38587,957,622 - 87,966,352 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl587,963,485 - 87,966,352 (+)EnsemblGRCm38mm10GRCm38
MGSCv37588,391,724 - 88,395,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36587,562,021 - 87,570,751 (+)NCBIMGSCv36mm8
MGSCv36589,032,183 - 89,040,913 (+)NCBIMGSCv36mm8
Cytogenetic Map5E1NCBI
cM Map543.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BC051076Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BC051076Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BC051076Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:12477932   PMID:21267068  



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Variants in BC051076
392 total Variants

Predicted Target Of
Summary Value
Count of predictions:431
Count of miRNA genes:324
Interacting mature miRNAs:338
Transcripts:ENSMUST00000069773
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse

1 to 10 of 54 rows






Ensembl Acc Id: ENSMUST00000069773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl588,111,344 - 88,114,208 (+)Ensembl
GRCm38.p6 Ensembl587,963,485 - 87,966,349 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl588,111,344 - 88,114,211 (+)Ensembl
GRCm38.p6 Ensembl587,963,485 - 87,966,352 (+)Ensembl
RefSeq Acc Id: XR_140737
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39588,105,481 - 88,114,211 (+)NCBI
GRCm38587,957,622 - 87,966,352 (+)NCBI
Sequence:
GenBank Protein AAH51076 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000055961 Ensembl
MGD MGI:2670982 ENTREZGENE
NCBI Gene 243090 ENTREZGENE
PhenoGen BC051076 PhenoGen
RNAcentral URS0000811E4E RNACentral
  URS0000A8DB46 RNACentral
UniProt Q80XE3_MOUSE UniProtKB/TrEMBL