Plcd3 (phospholipase C, delta 3) - Rat Genome Database

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Gene: Plcd3 (phospholipase C, delta 3) Mus musculus
Analyze
Symbol: Plcd3
Name: phospholipase C, delta 3
RGD ID: 1322077
MGI Page MGI
Description: Predicted to enable phosphatidylinositol phospholipase C activity. Acts upstream of or within angiogenesis; labyrinthine layer blood vessel development; and regulation of cell population proliferation. Predicted to be located in nucleoplasm. Predicted to be active in plasma membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and sensory organ. Orthologous to human PLCD3 (phospholipase C delta 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3; 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-3; 2610205J15Rik; mKIAA1964; phosphoinositide phospholipase C-delta-3; phospholipase C-delta-3; PLC-delta-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,960,062 - 102,992,484 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11102,961,130 - 102,992,484 (-)EnsemblGRCm39 Ensembl
GRCm3811103,070,296 - 103,101,710 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,070,304 - 103,101,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,931,610 - 102,962,972 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,886,400 - 102,917,692 (-)NCBIMGSCv36mm8
Celera11114,788,919 - 114,811,158 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1166.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cleavage furrow  (IEA)
cytoplasm  (IEA)
nucleoplasm  (IEA,ISO)
plasma membrane  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:2033248   PMID:8672127   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15226823   PMID:15368895  
PMID:16141072   PMID:16141073   PMID:16314520   PMID:17295603   PMID:18177742   PMID:18799693   PMID:21035487   PMID:21187285   PMID:21267068   PMID:21873635   PMID:22723964   PMID:24810051  
PMID:32325033  


Genomics

Comparative Map Data
Plcd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,960,062 - 102,992,484 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11102,961,130 - 102,992,484 (-)EnsemblGRCm39 Ensembl
GRCm3811103,070,296 - 103,101,710 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,070,304 - 103,101,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,931,610 - 102,962,972 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,886,400 - 102,917,692 (-)NCBIMGSCv36mm8
Celera11114,788,919 - 114,811,158 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1166.71NCBI
PLCD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381745,108,959 - 45,132,515 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1745,108,959 - 45,133,354 (-)EnsemblGRCh38hg38GRCh38
GRCh371743,186,327 - 43,209,882 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361740,544,534 - 40,565,417 (-)NCBINCBI36Build 36hg18NCBI36
Build 341740,544,543 - 40,565,391NCBI
Celera1739,898,162 - 39,919,051 (-)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1738,952,185 - 38,972,987 (-)NCBIHuRef
CHM1_11743,424,536 - 43,445,418 (-)NCBICHM1_1
T2T-CHM13v2.01745,962,835 - 45,986,399 (-)NCBIT2T-CHM13v2.0
Plcd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81088,526,802 - 88,548,116 (-)NCBIGRCr8
mRatBN7.21088,026,707 - 88,048,080 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,026,740 - 88,048,296 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,062,952 - 93,084,281 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01092,529,623 - 92,550,923 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01087,922,965 - 87,944,272 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01091,164,778 - 91,186,067 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,164,812 - 91,186,054 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01090,937,117 - 90,958,001 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,234,651 - 92,275,433 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,249,509 - 92,291,067 (-)NCBI
Celera1086,728,695 - 86,749,683 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Plcd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,822,761 - 17,827,846 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,822,345 - 17,827,848 (-)NCBIChiLan1.0ChiLan1.0
PLCD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21919,704,918 - 19,725,778 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11721,673,497 - 21,694,350 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01712,194,761 - 12,215,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11712,370,389 - 12,391,667 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1712,371,299 - 12,390,691 (+)Ensemblpanpan1.1panPan2
PLCD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1918,399,946 - 18,419,630 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl918,400,039 - 18,419,560 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha917,784,845 - 17,804,314 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0919,073,110 - 19,092,576 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl919,073,110 - 19,092,582 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1917,951,365 - 17,970,806 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0918,130,204 - 18,149,674 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0918,286,182 - 18,305,568 (+)NCBIUU_Cfam_GSD_1.0
Plcd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560217,748,001 - 17,768,280 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365411,426,580 - 1,446,286 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365411,426,590 - 1,446,286 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLCD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1218,281,502 - 18,302,483 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11218,281,507 - 18,305,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21218,530,472 - 18,551,197 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLCD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11661,277,813 - 61,300,891 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1661,277,917 - 61,300,303 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607732,024,853 - 32,046,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plcd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624795270,722 - 282,390 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624795270,760 - 282,789 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plcd3
1121 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1930
Count of miRNA genes:614
Interacting mature miRNAs:765
Transcripts:ENSMUST00000103077, ENSMUST00000124740, ENSMUST00000128650, ENSMUST00000142970, ENSMUST00000143012
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1300957Pbd1_mpeak bone density 1 (mouse)Not determined11102344123112384123Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse

Markers in Region
Plcd3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E1UniSTS
cM Map1163.0UniSTS
UniSTS:236752  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,070,337 - 103,070,612UniSTSGRCm38
MGSCv3711102,931,651 - 102,931,926UniSTSGRCm37
Celera11114,788,960 - 114,789,235UniSTS
Cytogenetic Map11E1UniSTS
cM Map1163.0UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Plcd3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000103077   ⟹   ENSMUSP00000099366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11102,961,130 - 102,992,484 (-)Ensembl
GRCm38.p6 Ensembl11103,070,304 - 103,101,658 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11102,961,411 - 102,962,576 (-)Ensembl
GRCm38.p6 Ensembl11103,070,585 - 103,071,750 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128650   ⟹   ENSMUSP00000117455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11102,961,130 - 102,969,120 (-)Ensembl
GRCm38.p6 Ensembl11103,070,304 - 103,078,294 (-)Ensembl
Ensembl Acc Id: ENSMUST00000142970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11102,972,556 - 102,992,417 (-)Ensembl
GRCm38.p6 Ensembl11103,081,730 - 103,101,591 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143012
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11102,971,379 - 102,992,444 (-)Ensembl
GRCm38.p6 Ensembl11103,080,553 - 103,101,618 (-)Ensembl
RefSeq Acc Id: NM_001361706   ⟹   NP_001348635
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,961,122 - 102,971,774 (-)NCBI
GRCm3811103,070,296 - 103,080,948 (-)NCBI
Sequence:
RefSeq Acc Id: NM_152813   ⟹   NP_690026
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,961,122 - 102,992,484 (-)NCBI
GRCm3811103,070,296 - 103,101,658 (-)NCBI
MGSCv3711102,931,610 - 102,962,972 (-)RGD
Celera11114,788,919 - 114,811,158 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534308   ⟹   XP_006534371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,960,062 - 102,992,478 (-)NCBI
GRCm3811103,070,296 - 103,101,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534309   ⟹   XP_006534372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,960,062 - 102,988,608 (-)NCBI
GRCm3811103,070,296 - 103,097,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314788   ⟹   XP_017170277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,960,062 - 102,969,222 (-)NCBI
GRCm3811103,070,296 - 103,078,396 (-)NCBI
Sequence:
RefSeq Acc Id: NP_690026   ⟸   NM_152813
- Peptide Label: isoform 1
- UniProtKB: Q8K2J0 (UniProtKB/Swiss-Prot),   Q8BL19 (UniProtKB/Swiss-Prot),   Q69Z55 (UniProtKB/Swiss-Prot),   Q3UME8 (UniProtKB/Swiss-Prot),   A2AHR1 (UniProtKB/Swiss-Prot),   A2AHR0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534371   ⟸   XM_006534308
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534372   ⟸   XM_006534309
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017170277   ⟸   XM_017314788
- Peptide Label: isoform X3
- UniProtKB: F7AAE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001348635   ⟸   NM_001361706
- Peptide Label: isoform 2
Ensembl Acc Id: ENSMUSP00000117455   ⟸   ENSMUST00000128650
Ensembl Acc Id: ENSMUSP00000099366   ⟸   ENSMUST00000103077
Protein Domains
C2   EF-hand   PH   PI-PLC X-box   PI-PLC Y-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K2J0-F1-model_v2 AlphaFold Q8K2J0 1-785 view protein structure

Promoters
RGD ID:6821565
Promoter ID:MM_KWN:10042
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000006881
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,932,621 - 102,933,937 (-)MPROMDB
RGD ID:6821566
Promoter ID:MM_KWN:10043
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC007LTE.1,   UC007LTG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,939,871 - 102,940,371 (-)MPROMDB
RGD ID:6846882
Promoter ID:MM_ACW:9039
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:PLCD3.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,958,471 - 102,958,971 (-)MPROMDB
RGD ID:6821563
Promoter ID:MM_KWN:10044
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   3T3L1_Day6,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4,   Spleen
Transcripts:ENSMUST00000021320,   NM_152813,   OTTMUST00000006879,   OTTMUST00000006880
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,962,831 - 102,964,332 (-)MPROMDB
RGD ID:8676944
Promoter ID:EPDNEW_M16502
Type:initiation region
Name:Plcd3_1
Description:Mus musculus phospholipase C, delta 3 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811103,101,623 - 103,101,683EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107451 AgrOrtholog
Ensembl Genes ENSMUSG00000020937 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103077 ENTREZGENE
  ENSMUST00000103077.2 UniProtKB/Swiss-Prot
  ENSMUST00000128650 ENTREZGENE
  ENSMUST00000128650.8 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.20.20.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand UniProtKB/Swiss-Prot
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  PI-PLC_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLC-delta3_EF-hand UniProtKB/Swiss-Prot
  PLC-like_Pdiesterase_TIM-brl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_C_PInositol-sp_X_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_C_Pinositol-sp_Y UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72469 UniProtKB/Swiss-Prot
MGD MGI:107451 ENTREZGENE
NCBI Gene Plcd3 ENTREZGENE
PANTHER PTHR10336 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10336:SF33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_10 UniProtKB/Swiss-Prot
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI-PLC-X UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI-PLC-Y UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Plcd3 PhenoGen
PRINTS PHPHLIPASEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PIPLC_X_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIPLC_Y_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PLCXc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLCYc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF47473 UniProtKB/Swiss-Prot
  SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AHR0 ENTREZGENE
  A2AHR1 ENTREZGENE
  F7AAE0 ENTREZGENE, UniProtKB/TrEMBL
  PLCD3_MOUSE UniProtKB/Swiss-Prot
  Q3UME8 ENTREZGENE
  Q69Z55 ENTREZGENE
  Q8BL19 ENTREZGENE
  Q8K2J0 ENTREZGENE
UniProt Secondary A2AHR0 UniProtKB/Swiss-Prot
  A2AHR1 UniProtKB/Swiss-Prot
  Q3UME8 UniProtKB/Swiss-Prot
  Q69Z55 UniProtKB/Swiss-Prot
  Q8BL19 UniProtKB/Swiss-Prot