Ctdnep1 (CTD nuclear envelope phosphatase 1)

Advanced Search (OLGA)

Gene: Ctdnep1 (CTD nuclear envelope phosphatase 1) Mus musculus

Analyze

Symbol:

Ctdnep1

Name:

CTD nuclear envelope phosphatase 1

RGD ID:

1320918

MGI Page

MGI

Description:

Predicted to enable protein serine/threonine phosphatase activity. Acts upstream of or within gamete generation; mesoderm development; and positive regulation of canonical Wnt signaling pathway. Located in cytoplasm and nucleus. Is expressed in limb mesenchyme and skeleton. Orthologous to human CTDNEP1 (CTD nuclear envelope phosphatase 1).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

2610507E10Rik; Dul; Dullard; serine/threonine-protein phosphatase dullard

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTDNEP1 (CTD nuclear envelope phosphatase 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Ctdnep1 (CTD nuclear envelope phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctdnep1 (CTD nuclear envelope phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTDNEP1 (CTD nuclear envelope phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTDNEP1 (CTD nuclear envelope phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctdnep1 (CTD nuclear envelope phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTDNEP1 (CTD nuclear envelope phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctdnep1 (CTD nuclear envelope phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ctdnep1 (CTD nuclear envelope phosphatase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CTDNEP1 (CTD nuclear envelope phosphatase 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ctdnep1b (CTD nuclear envelope phosphatase 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	ctdnep1a (CTD nuclear envelope phosphatase 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	NEM1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cnep-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Dd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ctdnep1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Gm6872

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	69,871,994 - 69,881,427 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	69,871,982 - 69,881,427 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	69,981,168 - 69,990,601 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	69,981,156 - 69,990,601 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	69,794,670 - 69,804,103 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	69,797,363 - 69,806,796 (+)	NCBI		MGSCv36	mm8
Celera	11	77,529,199 - 77,538,411 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	42.95	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

common variable immunodeficiency (ISO)

congenital myasthenic syndrome 2A (ISO)

dyskeratosis congenita (ISO)

Faundes-Banka Syndrome (ISO)

intellectual disability (ISO)

Li-Fraumeni syndrome (ISO)

very long chain acyl-CoA dehydrogenase deficiency (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

4,4'-diaminodiphenylmethane (EXP)

acrylamide (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

beta-lapachone (ISO)

bisphenol A (ISO)

C60 fullerene (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

clofibrate (EXP)

cocaine (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dioxygen (EXP)

disodium selenite (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

folic acid (EXP)

ivermectin (ISO)

nickel subsulfide (ISO)

ozone (ISO)

paracetamol (EXP)

resveratrol (ISO)

selenium atom (ISO)

senecionine (EXP)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sulforaphane (EXP)

sunitinib (ISO)

triphenyl phosphate (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

canonical Wnt signaling pathway (IMP)

chromatin remodeling (IEA)

gamete generation (IGI,IMP)

mesoderm development (IMP)

nuclear envelope organization (ISO,ISS)

positive regulation of canonical Wnt signaling pathway (IMP)

positive regulation of triglyceride biosynthetic process (ISO,ISS)

protein dephosphorylation (ISO)

protein localization to nucleus (ISO,ISS)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

cytoplasm (IDA,ISO,ISS)

endoplasmic reticulum membrane (ISO,ISS)

lipid droplet (IEA,ISO)

Nem1-Spo7 phosphatase complex (ISO,ISS)

nuclear envelope (ISO,ISS)

nuclear membrane (ISO,ISS)

nucleus (IDA)

Molecular Function

calmodulin-dependent protein phosphatase activity (IEA)

histone H2AXS140 phosphatase activity (IEA)

MAP kinase serine/threonine phosphatase activity (IEA)

myosin phosphatase activity (IEA)

phosphoprotein phosphatase activity (ISS)

protein binding (IPI)

protein serine/threonine phosphatase activity (IBA,ISO,ISS)

RNA polymerase II CTD heptapeptide repeat S2 phosphatase activity (IEA)

RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity (IEA)

RNA polymerase II CTD heptapeptide repeat S7 phosphatase activity (IEA)

RNA polymerase II CTD heptapeptide repeat T4 phosphatase activity (IEA)

RNA polymerase II CTD heptapeptide repeat Y1 phosphatase activity (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal embryonic tissue morphology (IAGP)

abnormal extraembryonic coelom morphology (IAGP)

abnormal extraembryonic mesoderm development (IAGP)

abnormal head fold morphology (IAGP)

abnormal kidney morphology (IAGP)

abnormal nephron morphology (IAGP)

abnormal parietal endoderm morphology (IAGP)

abnormal primordial germ cell morphology (IAGP)

abnormal proximal convoluted tubule morphology (IAGP)

absent allantois (IAGP)

absent amnion (IAGP)

decreased kidney apoptosis (IAGP)

decreased kidney weight (IAGP)

decreased primordial germ cell number (IAGP)

embryonic lethality between somite formation and embryo turning, incomplete penetrance (IAGP)

embryonic lethality during organogenesis, complete penetrance (IAGP)

premature death (IAGP)

renal glomerulus atrophy (IAGP)

small kidney (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:12083771	PMID:12477932	PMID:14610273	PMID:15782199	PMID:16141072	PMID:16141073	PMID:17967808	PMID:18799693
PMID:21873635	PMID:23360989	PMID:23469192	PMID:23657815	PMID:25155999	PMID:29521016	PMID:32105214	PMID:32554809	PMID:32968282	PMID:36765089	PMID:38749090

Genomics

Comparative Map Data

Ctdnep1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	69,871,994 - 69,881,427 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	69,871,982 - 69,881,427 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	69,981,168 - 69,990,601 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	69,981,156 - 69,990,601 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	69,794,670 - 69,804,103 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	69,797,363 - 69,806,796 (+)	NCBI		MGSCv36	mm8
Celera	11	77,529,199 - 77,538,411 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	42.95	NCBI

CTDNEP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	7,243,591 - 7,251,978 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	7,243,591 - 7,252,491 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	7,146,910 - 7,155,297 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	7,087,882 - 7,095,983 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	7,087,882 - 7,095,983	NCBI
Celera	17	7,171,550 - 7,179,904 (-)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	7,038,309 - 7,046,665 (-)	NCBI		HuRef
CHM1_1	17	7,155,699 - 7,164,051 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	7,144,513 - 7,152,901 (-)	NCBI		T2T-CHM13v2.0

Ctdnep1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	55,203,047 - 55,212,469 (+)	NCBI		GRCr8
mRatBN7.2	10	54,704,367 - 54,713,781 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	54,704,148 - 54,713,781 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	59,367,054 - 59,375,976 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	58,855,632 - 58,864,556 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	54,362,911 - 54,371,834 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	56,590,822 - 56,600,235 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	56,591,292 - 56,600,232 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	56,335,955 - 56,345,354 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	56,826,157 - 56,835,292 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	56,842,478 - 56,850,339 (+)	NCBI
Celera	10	53,858,610 - 53,867,366 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Ctdnep1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	9,660,288 - 9,666,878 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	9,660,088 - 9,666,878 (+)	NCBI	ChiLan1.0	ChiLan1.0

CTDNEP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	14,836,234 - 14,843,933 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	16,802,238 - 16,809,937 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	7,273,460 - 7,281,158 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	7,260,803 - 7,269,300 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,260,803 - 7,269,003 (-)	Ensembl	panpan1.1		panPan2

CTDNEP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	32,211,185 - 32,216,921 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	32,211,343 - 32,216,698 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	32,349,309 - 32,355,232 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	32,316,636 - 32,322,560 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	32,316,636 - 32,322,345 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	32,281,920 - 32,287,841 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	32,240,947 - 32,246,869 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	32,417,900 - 32,423,821 (-)	NCBI		UU_Cfam_GSD_1.0

Ctdnep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	47,062,943 - 47,069,147 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	536,297 - 543,071 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	537,131 - 543,341 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTDNEP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	6,617,609 - 6,625,261 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	6,617,966 - 6,625,342 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	14,785,432 - 14,793,149 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctdnep1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	9,860,758 - 9,867,293 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	9,857,370 - 9,867,299 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctdnep1
247 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	847
Count of miRNA genes:	429
Interacting mature miRNAs:	496
Transcripts:	ENSMUST00000108593, ENSMUST00000131531, ENSMUST00000138246, ENSMUST00000141623, ENSMUST00000152226
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68190826	101890826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66733420	100733652	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44630038	113058009	Mouse
4141875	Etax9_m	ethanol induced ataxia 9 (mouse)			Not determined			55284985	72209927	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46185167	80185262	Mouse
1301788	Lbw8_m	lupus NZB x NZW 8 (mouse)			Not determined		11	36503287	70509492	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45165873	79978324	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56864027	114157957	Mouse
1301896	Tria1_m	T-cell receptor induced activation 1 (mouse)			Not determined		11	36613565	70613855	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58719266	85066529	Mouse
4141853	Skmw17_m	skeletal muscle weight 17 (mouse)			Not determined		11	37080941	71081064	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45708581	89818733	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66733420	100733652	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64830336	98830473	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	3950000	88890826	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52494385	86494385	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64830336	98830473	Mouse
36049792	Ars5_m	antibody response to SARS-CoV 5, day 7, IgM (mouse)					11	68990826	72490826	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	3950000	94890826	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57754660	91754758	Mouse
10053682	Eae45_m	experimental allergic encephalomyelitis susceptibility 45 (mouse)			Not determined		11	58490555	74754758	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58508030	87695238	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	35890827	84890826	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64830336	98830473	Mouse
11532699	Sluc36b_m	susceptibility to lung cancer 36b (mouse)					11	42256617	76256730	Mouse
11532698	Sluc36a_m	susceptibility to lung cancer 36a (mouse)					11	42256617	76256730	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53390588	87390737	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54126752	83733652	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66733420	100733652	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6880277	89019734	Mouse
35673314	Ari2_m	antibody response to influenza 2, day 10, IgG3 (mouse)					11	68990826	72490826	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12268637	118022724	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36282577	83481356	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21807364	95881231	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66733420	100733652	Mouse
4142316	Ity2b_m	immunity to S. typhimurium 2b (mouse)			Not determined		11	67078191	79813912	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62156005	96156153	Mouse
36049778	Ars6_m	antibody response to SARS-CoV 6, day 15, IgM (mouse)					11	68990826	72490826	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50078191	84078411	Mouse
36049779	Ars7_m	antibody response to SARS-CoV 7, day 29, IgG1 (mouse)					11	68990826	72490826	Mouse
36049790	Ars3_m	antibody response to SARS-CoV 3, day 7, IgG2b (mouse)					11	68990826	72490826	Mouse
36049791	Ars4_m	antibody response to SARS-CoV 4, day 7, IgG3 (mouse)					11	68990826	72490826	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66733420	100733652	Mouse
36049788	Ars1_m	antibody response to SARS-CoV 1, day 7, IgG1 (mouse)					11	68990826	72490826	Mouse
36049789	Ars2_m	antibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)					11	68990826	72490826	Mouse
36049786	Ars10_m	antibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)					11	68990826	72490826	Mouse
10766457	Nwa3_m	New Zealand White autoimmunity 3 (mouse)					11	38016115	72016209	Mouse
36049787	Ars11_m	antibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)					11	68990826	72490826	Mouse
36049784	Ars8_m	antibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)					11	68990826	72490826	Mouse
36049785	Ars9_m	antibody response to SARS-CoV 9, day 29, IgM (mouse)					11	68990826	72490826	Mouse
4142300	Ctrq3_m	C. trachomatis resistance QTL 3 (mouse)			Not determined		11	44630038	76854757	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66733420	100733652	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61686820	88699728	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62590826	109390826	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46319407	80319522	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19124204	96897826	Mouse
1301999	Lmr15_m	leishmaniasis resistance 15 (mouse)			Not determined		11	63319407	81830473	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63319407	94063918	Mouse
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3250000	72690826	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_026017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK012063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK076150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK193484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL596185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC018265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR933541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000108593 ⟹ ENSMUSP00000104234

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	69,871,982 - 69,881,427 (+)	Ensembl
GRCm38.p6 Ensembl	11	69,981,156 - 69,990,601 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000131531

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	69,875,080 - 69,880,374 (+)	Ensembl
GRCm38.p6 Ensembl	11	69,984,254 - 69,989,548 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000138246

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	69,879,897 - 69,880,983 (+)	Ensembl
GRCm38.p6 Ensembl	11	69,989,071 - 69,990,157 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000141623 ⟹ ENSMUSP00000137199

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	69,874,546 - 69,880,385 (+)	Ensembl
GRCm38.p6 Ensembl	11	69,983,720 - 69,989,559 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000152226

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	69,879,917 - 69,881,228 (+)	Ensembl
GRCm38.p6 Ensembl	11	69,989,091 - 69,990,402 (+)	Ensembl

RefSeq Acc Id:

NM_026017 ⟹ NP_080293

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,871,994 - 69,881,427 (+)	NCBI
GRCm38	11	69,981,168 - 69,990,601 (+)	ENTREZGENE
MGSCv37	11	69,794,670 - 69,804,103 (+)	RGD
Celera	11	77,529,199 - 77,538,411 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

CTTCCCTCCTGGTCTCAGAGGACCCTGTCCTAGCCCGACCTGTTTCGGCCTGCAGCCCACGCGA
AGTCGTCGGTGCCACTTCCCGCTCATGTGGGCCCCCGCGGGCTGCCCACGCCAGTCCCCCAGTT
CCCGGTTCCGCTGGGCTTTCCCTTCGCTGGGGGTGGCTTTCTAAGCCACCCACTCCGTGCTCAT
CTCTGCAGCCTCTCCTGCCGCTCGGGGCCCCCGTTCCCCCTCCCTGCGGCGGGGGGCTGCCCCC
GGGGGGCTGGCGGAGCTGGGCCGCGGGGGCCCCGGGGCCGGCGGTGCCGGGGTCATCGGGATGA
TGCGGACGCAGTGTCTGCTGGGGCTGCGCACGTTCGTGGCCTTCGCCGCCAAGCTCTGGAGCTT
CTTTATTTACCTTTTGCGGAGGCAGATCCGCACGGTAATTCAGTATCAGACTGTTCGATATGAT
ATCCTGCCCTTATCTCCTTTGTCCCGGAATCGCCTAGCCCAGGTGAAGAGGAAGATCCTGGTGC
TGGATCTGGACGAAACCCTGATTCACTCTCACCACGATGGGGTGCTGAGGCCTACAGTGAGACC
TGGGACACCTCCCGACTTCATCCTCAAGGTGGTAATAGACAAACACCCAGTCCGGTTTTTTGTA
CATAAGAGGCCCCATGTGGATTTCTTCTTAGAAGTGGTAAGCCAGTGGTATGAGCTTGTGGTGT
TCACAGCAAGCATGGAAATTTATGGCTCTGCTGTGGCAGATAAACTGGACAACAGCAGAAGCAT
TCTTAAGAGGAGATACTACAGACAGCACTGCACTTTGGAGTTGGGCAGCTACATCAAAGACCTC
TCCGTGGTCCACAGCGACCTGTCCAGCATCGTGATCCTGGACAACTCCCCCGGGGCTTACAGGA
GCCACCCAGACAATGCCATCCCCATCAAATCCTGGTTCAGTGACCCCAGTGACACAGCCCTTCT
CAACCTTCTCCCAATGCTGGATGCCCTCAGGTTCACTGCTGATGTCCGATCGGTGCTGAGCCGA
AACCTTCACCAACATAGGCTCTGGTGACAGCTGCTCCCCCTCCACCTGAGTTGGGGTGGAGGGG
AAAGGGAGGGAGAGTTCTTGGGACACCGTCTGTTGCCCTGTCCAATGTGAGGACTGCCTGGGCA
GAGTCTGCCCCTCCCACCCCTCTGCCCTGGGAGCCCTACACTCCACTTATGGAGTCTGGATGGA
CACATGGGCCAGACCGTGAAGCAGCCTCACTCTGGGTTCACACTCCGTGGAAATGCCAGACTGG
GACAGGCGAAGGCCTAGAGGAGCCGAAACAGTCTGGTGAAGAGGCAGGACTGGCCAGAGTGACA
GACATATCCCAGAGGCTCAAAAGAAGCCAATTCAACTTTGTTGTGATTTGATTTTTTTAAAAAC
TCTTATACAAAACTGATCTAATTCTTCACTCCTGCTCCAAGGGCTGGGCTGTGGGTGGGGACTG
GGGTTTCGGGCCACTGGATCCTCCTCAGACTTGTCCCCCCCTTACTTTTCCTCATTTTTTTTCT
TTCCCCAATCCCCCATACCTGTAATCGGCTCCTTTCTTCTTTCCTCTTTTAAACCATGCATTAT
AACTTTGAAACCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_080293	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH18265	(Get FASTA)	NCBI Sequence Viewer
	BAE37845	(Get FASTA)	NCBI Sequence Viewer
	EDL12509	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000104234
	ENSMUSP00000104234.2
	ENSMUSP00000137199.2
GenBank Protein	Q3TP92	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_080293 ⟸ NM_026017

- UniProtKB:

Q5NCW4 (UniProtKB/Swiss-Prot), Q8VEL4 (UniProtKB/Swiss-Prot), Q3TP92 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MMRTQCLLGLRTFVAFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPLSRNRLAQVKRKIL
VLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELV
VFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAY
RSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW

hide sequence

Ensembl Acc Id:

ENSMUSP00000104234 ⟸ ENSMUST00000108593

Ensembl Acc Id:

ENSMUSP00000137199 ⟸ ENSMUST00000141623

Protein Domains

FCP1 homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3TP92-F1-model_v2	AlphaFold	Q3TP92	1-244	view protein structure

Promoters

RGD ID:

6820763

Promoter ID:

MM_KWN:8160

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000108593, OTTMUST00000013548, OTTMUST00000013549, OTTMUST00000038441, OTTMUST00000038442, OTTMUST00000038444, OTTMUST00000038445, UC007JTD.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	69,793,791 - 69,794,377 (+)	MPROMDB

RGD ID:

8675270

Promoter ID:

EPDNEW_M15665

Type:

initiation region

Name:

Ctdnep1_1

Description:

Mus musculus CTD nuclear envelope phosphatase 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M15666

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	69,981,070 - 69,981,130	EPDNEW

RGD ID:

8675272

Promoter ID:

EPDNEW_M15666

Type:

initiation region

Name:

Ctdnep1_2

Description:

Mus musculus CTD nuclear envelope phosphatase 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M15665

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	69,981,338 - 69,981,398	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1914431	AgrOrtholog
Ensembl Genes	ENSMUSG00000018559	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000108593	ENTREZGENE
	ENSMUST00000108593.8	UniProtKB/Swiss-Prot
	ENSMUST00000141623.8	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1000	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Dullard_phosphatase	UniProtKB/Swiss-Prot
	FCP1_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HAD_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TIM50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:67181	UniProtKB/Swiss-Prot
MGD	MGI:1914431	ENTREZGENE
NCBI Gene	67181	ENTREZGENE
PANTHER	CTD NUCLEAR ENVELOPE PHOSPHATASE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DULLARD PROTEIN PHOSPHATASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	NIF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ctdnep1	PhenoGen
PROSITE	FCP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CPDc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56784	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	CNEP1_MOUSE	UniProtKB/Swiss-Prot
	J3QPC9_MOUSE	UniProtKB/TrEMBL
	Q3TP92	ENTREZGENE
	Q5NCW4	ENTREZGENE
	Q8VEL4	ENTREZGENE
UniProt Secondary	Q5NCW4	UniProtKB/Swiss-Prot
	Q8VEL4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-27	Ctdnep1	CTD nuclear envelope phosphatase 1	Dullard	Dullard homolog (Xenopus laevis)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar

Mammalian Phenotype