TNFRSF10A-AS1 (TNFRSF10A antisense RNA 1) - Rat Genome Database

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Pathways
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Gene: TNFRSF10A-AS1 (TNFRSF10A antisense RNA 1) Homo sapiens
Analyze
Symbol: TNFRSF10A-AS1
Name: TNFRSF10A antisense RNA 1
RGD ID: 13208294
HGNC Page HGNC:53164
Description: INTERACTS WITH dimethylselenide; hydroxyl; ozone
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl823,189,279 - 23,190,675 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map8p21.3NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16712791   PMID:27727196   PMID:35637954   PMID:35721888  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:93
Interacting mature miRNAs:95
Transcripts:ENST00000518308
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 77 1 11 7 173 8 6 4 39 62 80 4
Low 1833 1520 1265 485 1166 324 3267 1037 1065 281 809 1395 164 1188 1783 2
Below cutoff 456 1260 366 92 367 90 855 971 1865 68 343 51 2 15 822

Sequence

Nucleotide Sequences
GenBank Nucleotide AC100861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB128559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000518308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl823,189,279 - 23,190,675 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TNFRSF10A-AS1 COSMIC
Ensembl Genes ENSG00000253930 Ensembl
GTEx ENSG00000253930 GTEx
HGNC ID HGNC:53164 ENTREZGENE
Human Proteome Map TNFRSF10A-AS1 Human Proteome Map
NCBI Gene TNFRSF10A-AS1 ENTREZGENE