Slc45a4 (solute carrier family 45, member 4) - Rat Genome Database

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Gene: Slc45a4 (solute carrier family 45, member 4) Mus musculus
Analyze
Symbol: Slc45a4
Name: solute carrier family 45, member 4
RGD ID: 1320603
MGI Page MGI
Description: Enables sucrose:proton symporter activity. Acts upstream of or within sucrose transport. Predicted to be active in membrane. Is expressed in central nervous system and retina. Orthologous to human SLC45A4 (solute carrier family 45 member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9330175B01Rik; AW552276; solute carrier family 45 member 4
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18711   Gm5408  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391573,449,267 - 73,517,606 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1573,449,273 - 73,517,611 (-)EnsemblGRCm39 Ensembl
GRCm381573,577,418 - 73,645,757 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1573,577,424 - 73,645,762 (-)EnsemblGRCm38mm10GRCm38
MGSCv371573,410,720 - 73,455,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361573,408,813 - 73,452,000 (-)NCBIMGSCv36mm8
Celera1575,084,641 - 75,130,643 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15368895  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18799693   PMID:21873635   PMID:22967998   PMID:24200680   PMID:25164149   PMID:27899360   PMID:32075758  


Genomics

Comparative Map Data
Slc45a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391573,449,267 - 73,517,606 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1573,449,273 - 73,517,611 (-)EnsemblGRCm39 Ensembl
GRCm381573,577,418 - 73,645,757 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1573,577,424 - 73,645,762 (-)EnsemblGRCm38mm10GRCm38
MGSCv371573,410,720 - 73,455,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361573,408,813 - 73,452,000 (-)NCBIMGSCv36mm8
Celera1575,084,641 - 75,130,643 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.02NCBI
SLC45A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388141,207,174 - 141,308,288 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8141,207,166 - 141,308,305 (-)EnsemblGRCh38hg38GRCh38
GRCh378142,217,273 - 142,318,387 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368142,290,052 - 142,307,855 (-)NCBINCBI36Build 36hg18NCBI36
Celera8138,389,005 - 138,406,794 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8137,532,408 - 137,550,219 (-)NCBIHuRef
CHM1_18142,261,599 - 142,279,408 (-)NCBICHM1_1
T2T-CHM13v2.08142,328,543 - 142,429,759 (-)NCBIT2T-CHM13v2.0
Slc45a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87107,370,826 - 107,459,163 (-)NCBIGRCr8
mRatBN7.27105,478,886 - 105,550,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7105,481,792 - 105,550,170 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07114,817,817 - 114,888,998 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7114,821,971 - 114,848,414 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07114,741,753 - 114,812,934 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47111,283,726 - 111,311,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17111,317,959 - 111,345,614 (-)NCBI
Celera7101,886,429 - 101,957,293 (-)NCBICelera
Cytogenetic Map7q34NCBI
SLC45A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27158,603,970 - 158,705,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18134,112,108 - 134,236,388 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08137,882,787 - 137,984,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18140,966,259 - 141,064,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8140,969,934 - 141,012,735 (-)Ensemblpanpan1.1panPan2
SLC45A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11335,704,780 - 35,787,037 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1335,707,692 - 35,748,183 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1335,568,115 - 35,646,057 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01336,094,384 - 36,172,646 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1336,093,124 - 36,130,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11335,814,440 - 35,892,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01335,904,198 - 35,982,562 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01336,324,387 - 36,402,945 (-)NCBIUU_Cfam_GSD_1.0
Slc45a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053032,743,881 - 2,790,191 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647010,178,344 - 10,216,304 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647010,178,399 - 10,216,290 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC45A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl42,472,259 - 2,518,885 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.142,471,269 - 2,523,041 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.241,995,224 - 2,034,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC45A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18135,449,973 - 135,544,275 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8135,450,220 - 135,492,234 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660394,585,037 - 4,684,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc45a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473515,067,526 - 15,145,932 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473515,067,474 - 15,150,553 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc45a4
2714 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3933
Count of miRNA genes:853
Interacting mature miRNAs:1149
Transcripts:ENSMUST00000054266, ENSMUST00000076224, ENSMUST00000130765, ENSMUST00000132607, ENSMUST00000144936, ENSMUST00000150409, ENSMUST00000151288, ENSMUST00000152558
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
25671381Hrsq3_mhost response to SARS QTL 3, eosinophilia (mouse)157214453975844833Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
1300844Emo2_memotionality 2 (mouse)Not determined157237245976794493Mouse

Markers in Region
AW552276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381573,580,732 - 73,580,853UniSTSGRCm38
MGSCv371573,411,162 - 73,411,283UniSTSGRCm37
Celera1575,085,083 - 75,085,204UniSTS
Cytogenetic Map15D3UniSTS
Whitehead/MRC_RH15611.51UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY200093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY467725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000054266   ⟹   ENSMUSP00000054651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,452,142 - 73,496,593 (-)Ensembl
GRCm38.p6 Ensembl1573,580,293 - 73,624,744 (-)Ensembl
Ensembl Acc Id: ENSMUST00000076224   ⟹   ENSMUSP00000075577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,452,139 - 73,489,173 (-)Ensembl
GRCm38.p6 Ensembl1573,580,290 - 73,617,324 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130765   ⟹   ENSMUSP00000115418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,477,442 - 73,517,611 (-)Ensembl
GRCm38.p6 Ensembl1573,605,593 - 73,645,762 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132607   ⟹   ENSMUSP00000115827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,453,406 - 73,468,378 (-)Ensembl
GRCm38.p6 Ensembl1573,581,557 - 73,596,529 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144936   ⟹   ENSMUSP00000122825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,452,139 - 73,477,316 (-)Ensembl
GRCm38.p6 Ensembl1573,580,290 - 73,605,467 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,477,797 - 73,517,194 (-)Ensembl
GRCm38.p6 Ensembl1573,605,948 - 73,645,345 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151288   ⟹   ENSMUSP00000121775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,449,273 - 73,496,593 (-)Ensembl
GRCm38.p6 Ensembl1573,577,424 - 73,624,744 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1573,458,743 - 73,460,811 (-)Ensembl
GRCm38.p6 Ensembl1573,586,894 - 73,588,962 (-)Ensembl
RefSeq Acc Id: NM_001033219   ⟹   NP_001028391
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,449,273 - 73,496,593 (-)NCBI
GRCm381573,577,424 - 73,624,744 (-)NCBI
MGSCv371573,410,720 - 73,455,174 (-)RGD
Celera1575,084,641 - 75,130,643 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168255   ⟹   NP_001161727
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,449,273 - 73,468,375 (-)NCBI
GRCm381573,577,424 - 73,596,526 (-)NCBI
MGSCv371573,410,720 - 73,455,174 (-)RGD
Celera1575,084,641 - 75,130,643 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357747   ⟹   NP_001344676
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,449,273 - 73,489,173 (-)NCBI
GRCm381573,577,424 - 73,617,324 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011245401   ⟹   XP_011243703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,449,267 - 73,517,606 (-)NCBI
GRCm381573,577,418 - 73,645,757 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316363   ⟹   XP_017171852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,449,267 - 73,517,316 (-)NCBI
GRCm381573,577,418 - 73,645,469 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316364   ⟹   XP_017171853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,449,267 - 73,506,100 (-)NCBI
GRCm381573,577,418 - 73,634,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248266   ⟹   XP_030104126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391573,449,267 - 73,515,929 (-)NCBI
GRCm381573,577,418 - 73,644,087 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001028391   ⟸   NM_001033219
- Peptide Label: isoform 1
- UniProtKB: Q0P5V9 (UniProtKB/Swiss-Prot),   Q69ZR4 (UniProtKB/Swiss-Prot),   Q3V0B8 (UniProtKB/Swiss-Prot),   Q3TCG5 (UniProtKB/Swiss-Prot),   Q6PDG3 (UniProtKB/Swiss-Prot),   F7BEQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001161727   ⟸   NM_001168255
- Peptide Label: isoform 2
- UniProtKB: F7BEQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011243703   ⟸   XM_011245401
- Peptide Label: isoform X1
- UniProtKB: Q0P5V9 (UniProtKB/Swiss-Prot),   Q69ZR4 (UniProtKB/Swiss-Prot),   Q3V0B8 (UniProtKB/Swiss-Prot),   Q3TCG5 (UniProtKB/Swiss-Prot),   Q6PDG3 (UniProtKB/Swiss-Prot),   F7BEQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171852   ⟸   XM_017316363
- Peptide Label: isoform X1
- UniProtKB: Q0P5V9 (UniProtKB/Swiss-Prot),   Q69ZR4 (UniProtKB/Swiss-Prot),   Q3V0B8 (UniProtKB/Swiss-Prot),   Q3TCG5 (UniProtKB/Swiss-Prot),   Q6PDG3 (UniProtKB/Swiss-Prot),   F7BEQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171853   ⟸   XM_017316364
- Peptide Label: isoform X1
- UniProtKB: Q0P5V9 (UniProtKB/Swiss-Prot),   Q69ZR4 (UniProtKB/Swiss-Prot),   Q3V0B8 (UniProtKB/Swiss-Prot),   Q3TCG5 (UniProtKB/Swiss-Prot),   Q6PDG3 (UniProtKB/Swiss-Prot),   F7BEQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104126   ⟸   XM_030248266
- Peptide Label: isoform X1
- UniProtKB: Q69ZR4 (UniProtKB/Swiss-Prot),   Q3V0B8 (UniProtKB/Swiss-Prot),   Q3TCG5 (UniProtKB/Swiss-Prot),   Q0P5V9 (UniProtKB/Swiss-Prot),   Q6PDG3 (UniProtKB/Swiss-Prot),   F7BEQ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344676   ⟸   NM_001357747
- Peptide Label: isoform 1
- UniProtKB: Q69ZR4 (UniProtKB/Swiss-Prot),   Q3V0B8 (UniProtKB/Swiss-Prot),   Q3TCG5 (UniProtKB/Swiss-Prot),   Q0P5V9 (UniProtKB/Swiss-Prot),   Q6PDG3 (UniProtKB/Swiss-Prot),   F7BEQ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000122825   ⟸   ENSMUST00000144936
Ensembl Acc Id: ENSMUSP00000115418   ⟸   ENSMUST00000130765
Ensembl Acc Id: ENSMUSP00000115827   ⟸   ENSMUST00000132607
Ensembl Acc Id: ENSMUSP00000054651   ⟸   ENSMUST00000054266
Ensembl Acc Id: ENSMUSP00000121775   ⟸   ENSMUST00000151288
Ensembl Acc Id: ENSMUSP00000075577   ⟸   ENSMUST00000076224

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0P5V9-F1-model_v2 AlphaFold Q0P5V9 1-785 view protein structure

Promoters
RGD ID:6826499
Promoter ID:MM_KWN:18717
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000081686
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361573,419,766 - 73,420,266 (-)MPROMDB
RGD ID:6826491
Promoter ID:MM_KWN:18718
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000081682
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361573,426,776 - 73,427,857 (-)MPROMDB
RGD ID:8683922
Promoter ID:EPDNEW_M19992
Type:single initiation site
Name:Slc45a4_1
Description:Mus musculus solute carrier family 45, member 4 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381573,596,616 - 73,596,676EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2146236 AgrOrtholog
Ensembl Genes ENSMUSG00000036649
  ENSMUSG00000079020 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000054266.13 UniProtKB/Swiss-Prot
  ENSMUST00000076224 ENTREZGENE
  ENSMUST00000076224.12 UniProtKB/Swiss-Prot
  ENSMUST00000130765.2 UniProtKB/TrEMBL
  ENSMUST00000132607 ENTREZGENE
  ENSMUST00000132607.2 UniProtKB/Swiss-Prot
  ENSMUST00000144936.8 UniProtKB/TrEMBL
  ENSMUST00000151288 ENTREZGENE
  ENSMUST00000151288.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MFS UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:106068 UniProtKB/Swiss-Prot
MGD MGI:2146236 ENTREZGENE
NCBI Gene 106068 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 45 MEMBER 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUGAR TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/Swiss-Prot
PhenoGen Slc45a4 PhenoGen
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z0C0_MOUSE UniProtKB/TrEMBL
  F7BEQ1 ENTREZGENE, UniProtKB/TrEMBL
  Q0P5V9 ENTREZGENE
  Q3TCG5 ENTREZGENE
  Q3V0B8 ENTREZGENE
  Q69ZR4 ENTREZGENE
  Q6PDG3 ENTREZGENE
  Q8CBY6_MOUSE UniProtKB/TrEMBL
  S45A4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TCG5 UniProtKB/Swiss-Prot
  Q3V0B8 UniProtKB/Swiss-Prot
  Q69ZR4 UniProtKB/Swiss-Prot
  Q6PDG3 UniProtKB/Swiss-Prot