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Gene: HOXD1 (homeobox D1) Homo sapiens
Symbol: HOXD1
Name: homeobox D1
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in several processes, including embryonic skeletal system development; regulation of transcription by RNA polymerase II; and sensory perception of pain. Localizes to the nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: homeo box 4G; homeo box D1; homeobox protein Hox-D1; homeobox protein Hox-GG; Hox-4.7; HOX4; HOX4G
Mus musculus (house mouse) : Hoxd1 (homeobox D1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Hoxd1 (homeo box D1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxd1 (homeobox D1)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXD1 (homeobox D1)
Canis lupus familiaris (dog) : HOXD1 (homeobox D1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxd1 (homeobox D1)
Sus scrofa (pig) : HOXD1 (homeobox D1)
Chlorocebus sabaeus (green monkey) : HOXD1 (homeobox D1)
Heterocephalus glaber (naked mole-rat) : Hoxd1 (homeobox D1)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38 Ensembl2176,188,668 - 176,190,907 (+)Ensembl
GRCh382176,188,668 - 176,190,907 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372177,053,307 - 177,055,635 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362176,761,553 - 176,763,881 (+)NCBINCBI36hg18NCBI36
Build 342176,878,813 - 176,881,142NCBI
Celera2170,662,486 - 170,664,814 (+)NCBI
Cytogenetic Map2q31.1NCBI
HuRef2168,930,260 - 168,932,588 (+)NCBIHuRef
CHM1_12177,059,181 - 177,061,509 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences
Clinical Variants

Additional Information

External Database Links
More on HOXD1
Alliance Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1319375
Created: 2005-01-12
Species: Homo sapiens
Last Modified: 2019-12-25
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.