Tectb (tectorin beta) - Rat Genome Database

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Gene: Tectb (tectorin beta) Mus musculus
Analyze
Symbol: Tectb
Name: tectorin beta
RGD ID: 1314107
MGI Page MGI
Description: An extracellular matrix structural constituent. Predicted to act upstream of or within sensory perception of sound. Located in extracellular matrix. Is expressed in inner ear. Orthologous to human TECTB (tectorin beta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: [b]-tectorin; beta-tectorin; Tctn; Tctnb
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,169,158 - 55,184,745 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,169,165 - 55,184,745 (+)EnsemblGRCm39 Ensembl
GRCm381955,180,726 - 55,196,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,180,733 - 55,196,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,255,375 - 55,270,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,234,135 - 55,249,563 (+)NCBIMGSCv36mm8
Celera1957,371,980 - 57,387,427 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9079715   PMID:9799617   PMID:10023815   PMID:10349636   PMID:10602987   PMID:11042159   PMID:11076861   PMID:11850622   PMID:11933161   PMID:11972037   PMID:12477932   PMID:15177554  
PMID:15543141   PMID:16141072   PMID:16141073   PMID:16141228   PMID:16682971   PMID:16919269   PMID:17220887   PMID:20554841   PMID:20803598   PMID:20856818   PMID:20981024   PMID:21677750  
PMID:21873635   PMID:22544735   PMID:22808246   PMID:24391519   PMID:24655516   PMID:24893171   PMID:25080593   PMID:26806019   PMID:28266911   PMID:28935705   PMID:31896743   PMID:32492250  
PMID:32665247   PMID:35451126   PMID:37279265  


Genomics

Comparative Map Data
Tectb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,169,158 - 55,184,745 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,169,165 - 55,184,745 (+)EnsemblGRCm39 Ensembl
GRCm381955,180,726 - 55,196,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,180,733 - 55,196,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,255,375 - 55,270,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,234,135 - 55,249,563 (+)NCBIMGSCv36mm8
Celera1957,371,980 - 57,387,427 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.13NCBI
TECTB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,283,400 - 112,305,038 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,283,400 - 112,305,038 (+)EnsemblGRCh38hg38GRCh38
GRCh3710114,043,158 - 114,064,796 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610114,033,483 - 114,053,060 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410114,033,482 - 114,053,060NCBI
Celera10107,771,025 - 107,790,599 (+)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,671,685 - 107,693,068 (+)NCBIHuRef
CHM1_110114,325,466 - 114,346,829 (+)NCBICHM1_1
T2T-CHM13v2.010113,174,401 - 113,196,039 (+)NCBIT2T-CHM13v2.0
Tectb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,226,963 - 264,242,010 (+)NCBIGRCr8
mRatBN7.21254,221,621 - 254,236,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,221,621 - 254,236,669 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,426,711 - 262,441,717 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,132,790 - 269,147,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,780,477 - 261,795,483 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01275,957,698 - 275,976,572 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1275,957,698 - 275,976,572 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,358,674 - 283,377,599 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,482,994 - 261,498,415 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,694,167 - 261,707,830 (+)NCBI
Celera1249,928,360 - 249,943,433 (+)NCBICelera
Cytogenetic Map1q55NCBI
Tectb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,413,841 - 17,425,192 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,413,841 - 17,425,192 (+)NCBIChiLan1.0ChiLan1.0
TECTB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,159,821 - 124,181,870 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,165,157 - 124,187,206 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010108,875,621 - 108,897,402 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,315,820 - 112,336,808 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,315,820 - 112,336,800 (+)Ensemblpanpan1.1panPan2
TECTB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,359,019 - 23,378,150 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,359,162 - 23,376,760 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,510,832 - 23,529,940 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02823,891,255 - 23,910,380 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2823,891,371 - 23,908,987 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,448,582 - 23,467,680 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,459,707 - 23,478,835 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,655,112 - 23,674,215 (+)NCBIUU_Cfam_GSD_1.0
Tectb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,678,008 - 22,709,315 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364862,852,016 - 2,883,265 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364862,852,015 - 2,883,265 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TECTB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,691,421 - 122,710,351 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,690,796 - 122,711,124 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214133,604,709 - 133,624,167 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TECTB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,152,311 - 105,196,040 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,175,643 - 105,195,420 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,378,589 - 66,399,862 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tectb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473734,146,587 - 34,157,957 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473734,144,175 - 34,158,417 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tectb
568 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1038
Count of miRNA genes:586
Interacting mature miRNAs:675
Transcripts:ENSMUST00000025936, ENSMUST00000120936, ENSMUST00000123763, ENSMUST00000124545, ENSMUST00000148123, ENSMUST00000154886
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
11667075Led3_mlate embryonic death 3 (mouse)195108837859123872Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse

Markers in Region
X99806  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,195,823 - 55,195,947UniSTSGRCm38
MGSCv371955,270,313 - 55,270,437UniSTSGRCm37
Celera1957,386,937 - 57,387,061UniSTS
Cytogenetic Map19D2UniSTS
cM Map1952.0UniSTS
Whitehead/MRC_RH19579.81UniSTS
RH101913  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,181,740 - 55,181,878UniSTSGRCm38
MGSCv371955,256,230 - 55,256,368UniSTSGRCm37
Celera1957,372,835 - 57,372,973UniSTS
Cytogenetic Map19D2UniSTS
cM Map1952.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000025936   ⟹   ENSMUSP00000025936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,169,317 - 55,184,745 (+)Ensembl
GRCm38.p6 Ensembl1955,180,885 - 55,196,313 (+)Ensembl
Ensembl Acc Id: ENSMUST00000120936   ⟹   ENSMUSP00000113805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,169,168 - 55,183,301 (+)Ensembl
GRCm38.p6 Ensembl1955,180,736 - 55,194,869 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,178,062 - 55,178,756 (+)Ensembl
GRCm38.p6 Ensembl1955,189,630 - 55,190,324 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124545   ⟹   ENSMUSP00000117645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,178,010 - 55,183,126 (+)Ensembl
GRCm38.p6 Ensembl1955,189,578 - 55,194,694 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,180,465 - 55,184,736 (+)Ensembl
GRCm38.p6 Ensembl1955,192,033 - 55,196,304 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154886   ⟹   ENSMUSP00000121767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,169,165 - 55,178,097 (+)Ensembl
GRCm38.p6 Ensembl1955,180,733 - 55,189,665 (+)Ensembl
RefSeq Acc Id: NM_009348   ⟹   NP_033374
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,169,158 - 55,184,745 (+)NCBI
GRCm381955,180,726 - 55,196,313 (+)NCBI
MGSCv371955,255,375 - 55,270,803 (+)RGD
Celera1957,371,980 - 57,387,427 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526902   ⟹   XP_006526965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,169,165 - 55,181,438 (+)NCBI
GRCm381955,180,733 - 55,193,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526903   ⟹   XP_006526966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,169,165 - 55,183,856 (+)NCBI
GRCm381955,180,733 - 55,195,424 (+)NCBI
Sequence:
RefSeq Acc Id: NP_033374   ⟸   NM_009348
- Peptide Label: precursor
- UniProtKB: O08524 (UniProtKB/Swiss-Prot),   Q1HL20 (UniProtKB/TrEMBL),   D3Z3Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526966   ⟸   XM_006526903
- Peptide Label: isoform X2
- UniProtKB: O08524 (UniProtKB/Swiss-Prot),   Q1HL20 (UniProtKB/TrEMBL),   D3Z3Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526965   ⟸   XM_006526902
- Peptide Label: isoform X1
- UniProtKB: D3Z3Y6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000117645   ⟸   ENSMUST00000124545
Ensembl Acc Id: ENSMUSP00000025936   ⟸   ENSMUST00000025936
Ensembl Acc Id: ENSMUSP00000113805   ⟸   ENSMUST00000120936
Ensembl Acc Id: ENSMUSP00000121767   ⟸   ENSMUST00000154886
Protein Domains
ZP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08524-F1-model_v2 AlphaFold O08524 1-329 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109574 AgrOrtholog
Ensembl Genes ENSMUSG00000024979 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025936 ENTREZGENE
  ENSMUST00000025936.12 UniProtKB/Swiss-Prot
  ENSMUST00000120936 ENTREZGENE
  ENSMUST00000120936.8 UniProtKB/TrEMBL
  ENSMUST00000124545.2 UniProtKB/TrEMBL
  ENSMUST00000154886.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.4100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ZP-C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_chr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_dom_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21684 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109574 ENTREZGENE
NCBI Gene 21684 ENTREZGENE
PANTHER BETA-TECTORIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENDOGLIN/TGF-BETA RECEPTOR TYPE III UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Zona_pellucida UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tectb PhenoGen
PRINTS ZPELLUCIDA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ZP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00241 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z273_MOUSE UniProtKB/TrEMBL
  D3Z3Y6 ENTREZGENE, UniProtKB/TrEMBL
  F6Z818_MOUSE UniProtKB/TrEMBL
  O08524 ENTREZGENE
  Q1HL20 ENTREZGENE, UniProtKB/TrEMBL
  TECTB_MOUSE UniProtKB/Swiss-Prot