Triml1 (tripartite motif family-like 1) - Rat Genome Database

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Gene: Triml1 (tripartite motif family-like 1) Mus musculus
Analyze
Symbol: Triml1
Name: tripartite motif family-like 1
RGD ID: 1313306
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in innate immune response and regulation of gene expression. Predicted to be active in cytoplasm. Is expressed in early conceptus and testis. Orthologous to human TRIML1 (tripartite motif family like 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933403D14; BC050188; probable E3 ubiquitin-protein ligase TRIML1; RING-type E3 ubiquitin transferase TRIML1; tripartite motif family-like protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39843,582,843 - 43,633,531 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl843,582,844 - 43,594,523 (-)EnsemblGRCm39 Ensembl
GRCm38843,129,806 - 43,180,494 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl843,129,807 - 43,141,486 (-)EnsemblGRCm38mm10GRCm38
MGSCv37844,215,161 - 44,226,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36844,628,624 - 44,640,303 (-)NCBIMGSCv36mm8
Celera845,810,994 - 45,822,269 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14691545   PMID:16141072   PMID:16141073   PMID:19156909   PMID:21267068  
PMID:21873635  


Genomics

Comparative Map Data
Triml1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39843,582,843 - 43,633,531 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl843,582,844 - 43,594,523 (-)EnsemblGRCm39 Ensembl
GRCm38843,129,806 - 43,180,494 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl843,129,807 - 43,141,486 (-)EnsemblGRCm38mm10GRCm38
MGSCv37844,215,161 - 44,226,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36844,628,624 - 44,640,303 (-)NCBIMGSCv36mm8
Celera845,810,994 - 45,822,269 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
TRIML1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384188,137,229 - 188,150,767 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4188,139,441 - 188,147,743 (+)EnsemblGRCh38hg38GRCh38
GRCh374189,060,595 - 189,068,897 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364189,297,592 - 189,305,643 (+)NCBINCBI36Build 36hg18NCBI36
Celera4186,370,123 - 186,378,284 (+)NCBICelera
Cytogenetic Map4q35.2NCBI
HuRef4184,797,144 - 184,805,172 (+)NCBIHuRef
CHM1_14189,037,036 - 189,045,104 (+)NCBICHM1_1
T2T-CHM13v2.04191,484,912 - 191,498,442 (+)NCBIT2T-CHM13v2.0
Triml1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81655,727,383 - 55,737,770 (+)NCBIGRCr8
mRatBN7.21648,994,968 - 49,005,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1648,997,252 - 49,005,417 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01652,169,426 - 52,177,548 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1652,169,450 - 52,177,586 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01651,895,696 - 51,903,792 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41652,328,994 - 52,336,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11652,329,068 - 52,336,721 (+)NCBI
Celera1646,968,104 - 46,976,226 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
Triml1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540321,041,982 - 21,050,181 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540321,043,233 - 21,050,261 (-)NCBIChiLan1.0ChiLan1.0
TRIML1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23185,859,683 - 185,870,381 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14186,214,255 - 186,224,957 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04180,294,211 - 180,302,527 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14192,483,186 - 192,491,414 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4192,483,189 - 192,491,414 (+)Ensemblpanpan1.1panPan2
TRIML1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11642,954,353 - 42,984,128 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1642,954,012 - 42,980,309 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1643,442,909 - 43,472,680 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01645,174,211 - 45,204,062 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1645,173,861 - 45,180,528 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11643,134,589 - 43,142,611 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01643,714,818 - 43,744,586 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01643,844,318 - 43,874,160 (-)NCBIUU_Cfam_GSD_1.0
Triml1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494336,476,389 - 36,483,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365541,627,624 - 1,633,479 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365541,627,624 - 1,633,479 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIML1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl177,283,709 - 7,292,681 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1177,284,392 - 7,290,639 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIML1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17133,998,623 - 134,009,606 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7134,001,323 - 134,009,241 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037114,423,366 - 114,431,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Triml1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476919,097,452 - 19,102,862 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476919,095,899 - 19,103,190 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Triml1
1409 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:114
Interacting mature miRNAs:118
Transcripts:ENSMUST00000059692
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301139Lmr10_mleishmaniasis resistance 10 (mouse)Not determined83532109757797633Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
11049577Lmr10b_mleishmaniasis resistance 10b (mouse)83532109757797633Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
11049578Lmr10c_mleishmaniasis resistance 10c (mouse)83532109757797633Mouse
11041902Lmr10a_mleishmaniasis resistance 10a (mouse)83532109757797633Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
10043990Hbnr12_mHeligmosomoides bakeri nematode resistance 12 (mouse)Not determined83327701651290537Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82658332260583322Mouse
1301196Mnif1_mmacronutrient intake (mouse)Not determined83510993045305872Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
13524525Bodwtq7_mbody wweight QTL 7 (mouse)82824955647027681Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83429039768290537Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse

Markers in Region
UniSTS:235879  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38843,130,052 - 43,130,258UniSTSGRCm38
MGSCv37844,215,406 - 44,215,612UniSTSGRCm37
Celera845,811,239 - 45,811,445UniSTS
Cytogenetic Map8A4UniSTS
UniSTS:235880  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38843,134,399 - 43,134,649UniSTSGRCm38
MGSCv37844,219,753 - 44,220,003UniSTSGRCm37
Celera845,815,607 - 45,815,857UniSTS
Cytogenetic Map8A4UniSTS
Triml1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8A4UniSTS
cM Map8 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_177742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC142104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY512960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000059692   ⟹   ENSMUSP00000050267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl843,582,844 - 43,594,523 (-)Ensembl
GRCm38.p6 Ensembl843,129,807 - 43,141,486 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl843,583,070 - 43,592,077 (-)Ensembl
GRCm38.p6 Ensembl843,130,033 - 43,139,040 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl843,583,460 - 43,589,630 (-)Ensembl
GRCm38.p6 Ensembl843,130,423 - 43,136,593 (-)Ensembl
RefSeq Acc Id: NM_177742   ⟹   NP_808410
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,844 - 43,594,523 (-)NCBI
GRCm38843,129,807 - 43,141,486 (-)NCBI
MGSCv37844,215,161 - 44,226,840 (-)RGD
Celera845,810,994 - 45,822,269 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509422   ⟹   XP_006509485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,902 - 43,595,705 (-)NCBI
GRCm38843,129,865 - 43,142,668 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242219   ⟹   XP_011240521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,595,707 (-)NCBI
GRCm38843,129,806 - 43,142,670 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242222   ⟹   XP_011240524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,902 - 43,633,428 (-)NCBI
GRCm38843,129,865 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312800   ⟹   XP_017168289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,595,707 (-)NCBI
GRCm38843,129,806 - 43,142,670 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312801   ⟹   XP_017168290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,595,707 (-)NCBI
GRCm38843,129,806 - 43,142,670 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312802   ⟹   XP_017168291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,595,706 (-)NCBI
GRCm38843,129,806 - 43,142,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312803   ⟹   XP_017168292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,595,708 (-)NCBI
GRCm38843,129,806 - 43,142,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312804   ⟹   XP_017168293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,633,428 (-)NCBI
GRCm38843,129,806 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312805   ⟹   XP_017168294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,633,531 (-)NCBI
GRCm38843,129,806 - 43,180,494 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312806   ⟹   XP_017168295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,633,428 (-)NCBI
GRCm38843,129,806 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312808   ⟹   XP_017168297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,633,428 (-)NCBI
GRCm38843,129,806 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312809   ⟹   XP_017168298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,633,428 (-)NCBI
GRCm38843,129,806 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312810   ⟹   XP_017168299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,633,428 (-)NCBI
GRCm38843,129,806 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243537   ⟹   XP_030099397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,843 - 43,595,706 (-)NCBI
GRCm38843,129,806 - 43,142,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243538   ⟹   XP_030099398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,902 - 43,633,428 (-)NCBI
GRCm38843,129,865 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243539   ⟹   XP_030099399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,582,902 - 43,633,428 (-)NCBI
GRCm38843,129,865 - 43,180,391 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947277
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,583,342 - 43,595,713 (-)NCBI
GRCm38843,130,305 - 43,142,676 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_808410 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509485 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240521 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240524 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168289 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168290 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168291 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168292 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168293 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168294 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168295 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168297 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168298 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168299 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099397 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099398 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099399 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI41203 (Get FASTA)   NCBI Sequence Viewer  
  AAI45532 (Get FASTA)   NCBI Sequence Viewer  
  AAR87830 (Get FASTA)   NCBI Sequence Viewer  
  BAC36608 (Get FASTA)   NCBI Sequence Viewer  
  EDL35525 (Get FASTA)   NCBI Sequence Viewer  
  EDL35526 (Get FASTA)   NCBI Sequence Viewer  
  EDL35527 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000050267
  ENSMUSP00000050267.4
GenBank Protein Q8BVP1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_808410   ⟸   NM_177742
- UniProtKB: Q8BVP1 (UniProtKB/Swiss-Prot),   B2RUL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509485   ⟸   XM_006509422
- Peptide Label: isoform X4
- UniProtKB: B7ZNZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240524   ⟸   XM_011242222
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_011240521   ⟸   XM_011242219
- Peptide Label: isoform X3
- UniProtKB: B7ZNZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168294   ⟸   XM_017312805
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017168299   ⟸   XM_017312810
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017168298   ⟸   XM_017312809
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017168293   ⟸   XM_017312804
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017168295   ⟸   XM_017312806
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017168297   ⟸   XM_017312808
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017168292   ⟸   XM_017312803
- Peptide Label: isoform X7
- UniProtKB: B2RUL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168290   ⟸   XM_017312801
- Peptide Label: isoform X2
- UniProtKB: B2RUL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168289   ⟸   XM_017312800
- Peptide Label: isoform X1
- UniProtKB: B7ZNZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168291   ⟸   XM_017312802
- Peptide Label: isoform X5
- UniProtKB: B7ZNZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099397   ⟸   XM_030243537
- Peptide Label: isoform X6
- UniProtKB: B2RUL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030099399   ⟸   XM_030243539
- Peptide Label: isoform X10
RefSeq Acc Id: XP_030099398   ⟸   XM_030243538
- Peptide Label: isoform X9
Ensembl Acc Id: ENSMUSP00000050267   ⟸   ENSMUST00000059692
Protein Domains
B30.2/SPRY   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BVP1-F1-model_v2 AlphaFold Q8BVP1 1-470 view protein structure

Promoters
RGD ID:8666969
Promoter ID:EPDNEW_M11515
Type:initiation region
Name:Triml1_1
Description:Mus musculus tripartite motif family-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38843,141,500 - 43,141,560EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2687279 AgrOrtholog
Ensembl Genes ENSMUSG00000031651 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000059692 ENTREZGENE
  ENSMUST00000059692.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIM/RBCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:244448 UniProtKB/Swiss-Prot
MGD MGI:2687279 ENTREZGENE
NCBI Gene 244448 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIML1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Triml1 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RUL3 ENTREZGENE, UniProtKB/TrEMBL
  B7ZNZ0 ENTREZGENE, UniProtKB/TrEMBL
  Q6R5C3_MOUSE UniProtKB/TrEMBL
  Q8BVP1 ENTREZGENE, UniProtKB/Swiss-Prot