Zswim8 (zinc finger, SWIM-type containing 8) - Rat Genome Database

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Gene: Zswim8 (zinc finger, SWIM-type containing 8) Rattus norvegicus
Analyze
Symbol: Zswim8
Name: zinc finger, SWIM-type containing 8
RGD ID: 1309414
Description: Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be involved in several processes, including positive regulation of miRNA catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and target-directed miRNA degradation. Predicted to be located in cytosol. Predicted to be part of Cul2-RING ubiquitin ligase complex and Cul3-RING ubiquitin ligase complex. Orthologous to human ZSWIM8 (zinc finger SWIM-type containing 8); INTERACTS WITH (+)-schisandrin B; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103689945; LOC361004; RGD1309414; similar to KIAA0913 protein; uncharacterized protein LOC361004; zinc finger SWIM domain-containing protein 8; zinc finger SWIM domain-containing protein 8-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2153,573,780 - 3,589,501 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,573,780 - 3,589,487 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,583,977 - 3,599,678 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,970,457 - 4,986,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,582,782 - 3,598,483 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,006,470 - 4,022,238 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,006,470 - 4,022,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0153,737,336 - 3,749,884 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,798,661 - 3,814,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,798,662 - 3,814,888 (-)NCBI
Celera151,004,698 - 1,020,476 (+)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zswim8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2153,573,780 - 3,589,501 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,573,780 - 3,589,487 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,583,977 - 3,599,678 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,970,457 - 4,986,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,582,782 - 3,598,483 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,006,470 - 4,022,238 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,006,470 - 4,022,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0153,737,336 - 3,749,884 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,798,661 - 3,814,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,798,662 - 3,814,888 (-)NCBI
Celera151,004,698 - 1,020,476 (+)NCBICelera
Cytogenetic Map15p16NCBI
ZSWIM8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,785,606 - 73,801,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,785,606 - 73,801,797 (+)EnsemblGRCh38hg38GRCh38
GRCh371075,545,364 - 75,561,551 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361075,215,611 - 75,231,557 (+)NCBINCBI36Build 36hg18NCBI36
Celera1068,828,774 - 68,844,724 (+)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1069,540,456 - 69,556,632 (+)NCBIHuRef
CHM1_11075,827,159 - 75,843,337 (+)NCBICHM1_1
T2T-CHM13v2.01074,657,006 - 74,673,193 (+)NCBIT2T-CHM13v2.0
Zswim8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,756,346 - 20,773,687 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,757,620 - 20,773,687 (+)EnsemblGRCm39 Ensembl
GRCm381420,706,277 - 20,723,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,707,552 - 20,723,619 (+)EnsemblGRCm38mm10GRCm38
MGSCv371421,526,774 - 21,542,840 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361419,496,094 - 19,512,172 (+)NCBIMGSCv36mm8
Celera1417,090,368 - 17,106,434 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.53NCBI
Zswim8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,099,589 - 18,114,726 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543718,099,416 - 18,113,936 (-)NCBIChiLan1.0ChiLan1.0
ZSWIM8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11085,941,758 - 85,958,008 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01070,308,480 - 70,324,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11072,981,196 - 72,997,087 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,981,196 - 72,997,070 (+)Ensemblpanpan1.1panPan2
ZSWIM8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1424,220,505 - 24,234,933 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl424,220,797 - 24,234,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha424,358,096 - 24,372,525 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0424,500,861 - 24,515,301 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl424,501,153 - 24,515,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1424,398,011 - 24,412,438 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0424,598,439 - 24,612,868 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,953,486 - 24,967,921 (+)NCBIUU_Cfam_GSD_1.0
Zswim8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721356,854,246 - 56,870,576 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365215,346,971 - 5,363,332 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365215,346,971 - 5,363,297 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSWIM8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1476,511,310 - 76,525,877 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11476,511,157 - 76,525,883 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,637,641 - 82,652,523 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZSWIM8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1957,570,394 - 57,587,039 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl957,569,603 - 57,583,508 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604818,147,509 - 18,163,993 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zswim8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247547,302,249 - 7,316,108 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247547,302,177 - 7,316,308 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zswim8
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:309
Count of miRNA genes:135
Interacting mature miRNAs:153
Transcripts:ENSRNOT00000012696, ENSRNOT00000063831, ENSRNOT00000066608
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat

Markers in Region
RH134514  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,573,295 - 3,573,493 (+)MAPPERmRatBN7.2
Rnor_6.0154,005,986 - 4,006,183NCBIRnor6.0
Rnor_6.0153,760,247 - 3,760,444NCBIRnor6.0
Rnor_5.0153,736,852 - 3,737,049UniSTSRnor5.0
RGSC_v3.4153,798,177 - 3,798,374UniSTSRGSC3.4
Celera151,020,763 - 1,020,960UniSTS
RH 3.4 Map1547.9UniSTS
Cytogenetic Map15p16UniSTS
AA875438  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,573,819 - 3,574,044 (+)MAPPERmRatBN7.2
Rnor_6.0154,006,510 - 4,006,734NCBIRnor6.0
Rnor_6.0153,760,771 - 3,760,995NCBIRnor6.0
Rnor_5.0153,737,376 - 3,737,600UniSTSRnor5.0
RGSC_v3.4153,798,701 - 3,798,925UniSTSRGSC3.4
Celera151,020,212 - 1,020,436UniSTS
RH 3.4 Map1566.8UniSTS
Cytogenetic Map15p16UniSTS
GDB:642165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,573,568 - 3,573,643 (+)MAPPERmRatBN7.2
Rnor_6.0154,006,259 - 4,006,333NCBIRnor6.0
Rnor_6.0153,760,520 - 3,760,594NCBIRnor6.0
Rnor_5.0153,737,125 - 3,737,199UniSTSRnor5.0
RGSC_v3.4153,798,450 - 3,798,524UniSTSRGSC3.4
Celera151,020,613 - 1,020,687UniSTS
Cytogenetic Map15p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 37 51 35 19 35 3 5 74 35 41 11 3
Below cutoff 1 6 6 6 6 5 6 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000063831   ⟹   ENSRNOP00000061490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,573,780 - 3,589,487 (-)Ensembl
Rnor_6.0 Ensembl153,760,867 - 3,773,340 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081997   ⟹   ENSRNOP00000075092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,573,780 - 3,589,487 (-)Ensembl
Rnor_6.0 Ensembl154,006,470 - 4,022,223 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101173   ⟹   ENSRNOP00000094531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,573,780 - 3,589,487 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102899   ⟹   ENSRNOP00000076550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,573,786 - 3,589,487 (-)Ensembl
RefSeq Acc Id: NM_001271275   ⟹   NP_001258204
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,780 - 3,589,487 (-)NCBI
Rnor_6.0154,006,470 - 4,022,223 (-)NCBI
Rnor_5.0153,737,336 - 3,749,884 (-)NCBI
Celera151,004,698 - 1,020,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770546   ⟹   XP_008768768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,589,190 (-)NCBI
Rnor_6.0154,006,470 - 4,022,237 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770548   ⟹   XP_008768770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,574,115 - 3,589,190 (-)NCBI
Rnor_6.0154,006,470 - 4,021,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770549   ⟹   XP_008768771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,574,115 - 3,589,190 (-)NCBI
Rnor_6.0154,006,470 - 4,021,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770551   ⟹   XP_008768773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,589,190 (-)NCBI
Rnor_6.0154,006,471 - 4,021,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599733   ⟹   XP_017455222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,589,499 (-)NCBI
Rnor_6.0154,006,471 - 4,022,237 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599734   ⟹   XP_017455223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,589,500 (-)NCBI
Rnor_6.0154,006,471 - 4,022,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599735   ⟹   XP_017455224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,589,499 (-)NCBI
Rnor_6.0154,006,471 - 4,022,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093432   ⟹   XP_038949360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,585,426 (-)NCBI
RefSeq Acc Id: XM_039093433   ⟹   XP_038949361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,582,440 (-)NCBI
RefSeq Acc Id: XM_039093434   ⟹   XP_038949362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,582,440 (-)NCBI
RefSeq Acc Id: XM_039093435   ⟹   XP_038949363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,578,936 - 3,589,501 (-)NCBI
RefSeq Acc Id: XM_039093436   ⟹   XP_038949364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,573,781 - 3,579,635 (-)NCBI
RefSeq Acc Id: NP_001258204   ⟸   NM_001271275
- UniProtKB: A0A0G2K9R0 (UniProtKB/TrEMBL),   D4A5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768771   ⟸   XM_008770549
- Peptide Label: isoform X7
- UniProtKB: D4A5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768768   ⟸   XM_008770546
- Peptide Label: isoform X5
- UniProtKB: A0A8I6B124 (UniProtKB/TrEMBL),   D4A5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768770   ⟸   XM_008770548
- Peptide Label: isoform X6
- UniProtKB: D4A5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768773   ⟸   XM_008770551
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y637 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455224   ⟸   XM_017599735
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y637 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455223   ⟸   XM_017599734
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y637 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455222   ⟸   XM_017599733
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y637 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075092   ⟸   ENSRNOT00000081997
RefSeq Acc Id: XP_038949360   ⟸   XM_039093432
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y637 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949362   ⟸   XM_039093434
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038949361   ⟸   XM_039093433
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038949364   ⟸   XM_039093436
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038949363   ⟸   XM_039093435
- Peptide Label: isoform X11
RefSeq Acc Id: ENSRNOP00000061490   ⟸   ENSRNOT00000063831
RefSeq Acc Id: ENSRNOP00000076550   ⟸   ENSRNOT00000102899
RefSeq Acc Id: ENSRNOP00000094531   ⟸   ENSRNOT00000101173
Protein Domains
SWIM-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5A9-F1-model_v2 AlphaFold D4A5A9 1-1655 view protein structure
AF-A0A0G2K9R0-F1-model_v2 AlphaFold A0A0G2K9R0 1-1797 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699558
Promoter ID:EPDNEW_R10082
Type:initiation region
Name:Zswim8_1
Description:zinc finger, SWIM-type containing 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0154,022,199 - 4,022,259EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309414 AgrOrtholog
BioCyc Gene G2FUF-14560 BioCyc
Ensembl Genes ENSRNOG00000009596 Ensembl
  ENSRNOG00000056617 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000063831.5 UniProtKB/TrEMBL
  ENSRNOT00000081997 ENTREZGENE
  ENSRNOT00000081997.2 UniProtKB/TrEMBL
  ENSRNOT00000101173 ENTREZGENE
  ENSRNOT00000101173.1 UniProtKB/TrEMBL
  ENSRNOT00000102899.1 UniProtKB/TrEMBL
InterPro Znf_SWIM UniProtKB/TrEMBL
  ZSWIM4-8_C UniProtKB/TrEMBL
KEGG Report rno:361004 UniProtKB/TrEMBL
NCBI Gene 361004 ENTREZGENE
PANTHER ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 UniProtKB/TrEMBL
  ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 8 UniProtKB/TrEMBL
Pfam ZSWIM4-8_C UniProtKB/TrEMBL
PhenoGen Zswim8 PhenoGen
PROSITE ZF_SWIM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009596 RatGTEx
  ENSRNOG00000056617 RatGTEx
UniProt A0A0G2K9R0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y637 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B124 ENTREZGENE, UniProtKB/TrEMBL
  D4A5A9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zswim8  zinc finger, SWIM-type containing 8  LOC103689945  zinc finger SWIM domain-containing protein 8-like  Data merged from RGD:9188719 737654 PROVISIONAL
2014-08-25 LOC103689945  zinc finger SWIM domain-containing protein 8-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-11-07 Zswim8  zinc finger, SWIM-type containing 8  RGD1309414  similar to KIAA0913 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309414  similar to KIAA0913 protein   RGD1309414_predicted  similar to KIAA0913 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309414_predicted  similar to KIAA0913 protein (predicted)  LOC361004_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361004_predicted  similar to KIAA0913 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL