CUNH4orf50 (chromosome unknown C4orf50 homolog) - Rat Genome Database

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Gene: CUNH4orf50 (chromosome unknown C4orf50 homolog) Ictidomys tridecemlineatus
Analyze
Symbol: CUNH4orf50
Name: chromosome unknown C4orf50 homolog
RGD ID: 13086818
Description: ASSOCIATED WITH tooth and nail syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C4orf50 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,357,929 - 64,450,309 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647718,059,629 - 18,153,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CUNH4orf50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,357,929 - 64,450,309 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647718,059,629 - 18,153,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C4orf50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3845,897,587 - 6,018,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl45,897,373 - 6,200,555 (-)EnsemblGRCh38hg38GRCh38
GRCh3745,958,837 - 6,020,273 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,009,746 - 6,041,067 (-)NCBINCBI36Build 36hg18NCBI36
Celera45,858,375 - 5,889,687 (-)NCBICelera
Cytogenetic Map4p16.2-p16.1NCBI
HuRef45,834,032 - 5,926,830 (-)NCBIHuRef
CHM1_145,897,261 - 5,990,214 (-)NCBICHM1_1
T2T-CHM13v2.045,869,354 - 5,991,437 (-)NCBIT2T-CHM13v2.0
Gm1043
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,310,473 - 37,394,287 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl537,242,714 - 37,386,891 (+)EnsemblGRCm39 Ensembl
GRCm38537,153,129 - 37,236,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,085,370 - 37,229,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv37537,561,828 - 37,620,581 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36537,458,838 - 37,517,591 (+)NCBIMGSCv36mm8
Celera534,616,118 - 34,676,664 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.84NCBI
C14h4orf50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,785,948 - 77,871,957 (-)NCBIGRCr8
mRatBN7.21473,561,209 - 73,646,151 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,564,447 - 73,679,357 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01478,324,111 - 78,402,278 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,359,682 - 78,377,825 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01478,293,974 - 78,376,927 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41479,175,624 - 79,208,447 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1472,518,847 - 72,596,925 (-)NCBICelera
Cytogenetic Map14q21NCBI
LOC102010294
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555144,112,935 - 4,206,895 (+)NCBIChiLan1.0ChiLan1.0
C3H4orf50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,166,639 - 6,294,800 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,095,209 - 6,223,388 (-)NCBINHGRI_mPanPan1
PanPan1.146,038,439 - 6,096,571 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl46,038,439 - 6,096,571 (-)Ensemblpanpan1.1panPan2
C3H4orf50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,141,393 - 71,169,693 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,695,669 - 73,748,156 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0371,906,177 - 71,961,986 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,908,001 - 71,958,310 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1371,176,359 - 71,231,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,339,520 - 71,396,558 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,715,057 - 71,770,764 (-)NCBIUU_Cfam_GSD_1.0
C8H4orf50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.184,613,979 - 4,680,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.282,534,094 - 2,598,909 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH4orf50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,090,581 - 42,157,229 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604788,826,091 - 88,947,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH4orf50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475522,549,270 - 22,632,418 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021722113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040292677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005737114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_040292667   ⟹   XP_040148601
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,971 (-)NCBI
RefSeq Acc Id: XM_040292668   ⟹   XP_040148602
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,450,142 (-)NCBI
RefSeq Acc Id: XM_040292669   ⟹   XP_040148603
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,818 (-)NCBI
RefSeq Acc Id: XM_040292670   ⟹   XP_040148604
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,450,309 (-)NCBI
RefSeq Acc Id: XM_040292671   ⟹   XP_040148605
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,672 (-)NCBI
RefSeq Acc Id: XM_040292672   ⟹   XP_040148606
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,366,301 - 64,449,818 (-)NCBI
RefSeq Acc Id: XM_040292673   ⟹   XP_040148607
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,818 (-)NCBI
RefSeq Acc Id: XM_040292674   ⟹   XP_040148608
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,366,301 - 64,449,818 (-)NCBI
RefSeq Acc Id: XM_040292675   ⟹   XP_040148609
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,818 (-)NCBI
RefSeq Acc Id: XM_040292676   ⟹   XP_040148610
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,818 (-)NCBI
RefSeq Acc Id: XM_040292677   ⟹   XP_040148611
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737104
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737106
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,357,929 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737107
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,364,716 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737109
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,364,803 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737110
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,366,320 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737111
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,364,716 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737112
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,366,410 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737113
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,401,789 - 64,449,818 (-)NCBI
RefSeq Acc Id: XR_005737114
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528564,366,410 - 64,449,818 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040148604   ⟸   XM_040292670
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040148602   ⟸   XM_040292668
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040148601   ⟸   XM_040292667
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040148609   ⟸   XM_040292675
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040148611   ⟸   XM_040292677
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040148607   ⟸   XM_040292673
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040148603   ⟸   XM_040292669
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040148610   ⟸   XM_040292676
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040148605   ⟸   XM_040292671
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040148608   ⟸   XM_040292674
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040148606   ⟸   XM_040292672
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene CUNH4orf50 ENTREZGENE