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Gene: Tm9sf4 (transmembrane 9 superfamily member 4) Rattus norvegicus

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Symbol:

Tm9sf4

Name:

transmembrane 9 superfamily member 4

RGD ID:

1307768

Description:

Predicted to be involved in several processes, including positive regulation of protein localization; regulation of intracellular pH; and vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in Golgi apparatus and early endosome. Predicted to be active in membrane. Orthologous to human TM9SF4 (transmembrane 9 superfamily member 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC296279; MGC116278; transmembrane 9 superfamily protein member 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TM9SF4 (transmembrane 9 superfamily member 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tm9sf4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tm9sf4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TM9SF4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TM9SF4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tm9sf4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TM9SF4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TM9SF4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tm9sf4 (transmembrane 9 superfamily member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TM9SF4 (transmembrane 9 superfamily member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tm9sf4 (transmembrane 9 superfamily member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tm9sf4 (transmembrane 9 superfamily protein member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	EMP70	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	TM9SF4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZK858.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TMN2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TMN3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	162,086,758 - 162,135,620 (+)	NCBI		GRCr8
mRatBN7.2	3	141,627,128 - 141,675,386 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	141,627,346 - 141,675,386 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	145,531,787 - 145,578,425 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	154,115,587 - 154,162,223 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	151,854,688 - 151,901,357 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	148,635,822 - 148,689,961 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	148,635,775 - 148,688,553 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	155,406,725 - 155,457,981 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	143,502,896 - 143,557,285 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	143,408,517 - 143,462,907 (+)	NCBI
Celera	3	140,373,866 - 140,420,156 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium dichloride (ISO)

celecoxib (ISO)

CGP 52608 (ISO)

cyproconazole (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

leflunomide (EXP)

potassium dichromate (ISO)

propiconazole (ISO)

selenium atom (ISO)

tamibarotene (ISO)

temozolomide (ISO)

thapsigargin (EXP)

thiram (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA,ISO)

phagocytosis (IEA,ISO)

positive regulation of protein exit from endoplasmic reticulum (IEA,ISO,ISS)

positive regulation of protein localization to cell surface (IEA,ISO,ISS)

protein localization to membrane (IBA)

regulation of intracellular pH (IEA,ISO)

response to hypoxia (IEA,ISO)

vacuolar proton-transporting V-type ATPase complex assembly (IEA,ISO)

Cellular Component

early endosome (IEA,ISO,ISS)

Golgi apparatus (IEA,ISO,ISS)

membrane (IBA,IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19893578	PMID:25659576	PMID:25961573	PMID:25999474

Genomics

Comparative Map Data

Tm9sf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	162,086,758 - 162,135,620 (+)	NCBI		GRCr8
mRatBN7.2	3	141,627,128 - 141,675,386 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	141,627,346 - 141,675,386 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	145,531,787 - 145,578,425 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	154,115,587 - 154,162,223 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	151,854,688 - 151,901,357 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	148,635,822 - 148,689,961 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	148,635,775 - 148,688,553 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	155,406,725 - 155,457,981 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	143,502,896 - 143,557,285 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	143,408,517 - 143,462,907 (+)	NCBI
Celera	3	140,373,866 - 140,420,156 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

TM9SF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	32,109,714 - 32,167,256 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	32,109,714 - 32,167,258 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	30,697,517 - 30,755,059 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	30,184,476 - 30,218,720 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	30,184,475 - 30,218,720	NCBI
Celera	20	27,453,693 - 27,511,424 (+)	NCBI		Celera
Cytogenetic Map	20	q11.21	NCBI
HuRef	20	27,486,003 - 27,543,840 (+)	NCBI		HuRef
CHM1_1	20	30,601,192 - 30,658,875 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	33,834,368 - 33,891,894 (+)	NCBI		T2T-CHM13v2.0

Tm9sf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	152,999,279 - 153,052,386 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	153,003,223 - 153,052,386 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	153,161,301 - 153,210,466 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	153,161,303 - 153,210,466 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	152,987,037 - 153,036,199 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	152,852,742 - 152,901,904 (+)	NCBI		MGSCv36	mm8
Celera	2	158,987,638 - 159,037,408 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	75.41	NCBI

Tm9sf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	28,871,977 - 28,926,938 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	28,871,977 - 28,929,246 (-)	NCBI	ChiLan1.0	ChiLan1.0

TM9SF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	37,806,232 - 37,861,912 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	37,799,324 - 37,855,009 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	28,403,014 - 28,458,679 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	29,530,804 - 29,586,944 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	29,531,031 - 29,586,944 (+)	Ensembl	panpan1.1		panPan2

TM9SF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	21,522,234 - 21,573,653 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	21,523,303 - 21,571,975 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	21,168,323 - 21,219,743 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	22,208,692 - 22,260,112 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	22,209,527 - 22,260,112 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	21,487,187 - 21,538,594 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	21,592,369 - 21,643,776 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	22,023,146 - 22,074,561 (+)	NCBI		UU_Cfam_GSD_1.0

Tm9sf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	170,598,164 - 170,648,104 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	19,029,073 - 19,080,830 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	19,029,181 - 19,079,468 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TM9SF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	35,765,323 - 35,822,359 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	35,765,103 - 35,822,359 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	40,696,156 - 40,719,825 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TM9SF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	36,499,405 - 36,551,647 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	36,499,402 - 36,553,443 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	90,358,046 - 90,414,736 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tm9sf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	402,111 - 447,867 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	402,111 - 447,871 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tm9sf4
106 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	84
Count of miRNA genes:	71
Interacting mature miRNAs:	78
Transcripts:	ENSRNOT00000067261
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	121056165	145956249	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	140069424	146976080	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat

Markers in Region

AA986553

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	141,673,535 - 141,673,663 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	148,688,112 - 148,688,239	NCBI	Rnor6.0
Rnor_5.0	3	155,408,447 - 155,408,574	UniSTS	Rnor5.0
RGSC_v3.4	3	143,557,063 - 143,557,190	UniSTS	RGSC3.4
Celera	3	140,419,934 - 140,420,061	UniSTS
Cytogenetic Map	3	q41	UniSTS

BE121008

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	141,661,792 - 141,661,965 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	148,676,464 - 148,676,636	NCBI	Rnor6.0
Rnor_5.0	3	155,420,050 - 155,420,222	UniSTS	Rnor5.0
RGSC_v3.4	3	143,545,416 - 143,545,588	UniSTS	RGSC3.4
Celera	3	140,408,275 - 140,408,447	UniSTS
RH 3.4 Map	3	1275.0	UniSTS
Cytogenetic Map	3	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067261 ⟹ ENSRNOP00000062975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	141,644,467 - 141,675,386 (+)	Ensembl
Rnor_6.0 Ensembl	3	148,635,775 - 148,688,553 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081370 ⟹ ENSRNOP00000075230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	141,627,346 - 141,675,382 (+)	Ensembl
Rnor_6.0 Ensembl	3	148,654,668 - 148,688,227 (+)	Ensembl

RefSeq Acc Id:

NM_001025649 ⟹ NP_001020820

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,087,391 - 162,133,993 (+)	NCBI
mRatBN7.2	3	141,627,154 - 141,673,758 (+)	NCBI
Rnor_6.0	3	148,635,822 - 148,688,334 (+)	NCBI
Rnor_5.0	3	155,406,725 - 155,457,981 (-)	NCBI
RGSC_v3.4	3	143,502,896 - 143,557,285 (+)	RGD
Celera	3	140,373,866 - 140,420,156 (+)	RGD

Sequence:

show sequence

GGCTCCAATAGTTACACCGTATGTTCTCTTCACCTAGTCAGAGACCTCACTGCCAGACCAGTTT
GTCAAGGAGAAATTAAGCTTCTTTTACCTCCTCACTACTGCGACTACAGAAGAATTTGAACCAA
GGAGTCCCCTTAGTGGGGATACACTCGGTACCCACAGAAGCACCACTTCCGCTGACGTCATCAC
GCTGACACGTGGATCCAAGATGGCGGCGGCGATGATTTGGTGGCCGAGGTTCCTACTACTTCTC
TGTCTAACGTGTAAAGGAAGCACCTTCTATGTCCCTGGAGTCGCGCCAATCAACTTCCACCAAA
ACGACCCAGTAGAGATCAAGGCTGTGAAGCTTACCAGCTCTCGAACCCAGCTTCCTTATGAGTA
CTATTCATTGCCCTTCTGCCAGCCCAACAAGATAACCTACAAGGCAGAGAATCTAGGAGAGGTG
CTGAGAGGGGACCGGATTGTCAACACCCCTTTCCAAGTTCTCATGAACAGTGAGAAGAAGTGTG
AAGTTCTGTGCGGCCAGTCCAACAAGCCAGTAATCTTGACAGTGGAACAGAGCCGGCTGGTGGC
CGAGCGAATCACAGAAGAGTACTATGTTCACCTCATTGCTGACAACCTGCCTGTGGCCACCCGG
CTGGAGCTCTACTCCAGCAACCGTGACAGTGATGACAAGAAGAAAGAAAAAGACGTGCAGTTTG
AACATGGCTACAGACTTGGCTTCACGGATGTCAACAAGATCTACCTGCACAATCACCTCTCGTT
CATCCTTTATTACCATCGGGAGGACACGGAAGAGGATCAGGAGCACACGTACCGAGTCGTCCGC
TTCGAGGTGATTCCCCAGAGCATCAGGCTGGAGGACCTCAAAATAGACGAGAAGAGCTCATGTA
CCCTACCCGAGGGTGCCAACTCCTTACCCCAAGAAATTGACCCCACTAAGGAGAATCAGCTGTA
CTTCACCTACTCTGTGCACTGGGAGGAAAGTGACATCAAGTGGGCCTCTCGATGGGACACTTAC
CTAACCATGAGTGATGTGCAGATCCACTGGTTTTCCATCATTAACTCTGTCGTGGTGGTCTTCT
TCCTGTCAGGCATCCTCAGCATGATTATCATCCGGACGCTGCGGAAGGACATCGCCAACTACAA
CAAGGAGGATGACATTGAAGACACTATGGAGGAGTCTGGGTGGAAGCTTGTGCATGGTGACGTC
TTCAGGCCGCCCCAGTATCCCATGATCCTCAGCTCTCTGCTAGGCTCAGGCATTCAGCTCTTCT
GCATGATCCTGATTGTCATCTTTGTGGCCATGCTTGGGATGCTGTCGCCCTCCAGCCGGGGAGC
GCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGGGGTATTTGGTGGATTTTCTGCTGGC
CGCCTTTACAGAACTCTAAAGGGCCATCGGTGGAAGAAAGGAGCCTTCTGTACAGCGACACTGT
ATCCTGGCGTGGTTTTTGGCATCTGCTTTGTGTTGAATTGCTTCATCTGGGGAAAGCACTCATC
AGGAGCGGTACCCTTTCCCACCATGGTGGCGTTGCTGTGTATGTGGTTCGGGATCTCCCTGCCC
CTTGTCTACTTAGGCTACTATTTCGGCTTCCGCAAGCAGCCATATGACAACCCTGTGCGCACAA
ACCAGATTCCCCGGCAGATCCCTGAGCAACGGTGGTACATGAACCGATTTGTGGGCATCCTCAT
GGCTGGGATCCTGCCCTTTGGTGCCATGTTTATTGAGCTGTTCTTCATCTTCAGTGCAATCTGG
GAGAACCAGTTCTATTACCTCTTCGGTTTCCTATTCCTTGTTTTCATCATCCTGGTGGTATCCT
GTTCACAGATCAGCATCGTCATGGTGTACTTCCAACTGTGTGCAGAGGATTACCGCTGGTGGTG
GAGGAATTTCCTTGTCTCAGGGGGATCTGCATTCTACGTCCTGGTTTATGCCATCTTTTATTTT
GTTAACAAGCTGGACATCGTGGAGTTCATCCCTTCTCTCCTCTACTTTGGCTACACCACCCTCA
TGGTCCTGTCCTTCTGGCTGCTCACAGGGACCATCGGCTTCTATGCAGCCTACATGTTTGTCCG
CAAGATCTATGCTGCTGTGAAGATAGACTGAGTGGGTGAACCAACACTAGGCCCACTGGATCCT
CGGACAGGAAGCCACCCTGCGTGGGGAACTGCAGGCACACAAAATAAAATAACTCCTGCTCATT
TGGAATGTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235284 ⟹ XP_006235346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	162,086,758 - 162,135,620 (+)	NCBI
mRatBN7.2	3	141,627,128 - 141,675,386 (+)	NCBI
Rnor_6.0	3	148,635,940 - 148,689,961 (+)	NCBI
Rnor_5.0	3	155,406,725 - 155,457,981 (-)	NCBI

Sequence:

show sequence

TTTGAACCAAGGAGTCCCCTTAGTGGGGATACACTCGGTACCCACAGAAGCACCACTTCCGCTG
ACGTCATCACGCTGACACGTGGATCCAAGATGGCGGCGGCGATGCAGATTTGGTGGCCGAGGTT
CCTACTACTTCTCTGTCTAACGTGTAAAGGAAGCACCTTCTATGTCCCTGGAGTCGCGCCAATC
AACTTCCACCAAAACGACCCAGTAGAGATCAAGGCTGTGAAGCTTACCAGCTCTCGAACCCAGC
TTCCTTATGAGTACTATTCATTGCCCTTCTGCCAGCCCAACAAGATAACCTACAAGGCAGAGAA
TCTAGGAGAGGTGCTGAGAGGGGACCGGATTGTCAACACCCCTTTCCAAGTTCTCATGAACAGT
GAGAAGAAGTGTGAAGTTCTGTGCGGCCAGTCCAACAAGCCAGTAATCTTGACAGTGGAACAGA
GCCGGCTGGTGGCCGAGCGAATCACAGAAGAGTACTATGTTCACCTCATTGCTGACAACCTGCC
TGTGGCCACCCGGCTGGAGCTCTACTCCAGCAACCGTGACAGTGATGACAAGAAGAAAGAAAAA
GACGTGCAGTTTGAACATGGCTACAGACTTGGCTTCACGGATGTCAACAAGATCTACCTGCACA
ATCACCTCTCGTTCATCCTTTATTACCATCGGGAGGACACGGAAGAGGATCAGGAGCACACGTA
CCGAGTCGTCCGCTTCGAGGTGATTCCCCAGAGCATCAGGCTGGAGGACCTCAAAATAGACGAG
AAGAGCTCATGTACCCTACCCGAGGGTGCCAACTCCTTACCCCAAGAAATTGACCCCACTAAGG
AGAATCAGCTGTACTTCACCTACTCTGTGCACTGGGAGGAAAGTGACATCAAGTGGGCCTCTCG
ATGGGACACTTACCTAACCATGAGTGATGTGCAGATCCACTGGTTTTCCATCATTAACTCTGTC
GTGGTGGTCTTCTTCCTGTCAGGCATCCTCAGCATGATTATCATCCGGACGCTGCGGAAGGACA
TCGCCAACTACAACAAGGAGGATGACATTGAAGACACTATGGAGGAGTCTGGGTGGAAGCTTGT
GCATGGTGACGTCTTCAGGCCGCCCCAGTATCCCATGATCCTCAGCTCTCTGCTAGGCTCAGGC
ATTCAGCTCTTCTGCATGATCCTGATTGTCATCTTTGTGGCCATGCTTGGGATGCTGTCGCCCT
CCAGCCGGGGAGCGCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGGGGTATTTGGTGG
ATTTTCTGCTGGCCGCCTTTACAGAACTCTAAAGGGCCATCGGTGGAAGAAAGGAGCCTTCTGT
ACAGCGACACTGTATCCTGGCGTGGTTTTTGGCATCTGCTTTGTGTTGAATTGCTTCATCTGGG
GAAAGCACTCATCAGGAGCGGTACCCTTTCCCACCATGGTGGCGTTGCTGTGTATGTGGTTCGG
GATCTCCCTGCCCCTTGTCTACTTAGGCTACTATTTCGGCTTCCGCAAGCAGCCATATGACAAC
CCTGTGCGCACAAACCAGATTCCCCGGCAGATCCCTGAGCAACGGTGGTACATGAACCGATTTG
TGGGCATCCTCATGGCTGGGATCCTGCCCTTTGGTGCCATGTTTATTGAGCTGTTCTTCATCTT
CAGTGCAATCTGGGAGAACCAGTTCTATTACCTCTTCGGTTTCCTATTCCTTGTTTTCATCATC
CTGGTGGTATCCTGTTCACAGATCAGCATCGTCATGGTGTACTTCCAACTGTGTGCAGAGGATT
ACCGCTGGTGGTGGAGGAATTTCCTTGTCTCAGGGGGATCTGCATTCTACGTCCTGGTTTATGC
CATCTTTTATTTTGTTAACAAGCTGGACATCGTGGAGTTCATCCCTTCTCTCCTCTACTTTGGC
TACACCACCCTCATGGTCCTGTCCTTCTGGCTGCTCACAGGGACCATCGGCTTCTATGCAGCCT
ACATGTTTGTCCGCAAGATCTATGCTGCTGTGAAGATAGACTGAGTGGGTGAACCAACACTAGG
CCCACTGGATCCTCGGACAGGAAGCCACCCTGCGTGGGGAACTGCAGGCACACAAAATAAAATA
ACTCCTGCTCATTTGGAATGTAACTCCTGGCACAGTGTTCCTAGACTCCCAGGCTGCATGGGGG
GCAGGAGGGCCTGTAGATAACCCTTCCATTCCTTCATCTCATTCAGTCTGGAGGGATACATTTT
TCTGTGGTTGTTTTTCTTGAGCTAAGAGTCTCCTTCAGCAGGAGCTTTCTGACCTGTTAATTCA
GGTTCTTTTGGTTTGGGTTGGGGTTTTTTTGTTTTTTTGGTTTTGGCTTGTTTTTTTTTTTTTG
TTTGTTTGTTTTTGTTTTTTTTTTTCTTTTGTTTTGTTTTTAAACGTGGAGATTCAGGATGGAT
AAGTGTGGGGTTTTGATCACTGTCCCCATCAGCTCCTCAGAGTTGTTGGCTACCCTACTACTAA
CTGGAAGAGAGGAAACACCAGGGCTGCGGTGAGGGCTCCAAGTCTCTCATTGCCCATCCTCGCC
ACTGATGCCACAACAACACAGCTGCAGCCCAGACAGTAACCTCAGTGCCAACCAAGCCCTGCCA
GCCCCTCCCCCATTCTCTTCCCCAGCCTGCCCTCTGCTGCCCAAAACAAGGCTGCCAGCCAGGC
CTTTGGTCATCGTTTTGACTGGGAATACTTGGTCACTCCAAGAACATGTCCTGGTTCCCTGGGA
CAGCAGGATCCCCTCATCAAAGCATCCAGAGTTTGCGACCACCAAGGAAGAAATGAGGCCTGCA
GTGACTGTTCTCGTGCCAAGAAGCCCTGGGCCAGGGCCGAGTGTTTCCATGCCCATGTGTGTGT
GGGAAGAGGTGGCCAAAGCCGCTAGACTAGGGTGCTCACCCTCATGGTTGTTCCCCAGTCTTTC
CCTCAGGGGCACTGCTCTTTCTAAAGGGTGATGGTGGACCCCTTCTTCCCTCACCTTCAGGTCT
AGAGTCTTCAGATCTCTCTCTTCCTCATGGCCTTGGCCCCAGCATTTATTCTCAGTTCTTTTAG
CCAGACCCATCCCCTCTTCCTCCCGTGCAAGTTCTCTTGGGGACACCCAGAAAACTTCTCTGAG
AAGGAAAATGGAAGGTAAGTTGGGTTGCTCCTTTCCCAGTTCCTAGGAAGAGACAAGCCAGTCT
CCCCAAGGTGGAAAGAGGCTCATGTACCTGGCCTAGTTCCTCGGCCCTACCCGAGCCCCTGCAA
AGCCTGTGCAGATCATAGACTTTGCTCTTAAGTAGCAAGAGACCAAACCCACCTTGGGTGTAGG
GGTCAATAACAGCCACTGGCCCTTGTTCCAGTACTTTGGGAACCTGCCAGGAGACAAAGCTCAG
GATGCTGCTTATGCTGGGAACACACCCTACCCTCACTGCCCCCACTCCTGGGGCCCTGCTGCCA
TCAGCAGTCAAATCAGTGCACCTCTCATCTTGCCTCACAGTGACTTCGCAGCACTGAGTGGCAT
CCACCAAGAATCAGGCTAGAGAAATGGGAGCCCGAGAGTAGAGAGTGATTGGGAGTTACTTGTT
CATTCAAATCCTGCACCTCAACCCCCAAGGTTCTCATTGTCAGGGATGGGTGGGGGAAAGGTTC
AAACATTGTCAATTTTTCTGACTTTTTAAATCATCATCATTATTTTTAATTAAAAAAAAATGCC
TGTATGCCTTTTTCTGGTCCAATTGTAAATAAAATGCCATTGTCCTGTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020820	(Get FASTA)	NCBI Sequence Viewer
	XP_006235346	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99133	(Get FASTA)	NCBI Sequence Viewer
	EDL86013	(Get FASTA)	NCBI Sequence Viewer
	EDL86014	(Get FASTA)	NCBI Sequence Viewer
	EDL86015	(Get FASTA)	NCBI Sequence Viewer
	EDL86016	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062975.2
	ENSRNOP00000075230
	ENSRNOP00000075230.2
GenBank Protein	Q4KLL4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001020820 ⟸ NM_001025649
- Peptide Label:	precursor
- UniProtKB:	Q4KLL4 (UniProtKB/Swiss-Prot), A6KHT9 (UniProtKB/TrEMBL), A0A0G2KA25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAMIWWPRFLLLLCLTCKGSTFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFC QPNKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCGQSNKPVILTVEQSRLVAERITEE YYVHLIADNLPVATRLELYSSNRDSDDKKKEKDVQFEHGYRLGFTDVNKIYLHNHLSFILYYHR EDTEEDQEHTYRVVRFEVIPQSIRLEDLKIDEKSSCTLPEGANSLPQEIDPTKENQLYFTYSVH WEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDIE DTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTAC FLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFP TMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPF GAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVS GGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAV KID hide sequence

RefSeq Acc Id:	XP_006235346 ⟸ XM_006235284
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KA25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAMQIWWPRFLLLLCLTCKGSTFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPF CQPNKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCGQSNKPVILTVEQSRLVAERITE EYYVHLIADNLPVATRLELYSSNRDSDDKKKEKDVQFEHGYRLGFTDVNKIYLHNHLSFILYYH REDTEEDQEHTYRVVRFEVIPQSIRLEDLKIDEKSSCTLPEGANSLPQEIDPTKENQLYFTYSV HWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDI EDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTA CFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPF PTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILP FGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLV SGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAA VKID hide sequence

Ensembl Acc Id:

ENSRNOP00000062975 ⟸ ENSRNOT00000067261

Ensembl Acc Id:

ENSRNOP00000075230 ⟸ ENSRNOT00000081370

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLL4-F1-model_v2	AlphaFold	Q4KLL4	1-643	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692558

Promoter ID:

EPDNEW_R3083

Type:

single initiation site

Name:

Tm9sf4_2

Description:

transmembrane 9 superfamily member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3084

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	148,635,807 - 148,635,867	EPDNEW

RGD ID:

13692559

Promoter ID:

EPDNEW_R3084

Type:

multiple initiation site

Name:

Tm9sf4_1

Description:

transmembrane 9 superfamily member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3083

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	148,636,022 - 148,636,082	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307768	AgrOrtholog
BioCyc Gene	G2FUF-47225	BioCyc
Ensembl Genes	ENSRNOG00000009406	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067261.3	UniProtKB/TrEMBL
	ENSRNOT00000081370	UniProtKB/TrEMBL
	ENSRNOT00000081370.2	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7454474	IMAGE-MGC_LOAD
InterPro	EMP70	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:296279	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:116278	IMAGE-MGC_LOAD
NCBI Gene	296279	ENTREZGENE
PANTHER	PTHR10766	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSMEMBRANE 9 SUPERFAMILY MEMBER 4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	EMP70	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tm9sf4	PhenoGen
RatGTEx	ENSRNOG00000009406	RatGTEx
UniProt	A0A0G2KA25	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QWA3_RAT	UniProtKB/TrEMBL
	A6KHT9	ENTREZGENE, UniProtKB/TrEMBL
	A6KHU0_RAT	UniProtKB/TrEMBL
	A6KHU1_RAT	UniProtKB/TrEMBL
	A6KHU2_RAT	UniProtKB/TrEMBL
	Q4KLL4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-29	Tm9sf4	transmembrane 9 superfamily member 4	Tm9sf4	transmembrane 9 superfamily protein member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Tm9sf4	transmembrane 9 superfamily protein member 4	Tm9sf4_predicted	transmembrane 9 superfamily protein member 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Tm9sf4_predicted	transmembrane 9 superfamily protein member 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar