Ylpm1 (YLP motif containing 1) - Rat Genome Database

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Gene: Ylpm1 (YLP motif containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ylpm1
Name: YLP motif containing 1
RGD ID: 12736961
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of telomere maintenance (ortholog); ASSOCIATED WITH intellectual disability (ortholog); myoepithelioma (ortholog); FOUND IN nuclear speck (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: YLP motif-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864028,071,778 - 28,147,170 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364883,922,308 - 3,997,930 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364883,922,314 - 3,997,187 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear speck  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ylpm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864028,071,778 - 28,147,170 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364883,922,308 - 3,997,930 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364883,922,314 - 3,997,187 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YLPM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381474,763,316 - 74,837,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1474,763,316 - 74,859,435 (+)EnsemblGRCh38hg38GRCh38
GRCh371475,230,019 - 75,304,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,299,822 - 74,373,766 (+)NCBINCBI36Build 36hg18NCBI36
Celera1455,268,437 - 55,342,377 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,398,053 - 55,472,008 (+)NCBIHuRef
CHM1_11475,169,242 - 75,243,180 (+)NCBICHM1_1
T2T-CHM13v2.01468,972,425 - 69,046,421 (+)NCBIT2T-CHM13v2.0
Ylpm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,042,977 - 85,130,501 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1285,043,095 - 85,117,289 (+)EnsemblGRCm39 Ensembl
GRCm381284,996,203 - 85,088,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,996,321 - 85,070,515 (+)EnsemblGRCm38mm10GRCm38
MGSCv371286,337,271 - 86,411,465 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361285,885,492 - 85,959,595 (+)NCBIMGSCv36mm8
Celera1286,453,641 - 86,527,763 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.5NCBI
Ylpm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86110,373,371 - 110,449,578 (+)NCBIGRCr8
mRatBN7.26104,642,615 - 104,718,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,642,615 - 104,718,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6104,812,087 - 104,887,860 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06105,111,262 - 105,187,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,480,616 - 104,556,387 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06108,820,774 - 108,897,209 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6108,820,774 - 108,897,426 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,659,698 - 116,736,133 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46109,041,410 - 109,117,751 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6102,465,583 - 102,541,251 (+)NCBICelera
Cytogenetic Map6q31NCBI
Ylpm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523722,200 - 784,232 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955523721,447 - 784,097 (-)NCBIChiLan1.0ChiLan1.0
YLPM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21575,846,087 - 75,918,992 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11475,062,592 - 75,135,497 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01455,315,429 - 55,388,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11474,160,705 - 74,233,548 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1474,160,867 - 74,232,769 (+)Ensemblpanpan1.1panPan2
YLPM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1847,878,176 - 47,957,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl847,878,298 - 47,980,569 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,561,704 - 47,640,166 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0848,104,816 - 48,183,570 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl848,104,852 - 48,200,943 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1847,775,819 - 47,854,533 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0847,797,158 - 47,875,862 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0848,195,155 - 48,274,094 (+)NCBIUU_Cfam_GSD_1.0
YLPM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl797,976,144 - 98,042,230 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1797,976,129 - 98,042,234 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27103,818,803 - 103,886,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
YLPM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12451,975,723 - 52,048,936 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2451,975,767 - 52,076,365 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605340,209,682 - 40,283,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ylpm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473426,867,550 - 26,932,469 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473426,865,617 - 26,932,670 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000014592   ⟹   ENSSTOP00000013074
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364883,922,308 - 3,997,930 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000034641   ⟹   ENSSTOP00000025120
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364883,922,324 - 3,995,308 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000038001   ⟹   ENSSTOP00000031251
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364883,922,308 - 3,997,930 (+)Ensembl
RefSeq Acc Id: XM_005321239   ⟹   XP_005321296
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864028,071,778 - 28,147,170 (-)NCBI
SpeTri2.0NW_0049364883,922,314 - 3,997,187 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321296 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013074.3
  ENSSTOP00000025120.1
  ENSSTOP00000031251.1
RefSeq Acc Id: XP_005321296   ⟸   XM_005321239
- UniProtKB: I3MN79 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000031251   ⟸   ENSSTOT00000038001
Ensembl Acc Id: ENSSTOP00000025120   ⟸   ENSSTOT00000034641
Ensembl Acc Id: ENSSTOP00000013074   ⟸   ENSSTOT00000014592


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014581 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014592.3 UniProtKB/TrEMBL
  ENSSTOT00000034641.1 UniProtKB/TrEMBL
  ENSSTOT00000038001.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  YLP_motif_con_p1 UniProtKB/TrEMBL
NCBI Gene Ylpm1 ENTREZGENE
PANTHER PTHR13413 UniProtKB/TrEMBL
  YLP MOTIF-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam AAA_33 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287CUW8_ICTTR UniProtKB/TrEMBL
  I3MN79 ENTREZGENE, UniProtKB/TrEMBL