LOC101961596 (patr class I histocompatibility antigen, A-108 alpha chain-like) - Rat Genome Database

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Gene: LOC101961596 (patr class I histocompatibility antigen, A-108 alpha chain-like) Ictidomys tridecemlineatus
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Symbol: LOC101961596
Name: patr class I histocompatibility antigen, A-108 alpha chain-like
RGD ID: 12736784
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); FOUND IN external side of plasma membrane (inferred); extracellular space (inferred); lumenal side of endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HLA class I histocompatibility antigen, B-57 alpha chain-like; saoe class I histocompatibility antigen, A alpha chain-like
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494637,998,790 - 38,002,287 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647625,957,980 - 25,961,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040282439   ⟹   XP_040138373
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494637,998,790 - 38,002,287 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040138373 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020604.2
GenBank Protein KAG3289185 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040138373   ⟸   XM_040282439
- UniProtKB: I3N8A8 (UniProtKB/TrEMBL)
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028098 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028638.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
NCBI Gene LOC101961596 ENTREZGENE
PANTHER CLASS IB MHC ANTIGEN QA-2-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54452 UniProtKB/TrEMBL
UniProt I3N8A8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101961596  patr class I histocompatibility antigen, A-108 alpha chain-like  LOC101961596  HLA class I histocompatibility antigen, B-57 alpha chain-like  Symbol and/or name change 5135510 APPROVED
2017-07-13 LOC101961596  HLA class I histocompatibility antigen, B-57 alpha chain-like    saoe class I histocompatibility antigen, A alpha chain-like  Symbol and/or name change 5135510 APPROVED