Abracl (ABRA C-terminal like) - Rat Genome Database

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Gene: Abracl (ABRA C-terminal like) Ictidomys tridecemlineatus
Analyze
Symbol: Abracl
Name: ABRA C-terminal like
RGD ID: 12736415
Description: INVOLVED IN regulation of actin filament-based process (inferred); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: costars family protein ABRACL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,299,375 - 126,311,342 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365606,078,625 - 6,090,612 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365606,078,659 - 6,090,222 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Abracl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,299,375 - 126,311,342 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365606,078,625 - 6,090,612 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365606,078,659 - 6,090,222 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABRACL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386139,028,745 - 139,043,302 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6139,028,745 - 139,043,302 (+)EnsemblGRCh38hg38GRCh38
GRCh376139,349,882 - 139,364,439 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,391,512 - 139,406,132 (+)NCBINCBI36Build 36hg18NCBI36
Celera6140,089,868 - 140,104,496 (+)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,911,451 - 136,925,964 (+)NCBIHuRef
CHM1_16139,612,858 - 139,627,484 (+)NCBICHM1_1
T2T-CHM13v2.06140,215,028 - 140,231,830 (+)NCBIT2T-CHM13v2.0
Abracl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391017,887,008 - 17,899,000 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1017,887,008 - 17,899,036 (-)EnsemblGRCm39 Ensembl
GRCm381018,011,260 - 18,023,252 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,011,260 - 18,023,288 (-)EnsemblGRCm38mm10GRCm38
MGSCv371017,731,066 - 17,743,058 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,700,677 - 17,728,665 (-)NCBIMGSCv36mm8
Celera1017,909,262 - 17,921,258 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.39NCBI
Abracl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,474,802 - 14,484,992 (-)NCBIGRCr8
mRatBN7.2112,654,951 - 12,665,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,654,838 - 12,665,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx112,426,988 - 12,437,196 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0118,428,914 - 18,439,123 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0112,635,289 - 12,645,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0113,165,583 - 13,175,773 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,165,572 - 13,175,876 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0114,859,230 - 14,869,420 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,063,558 - 13,073,748 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera111,112,403 - 11,122,593 (-)NCBICelera
Cytogenetic Map1p12NCBI
Abracl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,634,071 - 20,645,609 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,634,128 - 20,645,609 (-)NCBIChiLan1.0ChiLan1.0
ABRACL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,996,095 - 159,010,940 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,890,068 - 156,904,672 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,789,968 - 136,804,723 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,871,265 - 140,885,938 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,871,264 - 140,889,288 (+)Ensemblpanpan1.1panPan2
ABRACL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,254,959 - 31,267,167 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,254,551 - 31,275,981 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,128,027 - 32,140,741 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,415,757 - 31,428,486 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,416,541 - 31,428,489 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,291,698 - 31,304,485 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0131,173,987 - 31,186,660 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,485,157 - 31,498,022 (+)NCBIUU_Cfam_GSD_1.0
ABRACL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,432,706 - 25,447,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,432,314 - 25,447,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,570,439 - 28,585,808 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABRACL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,354,533 - 34,369,070 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,354,279 - 34,364,673 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,497,900 - 6,512,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abracl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475314,922,862 - 14,935,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475314,923,097 - 14,935,432 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000030007   ⟹   ENSSTOP00000021884
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365606,078,625 - 6,090,612 (+)Ensembl
RefSeq Acc Id: XM_005329812   ⟹   XP_005329869
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946126,299,375 - 126,311,342 (+)NCBI
SpeTri2.0NW_0049365606,078,659 - 6,090,222 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329869 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021884.1
GenBank Protein KAG3290359 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005329869   ⟸   XM_005329812
- UniProtKB: I3NBY7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000021884   ⟸   ENSSTOT00000030007
Protein Domains
Costars


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020001 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000030007.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1540 UniProtKB/TrEMBL
InterPro Costars UniProtKB/TrEMBL
  Costars_dom UniProtKB/TrEMBL
  Costars_sf UniProtKB/TrEMBL
NCBI Gene Abracl ENTREZGENE
PANTHER COSTARS FAMILY PROTEIN ABRACL UniProtKB/TrEMBL
  PTHR46334 UniProtKB/TrEMBL
Pfam Costars UniProtKB/TrEMBL
SMART Costars UniProtKB/TrEMBL
UniProt I3NBY7 ENTREZGENE, UniProtKB/TrEMBL