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Gene: Gmeb2 (glucocorticoid modulatory element binding protein 2) Ictidomys tridecemlineatus

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Symbol:

Gmeb2

Name:

glucocorticoid modulatory element binding protein 2

RGD ID:

12734854

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal recessive dyskeratosis congenita 5 (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

glucocorticoid modulatory element binding protein 2, transcript variant X1; glucocorticoid modulatory element binding protein 2, transcript variant X2; glucocorticoid modulatory element binding protein 2, transcript variant X3; glucocorticoid modulatory element-binding protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,422,396 - 195,450,389 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	10,876,029 - 10,904,055 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	10,876,039 - 10,904,022 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nocturnal frontal lobe epilepsy (ISO)

autosomal recessive dyskeratosis congenita 5 (ISO)

benign familial infantile seizures 6 (ISO)

developmental and epileptic encephalopathy (ISO)

developmental and epileptic encephalopathy 33 (ISO)

early infantile epileptic encephalopathy (ISO)

neuronal ceroid lipofuscinosis (ISO)

Pulmonary Fibrosis and/or Bone Marrow Failure Syndrome, Telomere-Related, 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (ISO)

identical protein binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Gmeb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,422,396 - 195,450,389 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	10,876,029 - 10,904,055 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	10,876,039 - 10,904,022 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GMEB2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	63,587,605 - 63,627,101 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	63,587,602 - 63,627,101 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	62,218,958 - 62,258,454 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	61,689,399 - 61,721,673 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	61,689,398 - 61,721,673	NCBI
Celera	20	58,899,645 - 58,938,975 (-)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	58,949,205 - 58,988,662 (-)	NCBI		HuRef
CHM1_1	20	62,119,946 - 62,159,388 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,401,053 - 65,440,974 (-)	NCBI		T2T-CHM13v2.0

Gmeb2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	180,893,240 - 180,933,481 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	180,893,242 - 180,929,828 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	181,251,449 - 181,288,106 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	181,251,449 - 181,288,035 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	180,986,156 - 181,022,671 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	181,180,858 - 181,217,373 (-)	NCBI		MGSCv36	mm8
Celera	2	185,334,258 - 185,370,656 (-)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.63	NCBI

Gmeb2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,740,210 - 188,778,377 (-)	NCBI		GRCr8
mRatBN7.2	3	168,362,650 - 168,400,788 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,362,650 - 168,400,788 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	172,743,290 - 172,781,413 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,702,391 - 181,740,513 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,363,600 - 178,401,733 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,756,006 - 176,791,960 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,753,860 - 176,791,960 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	180,463,794 - 180,501,893 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	170,394,799 - 170,430,752 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	170,300,837 - 170,336,788 (-)	NCBI
Celera	3	164,185,677 - 164,221,207 (+)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

Gmeb2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	611,736 - 638,698 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955528	603,817 - 638,698 (+)	NCBI	ChiLan1.0	ChiLan1.0

GMEB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,393,742 - 69,433,267 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,385,746 - 69,425,125 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	20	61,513,870 - 61,544,577 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	61,513,870 - 61,544,993 (-)	Ensembl	panpan1.1		panPan2

GMEB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	47,173,914 - 47,198,461 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	47,175,957 - 47,196,847 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	46,372,542 - 46,398,257 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	48,142,959 - 48,171,305 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	48,144,999 - 48,336,418 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	47,157,878 - 47,186,158 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,283,374 - 47,311,121 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	48,021,124 - 48,049,104 (-)	NCBI		UU_Cfam_GSD_1.0

GMEB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,568,549 - 62,584,820 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	62,568,546 - 62,595,880 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GMEB2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	598,340 - 628,370 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	604,429 - 628,373 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	48,153,467 - 48,186,276 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gmeb2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	29,241,710 - 29,281,516 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	29,241,820 - 29,281,551 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005325331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000027751 ⟹ ENSSTOP00000017440

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936514	10,876,029 - 10,904,055 (-)	Ensembl

RefSeq Acc Id:

XM_005325331 ⟹ XP_005325388

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	195,422,396 - 195,450,389 (-)	NCBI
SpeTri2.0	NW_004936514	10,876,039 - 10,904,022 (-)	NCBI

Sequence:

show sequence

CGGGCGGGAGCGGGCTCCGTGAGCGCGGGGTCTGAGGGGCTCGTCTGGGCGCCGGAGCTACGAA
GAAGAACCTCACCCACGAGAACGCCGAGACCCTCCGGGTGGGGACGGGTTGACAGGAATGAGTC
CATGGTGGGAGCCACGTGAGTGGCCCAGCGGAGGGACTGCGCTGGCCGGCCCAGTAGTCGGCCA
GACCCACCGGCGGAGTCGAGTCCGTGGCAGTAGATGGGTCGCTAGCACCGCGTTGATGTGGACC
CAGTGGGAACTGCACTGCCAGGAGCCCCACCAAAGGGACCCAGCGGTGGGACTCTGTGGTCAGG
AACCTACCATGGGGACCCAGCAGTGGGGACTGTGTGGCCAGGAACCCACCGTGGGGACCCAGCA
GTGGGGACTGTGTGGCCAGGAACCCACCGTGGGGACCCAGCAGTGCGGACTGTGTGGCCAGGAA
CCTGCCATGGGGACCCAGCAGTGGGGACTGTGTGGCCAGGAACCTTCCAGGACCGCGCAGTGGA
AACCCCATTCATAGAGACCCAGTGGTGAGAACTGAATCAGTGTGGCTCACGGATTGGGAACCTG
GAAGAGTGACGCTGCAGTCCGGGCGTCCTCTCCTCAGAGCCATGGCAACGCCAGATGTGAGTGT
CCACATGGAAGAGGTGGTGGTTGTGACGACCCCAGACACTGCAGCCGACGGCAGTGGTGTGGAG
GAGGTGAAGACGGTGCTGGTGACCACGAACCTGGCCCCTCATGGGGGTGACCTGGCAGAAGACA
ATGTGGACACAGAAAACGCAGCTGCTGCTGCCGCCGCAGCCTTCACAGCCTCCTCGCAGCTCAA
GGAGGCCGTGTTAGTGAAGATGGCCGAAGAGGGGGAAAGCTTGGAGGCTGAGATTGTGTATCCC
ATCACCTGCGGAGACAGCAGAGCTAACCTGATTTGGAGGAAGTTCGTTTGCCCTGGCATCAATG
TGAAATGTGTTCAGTATGACGAGCATGTGATCAGCCCCAAGGAGTTTGTGCACCTGGCGGGGAA
GTCCACTCTGAAGGACTGGAAAAGAGCCATCCGGATGAATGGTATCATGCTCAGGAAGATCATG
GACTCAGGGGAGCTGGACTTCTACCAGCATGACAAGGTCTGCTCCAACACCTGCCGCAGCACAA
AGATAGACCTCTCGGGGGCCCGTGTGTCCCTGAGCAGCCCCACGGCCACAGAGTACCTCCCACT
CACACCTGCTGCAGCGGATGTGAATGGCTCTCCTGCCACCATCACCATAGAGACATGTGAGGAC
CCCAGCGACTGGACCACAGCCATTGGAGATGACACATTTGCCTTCTGGCGGGGGCTAAAGGATG
CTGGCCTGCTGGATGAGGTCATTCAAGAATTCCAGCAGGAACTGGAGGAAACTATGAAAGGCCT
GCAGCAGAGGGTACAGGACCCTCCCCTGCAGCTCCGAGATGCTGTCCTCCTCAACAACATTGTA
CAGAACTTTGGCATGCTGGACCTAGTAAAGAAGGTGCTGGCCAGCCACAAGTGTCAAATGGACC
GCTCTCGGGAGCAGTACGCCCGGGACCTGGCAGCCCTGGAGCAGCAGTGTGACGAGCATCGGCG
CCGTGCCCGGGAACTGAAGCACAAATCCCAGCACCTCAGCAATGTGCTCATGACACTCACACCT
GTGCCCCTGCCACCCCCTGCCAAGCGGCCTCGGCTTGCACGAGCCACGTCTGGACCAGCTGCTG
TGGCCTCGCAGGTGCTCACCCAGTCTGCGCAGATTGCCCTCGGCCCAGGTGTGCCTGTGCCCCA
GCTGGCCAGTGTGCCACTTGGTAAAGTGGTATCCACGCTGCCCTCGGCTGTCCTGGGCAAGGGC
TCTCCTCAGGCTCCACCAGCCAGCTCGCCAGCCTCGCCGCTGCTCGGTGGCTACACAGTCCTGG
CCTCCTCGGGCTCCAGCTTCCCCAGCACAGTGGAGATCCACCCGGACGCATCCAGCCTCACAGT
CCTAAGTACAGCAGCCATGCAGGACGGCAGCACCGTGCTGAAGGTGGTCAGTCCGCTGCAACTG
CTCACGCTTCCCAGCCTGGGCCCCACCCTGCAGAATGTGGCTCAGGCGTCACCTGCAGGCAGCA
CAATAGTGACAGTGCCCACTGCCACGGCCCCAGGGCCTGAGGAACACACAACCACCATTGAGGT
GGCTGCTGTGGCAGAGGACCATGAGCAGAAGTAGCCAGGAGCCTAGGCCTCTTGCAGGGTATGT
CCTGGGAGGGTGAGGCCCCTCAGGGCGGGTGGAGCTGGCTGCCTCTCCTCAGGCCGCTGCAGGC
AGAGGCCATGGGGCTGGCTCAGCACAGGCAGGTCTAGTGGGCTGAACCAAAGAGAGGCATCACT
AGGCAAATGAGAAGACAGATGCCAGCAACCTGGAAGATGGGTCTTCAAGTCCAAACTTCCTCCC
CTTTTCTCTTGGGAAATAGACTTTCCACCTGTTGCTTGTTGATACTGTTTACACATTGGGCCTT
GAGCAGGAGCCAGGGGAACAGTGGCCAGGAGGAGTGCATCTGGGTGCAGCCAGGTGCAGGCAGC
AGAGTCAGGGCTGCAGGTGCCTGAGACCCTGAAGGTGCTGGTAGTGCCAGAGCCCGCCAAGTCA
CTGAGGTCCTGGTGCCCACGCGTCGTCTCGGGGGACATTACTAACACATGTCTTGGGAACTGTA
CCCAAGTGTGGAAACCCATGGATCCTATGGATTTGGTTTCTTCCCACAGTTTTCTGTAGGGTTA
GTGTGGCCACGCCCCACTCCTCTGCCTGTGTGGGAATGTGCACCCTGGAGGCCAAGATGCAGGC
CCCGGGCAGCACCTGCCCCCACCCCAGGTGCTTAGATGGGGCACCCAGGCGTACCAGGCAGGGT
CAGGAGCCATTGATCACGTGCTACAGGTGTTTTTAAGTGAATTGCTGAGTAGGCTTCCAGGAAG
AATCAAATTTGTAGCATTTTCAACCAAAACAATGCTGAGTGCCTAGGCTTCCCAAGGCAGCTCT
GGAATGGGCCTGGAGCACTTGTGTATGCACCTGGCCAGGTGCTGGAGTTCCTGGGCAGTGTCCC
TCCCCAAGATGAGGCTCTTTGTGGGATTTGACAGGGGTGTTCCTTCAGACTTGGGGGTGCTGAG
ATGGCCCCTGTGTGCAGTCAGCTGTTGGGACCCCCAGAGCATAGAGCAGGCCAGTTGGGGGACA
TGGGGCCCAAGATGTTCCATGAAGGGCTGTCTGTTGACAGTTTGCAGATCAGTGTTTGGGATCT
CGAGGAAGACCAAGCAGGGGGCTGTCCTCCAGGCCAGAGCCTCTGGAGCTAGACATTTCAGGAA
GTGGGATAATCCCTGGGGCCAGTTATCCACAGACCCTTCTAGTGGTTGTTGGCCAAGAACCCCA
CAGCAAGAGAAGGCTGCAGTCCCTCTTTGCTGCTTTGAAAGGAACTAGCTGTCCCTCTCTCTGT
CCATCCATCCCACTAAGTGCCCAGACCCAACCTTTACACCTTTGTTTTGACCAGGGCCCCACGT
CAAGCTACAGTTCTGTTTCTTATTTTCTTTCTGTTACATCCTTGTTTGCTCTTAGGAATCAGCT
GGTTTTGGCGTGATGTTTATCTATTTGTGTACATACTCCTTTTTTTTAAACTCATTTTTATTTG
AGTTTCAAGTTCTGTGACATGGGGCAGCATGACCTTGTGGGCCTCAGGAGGATGCAGGTGTGGG
CATGGCCCAGCAGCTCAGGCAATGTGAGACATGGTGTCACTGGTGGGGACCTATGGGACTTCCC
TTGGCCGGCATCTGCCATGCTCTCTGCCTGCCTTTCCGGCTGTAGAGCATTTTCCCTCTGTAAG
ATTCAGGTGGGACTGTTTCAGCCCCTGCCTCTCCGTCCACGGAGGCACTGGAAGGTTCAGTTAC
CTTCAGAGCCATATACATAAGCCCCAGACCAACTTCCCTTTCTCATGGTGCCCCAGACTGCCCT
CAGCCATCTGCCACCAGCCCCTCCCACAGGAACCCATCTCACTGTGGGTGGAGGGCTTGCTCAC
CCCCCTGGCTCCTGCAGGGCCTGCTGGTTGCTTGGGGGGTGGGAGGGTGTTTGGGCCTCCCACT
GCTCCTCAAGGCTGGCCAGGGTGTATCCAGTGGCTGCCTTCAGTTTAGTTTTCTGAGGAAATGG
GACTGGATTTGGTTTCTGCAGAGGGCGTGAGCTCAGTGCATGCCCAGAGGCACCTGGGGAAGGG
CATTGCTTGAGTTTCACTTTCTATGTTTTGCAAGTATCTGCTTGGTACTTTGACATAAAATAAA
AACCTTTTTCATTAA

hide sequence

RefSeq Acc Id:

XM_021726405 ⟹ XP_021582080

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	195,422,396 - 195,442,723 (-)	NCBI
SpeTri2.0	NW_004936514	10,876,039 - 10,896,291 (-)	NCBI

Sequence:

show sequence

GCCGACGGCAGTGGTGTGGAGGAGGTGAAGACGGTGCTGGTGACCACGAACCTGGCCCCTCATG
GTGAAGATGGCCGAAGAGGGGGAAAGCTTGGAGGCTGAGATTGTGTATCCCATCACCTGCGGAG
ACAGCAGAGCTAACCTGATTTGGAGGAAGTTCGTTTGCCCTGGCATCAATGTGAAATGTGTTCA
GTATGACGAGCATGTGATCAGCCCCAAGGAGTTTGTGCACCTGGCGGGGAAGTCCACTCTGAAG
GACTGGAAAAGAGCCATCCGGATGAATGGTATCATGCTCAGGAAGATCATGGACTCAGGGGAGC
TGGACTTCTACCAGCATGACAAGGTCTGCTCCAACACCTGCCGCAGCACAAAGATAGACCTCTC
GGGGGCCCGTGTGTCCCTGAGCAGCCCCACGGCCACAGAGTACCTCCCACTCACACCTGCTGCA
GCGGATGTGAATGGCTCTCCTGCCACCATCACCATAGAGACATGTGAGGACCCCAGCGACTGGA
CCACAGCCATTGGAGATGACACATTTGCCTTCTGGCGGGGGCTAAAGGATGCTGGCCTGCTGGA
TGAGGTCATTCAAGAATTCCAGCAGGAACTGGAGGAAACTATGAAAGGCCTGCAGCAGAGGGTA
CAGGACCCTCCCCTGCAGCTCCGAGATGCTGTCCTCCTCAACAACATTGTACAGAACTTTGGCA
TGCTGGACCTAGTAAAGAAGGTGCTGGCCAGCCACAAGTGTCAAATGGACCGCTCTCGGGAGCA
GTACGCCCGGGACCTGGCAGCCCTGGAGCAGCAGTGTGACGAGCATCGGCGCCGTGCCCGGGAA
CTGAAGCACAAATCCCAGCACCTCAGCAATGTGCTCATGACACTCACACCTGTGCCCCTGCCAC
CCCCTGCCAAGCGGCCTCGGCTTGCACGAGCCACGTCTGGACCAGCTGCTGTGGCCTCGCAGGT
GCTCACCCAGTCTGCGCAGATTGCCCTCGGCCCAGGTGTGCCTGTGCCCCAGCTGGCCAGTGTG
CCACTTGGTAAAGTGGTATCCACGCTGCCCTCGGCTGTCCTGGGCAAGGGCTCTCCTCAGGCTC
CACCAGCCAGCTCGCCAGCCTCGCCGCTGCTCGGTGGCTACACAGTCCTGGCCTCCTCGGGCTC
CAGCTTCCCCAGCACAGTGGAGATCCACCCGGACGCATCCAGCCTCACAGTCCTAAGTACAGCA
GCCATGCAGGACGGCAGCACCGTGCTGAAGGTGGTCAGTCCGCTGCAACTGCTCACGCTTCCCA
GCCTGGGCCCCACCCTGCAGAATGTGGCTCAGGCGTCACCTGCAGGCAGCACAATAGTGACAGT
GCCCACTGCCACGGCCCCAGGGCCTGAGGAACACACAACCACCATTGAGGTGGCTGCTGTGGCA
GAGGACCATGAGCAGAAGTAGCCAGGAGCCTAGGCCTCTTGCAGGGTATGTCCTGGGAGGGTGA
GGCCCCTCAGGGCGGGTGGAGCTGGCTGCCTCTCCTCAGGCCGCTGCAGGCAGAGGCCATGGGG
CTGGCTCAGCACAGGCAGGTCTAGTGGGCTGAACCAAAGAGAGGCATCACTAGGCAAATGAGAA
GACAGATGCCAGCAACCTGGAAGATGGGTCTTCAAGTCCAAACTTCCTCCCCTTTTCTCTTGGG
AAATAGACTTTCCACCTGTTGCTTGTTGATACTGTTTACACATTGGGCCTTGAGCAGGAGCCAG
GGGAACAGTGGCCAGGAGGAGTGCATCTGGGTGCAGCCAGGTGCAGGCAGCAGAGTCAGGGCTG
CAGGTGCCTGAGACCCTGAAGGTGCTGGTAGTGCCAGAGCCCGCCAAGTCACTGAGGTCCTGGT
GCCCACGCGTCGTCTCGGGGGACATTACTAACACATGTCTTGGGAACTGTACCCAAGTGTGGAA
ACCCATGGATCCTATGGATTTGGTTTCTTCCCACAGTTTTCTGTAGGGTTAGTGTGGCCACGCC
CCACTCCTCTGCCTGTGTGGGAATGTGCACCCTGGAGGCCAAGATGCAGGCCCCGGGCAGCACC
TGCCCCCACCCCAGGTGCTTAGATGGGGCACCCAGGCGTACCAGGCAGGGTCAGGAGCCATTGA
TCACGTGCTACAGGTGTTTTTAAGTGAATTGCTGAGTAGGCTTCCAGGAAGAATCAAATTTGTA
GCATTTTCAACCAAAACAATGCTGAGTGCCTAGGCTTCCCAAGGCAGCTCTGGAATGGGCCTGG
AGCACTTGTGTATGCACCTGGCCAGGTGCTGGAGTTCCTGGGCAGTGTCCCTCCCCAAGATGAG
GCTCTTTGTGGGATTTGACAGGGGTGTTCCTTCAGACTTGGGGGTGCTGAGATGGCCCCTGTGT
GCAGTCAGCTGTTGGGACCCCCAGAGCATAGAGCAGGCCAGTTGGGGGACATGGGGCCCAAGAT
GTTCCATGAAGGGCTGTCTGTTGACAGTTTGCAGATCAGTGTTTGGGATCTCGAGGAAGACCAA
GCAGGGGGCTGTCCTCCAGGCCAGAGCCTCTGGAGCTAGACATTTCAGGAAGTGGGATAATCCC
TGGGGCCAGTTATCCACAGACCCTTCTAGTGGTTGTTGGCCAAGAACCCCACAGCAAGAGAAGG
CTGCAGTCCCTCTTTGCTGCTTTGAAAGGAACTAGCTGTCCCTCTCTCTGTCCATCCATCCCAC
TAAGTGCCCAGACCCAACCTTTACACCTTTGTTTTGACCAGGGCCCCACGTCAAGCTACAGTTC
TGTTTCTTATTTTCTTTCTGTTACATCCTTGTTTGCTCTTAGGAATCAGCTGGTTTTGGCGTGA
TGTTTATCTATTTGTGTACATACTCCTTTTTTTTAAACTCATTTTTATTTGAGTTTCAAGTTCT
GTGACATGGGGCAGCATGACCTTGTGGGCCTCAGGAGGATGCAGGTGTGGGCATGGCCCAGCAG
CTCAGGCAATGTGAGACATGGTGTCACTGGTGGGGACCTATGGGACTTCCCTTGGCCGGCATCT
GCCATGCTCTCTGCCTGCCTTTCCGGCTGTAGAGCATTTTCCCTCTGTAAGATTCAGGTGGGAC
TGTTTCAGCCCCTGCCTCTCCGTCCACGGAGGCACTGGAAGGTTCAGTTACCTTCAGAGCCATA
TACATAAGCCCCAGACCAACTTCCCTTTCTCATGGTGCCCCAGACTGCCCTCAGCCATCTGCCA
CCAGCCCCTCCCACAGGAACCCATCTCACTGTGGGTGGAGGGCTTGCTCACCCCCCTGGCTCCT
GCAGGGCCTGCTGGTTGCTTGGGGGGTGGGAGGGTGTTTGGGCCTCCCACTGCTCCTCAAGGCT
GGCCAGGGTGTATCCAGTGGCTGCCTTCAGTTTAGTTTTCTGAGGAAATGGGACTGGATTTGGT
TTCTGCAGAGGGCGTGAGCTCAGTGCATGCCCAGAGGCACCTGGGGAAGGGCATTGCTTGAGTT
TCACTTTCTATGTTTTGCAAGTATCTGCTTGGTACTTTGACATAAAATAAAAACCTTTTTCATT
AA

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RefSeq Acc Id:

XM_021726406 ⟹ XP_021582081

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	195,422,396 - 195,435,736 (-)	NCBI
SpeTri2.0	NW_004936514	10,876,039 - 10,889,310 (-)	NCBI

Sequence:

show sequence

CGGAGACAGCAGAGCTAACCTGATTTGGAGGAAGTTCGTTTGCCCTGGCATCAATGTGAAATGT
GTTCAGTAAGTGCACAGGGTGGAGTGGAGTGCTCATGTTAGAATGCCAGACATGAAGGAGTGAC
AACTGGGAATGCCAACGCTCAGTCCATCCTCATGGACCACTTGCAAAAATGGAGGGCAGTAGCT
GCAGTGGGAAAGCCTGCCAGACACCGCCACGTCCAGTATGACGAGCATGTGATCAGCCCCAAGG
AGTTTGTGCACCTGGCGGGGAAGTCCACTCTGAAGGACTGGAAAAGAGCCATCCGGATGAATGG
TATCATGCTCAGGAAGATCATGGACTCAGGGGAGCTGGACTTCTACCAGCATGACAAGGTCTGC
TCCAACACCTGCCGCAGCACAAAGATAGACCTCTCGGGGGCCCGTGTGTCCCTGAGCAGCCCCA
CGGCCACAGAGTACCTCCCACTCACACCTGCTGCAGCGGATGTGAATGGCTCTCCTGCCACCAT
CACCATAGAGACATGTGAGGACCCCAGCGACTGGACCACAGCCATTGGAGATGACACATTTGCC
TTCTGGCGGGGGCTAAAGGATGCTGGCCTGCTGGATGAGGTCATTCAAGAATTCCAGCAGGAAC
TGGAGGAAACTATGAAAGGCCTGCAGCAGAGGGTACAGGACCCTCCCCTGCAGCTCCGAGATGC
TGTCCTCCTCAACAACATTGTACAGAACTTTGGCATGCTGGACCTAGTAAAGAAGGTGCTGGCC
AGCCACAAGTGTCAAATGGACCGCTCTCGGGAGCAGTACGCCCGGGACCTGGCAGCCCTGGAGC
AGCAGTGTGACGAGCATCGGCGCCGTGCCCGGGAACTGAAGCACAAATCCCAGCACCTCAGCAA
TGTGCTCATGACACTCACACCTGTGCCCCTGCCACCCCCTGCCAAGCGGCCTCGGCTTGCACGA
GCCACGTCTGGACCAGCTGCTGTGGCCTCGCAGGTGCTCACCCAGTCTGCGCAGATTGCCCTCG
GCCCAGGTGTGCCTGTGCCCCAGCTGGCCAGTGTGCCACTTGGTAAAGTGGTATCCACGCTGCC
CTCGGCTGTCCTGGGCAAGGGCTCTCCTCAGGCTCCACCAGCCAGCTCGCCAGCCTCGCCGCTG
CTCGGTGGCTACACAGTCCTGGCCTCCTCGGGCTCCAGCTTCCCCAGCACAGTGGAGATCCACC
CGGACGCATCCAGCCTCACAGTCCTAAGTACAGCAGCCATGCAGGACGGCAGCACCGTGCTGAA
GGTGGTCAGTCCGCTGCAACTGCTCACGCTTCCCAGCCTGGGCCCCACCCTGCAGAATGTGGCT
CAGGCGTCACCTGCAGGCAGCACAATAGTGACAGTGCCCACTGCCACGGCCCCAGGGCCTGAGG
AACACACAACCACCATTGAGGTGGCTGCTGTGGCAGAGGACCATGAGCAGAAGTAGCCAGGAGC
CTAGGCCTCTTGCAGGGTATGTCCTGGGAGGGTGAGGCCCCTCAGGGCGGGTGGAGCTGGCTGC
CTCTCCTCAGGCCGCTGCAGGCAGAGGCCATGGGGCTGGCTCAGCACAGGCAGGTCTAGTGGGC
TGAACCAAAGAGAGGCATCACTAGGCAAATGAGAAGACAGATGCCAGCAACCTGGAAGATGGGT
CTTCAAGTCCAAACTTCCTCCCCTTTTCTCTTGGGAAATAGACTTTCCACCTGTTGCTTGTTGA
TACTGTTTACACATTGGGCCTTGAGCAGGAGCCAGGGGAACAGTGGCCAGGAGGAGTGCATCTG
GGTGCAGCCAGGTGCAGGCAGCAGAGTCAGGGCTGCAGGTGCCTGAGACCCTGAAGGTGCTGGT
AGTGCCAGAGCCCGCCAAGTCACTGAGGTCCTGGTGCCCACGCGTCGTCTCGGGGGACATTACT
AACACATGTCTTGGGAACTGTACCCAAGTGTGGAAACCCATGGATCCTATGGATTTGGTTTCTT
CCCACAGTTTTCTGTAGGGTTAGTGTGGCCACGCCCCACTCCTCTGCCTGTGTGGGAATGTGCA
CCCTGGAGGCCAAGATGCAGGCCCCGGGCAGCACCTGCCCCCACCCCAGGTGCTTAGATGGGGC
ACCCAGGCGTACCAGGCAGGGTCAGGAGCCATTGATCACGTGCTACAGGTGTTTTTAAGTGAAT
TGCTGAGTAGGCTTCCAGGAAGAATCAAATTTGTAGCATTTTCAACCAAAACAATGCTGAGTGC
CTAGGCTTCCCAAGGCAGCTCTGGAATGGGCCTGGAGCACTTGTGTATGCACCTGGCCAGGTGC
TGGAGTTCCTGGGCAGTGTCCCTCCCCAAGATGAGGCTCTTTGTGGGATTTGACAGGGGTGTTC
CTTCAGACTTGGGGGTGCTGAGATGGCCCCTGTGTGCAGTCAGCTGTTGGGACCCCCAGAGCAT
AGAGCAGGCCAGTTGGGGGACATGGGGCCCAAGATGTTCCATGAAGGGCTGTCTGTTGACAGTT
TGCAGATCAGTGTTTGGGATCTCGAGGAAGACCAAGCAGGGGGCTGTCCTCCAGGCCAGAGCCT
CTGGAGCTAGACATTTCAGGAAGTGGGATAATCCCTGGGGCCAGTTATCCACAGACCCTTCTAG
TGGTTGTTGGCCAAGAACCCCACAGCAAGAGAAGGCTGCAGTCCCTCTTTGCTGCTTTGAAAGG
AACTAGCTGTCCCTCTCTCTGTCCATCCATCCCACTAAGTGCCCAGACCCAACCTTTACACCTT
TGTTTTGACCAGGGCCCCACGTCAAGCTACAGTTCTGTTTCTTATTTTCTTTCTGTTACATCCT
TGTTTGCTCTTAGGAATCAGCTGGTTTTGGCGTGATGTTTATCTATTTGTGTACATACTCCTTT
TTTTTAAACTCATTTTTATTTGAGTTTCAAGTTCTGTGACATGGGGCAGCATGACCTTGTGGGC
CTCAGGAGGATGCAGGTGTGGGCATGGCCCAGCAGCTCAGGCAATGTGAGACATGGTGTCACTG
GTGGGGACCTATGGGACTTCCCTTGGCCGGCATCTGCCATGCTCTCTGCCTGCCTTTCCGGCTG
TAGAGCATTTTCCCTCTGTAAGATTCAGGTGGGACTGTTTCAGCCCCTGCCTCTCCGTCCACGG
AGGCACTGGAAGGTTCAGTTACCTTCAGAGCCATATACATAAGCCCCAGACCAACTTCCCTTTC
TCATGGTGCCCCAGACTGCCCTCAGCCATCTGCCACCAGCCCCTCCCACAGGAACCCATCTCAC
TGTGGGTGGAGGGCTTGCTCACCCCCCTGGCTCCTGCAGGGCCTGCTGGTTGCTTGGGGGGTGG
GAGGGTGTTTGGGCCTCCCACTGCTCCTCAAGGCTGGCCAGGGTGTATCCAGTGGCTGCCTTCA
GTTTAGTTTTCTGAGGAAATGGGACTGGATTTGGTTTCTGCAGAGGGCGTGAGCTCAGTGCATG
CCCAGAGGCACCTGGGGAAGGGCATTGCTTGAGTTTCACTTTCTATGTTTTGCAAGTATCTGCT
TGGTACTTTGACATAAAATAAAAACCTTTTTCATTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005325388	(Get FASTA)	NCBI Sequence Viewer
	XP_021582080	(Get FASTA)	NCBI Sequence Viewer
	XP_021582081	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017440.1
GenBank Protein	KAG3263683	(Get FASTA)	NCBI Sequence Viewer
	KAG3263684	(Get FASTA)	NCBI Sequence Viewer
	KAG3263685	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005325388 ⟸ XM_005325331
- Peptide Label:	isoform X1
- UniProtKB:	I3MZ94 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATPDVSVHMEEVVVVTTPDTAADGSGVEEVKTVLVTTNLAPHGGDLAEDNVDTENAAAAAAAA FTASSQLKEAVLVKMAEEGESLEAEIVYPITCGDSRANLIWRKFVCPGINVKCVQYDEHVISPK EFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGELDFYQHDKVCSNTCRSTKIDLSGARVSLSSP TATEYLPLTPAAADVNGSPATITIETCEDPSDWTTAIGDDTFAFWRGLKDAGLLDEVIQEFQQE LEETMKGLQQRVQDPPLQLRDAVLLNNIVQNFGMLDLVKKVLASHKCQMDRSREQYARDLAALE QQCDEHRRRARELKHKSQHLSNVLMTLTPVPLPPPAKRPRLARATSGPAAVASQVLTQSAQIAL GPGVPVPQLASVPLGKVVSTLPSAVLGKGSPQAPPASSPASPLLGGYTVLASSGSSFPSTVEIH PDASSLTVLSTAAMQDGSTVLKVVSPLQLLTLPSLGPTLQNVAQASPAGSTIVTVPTATAPGPE EHTTTIEVAAVAEDHEQK hide sequence

RefSeq Acc Id:

XP_021582080 ⟸ XM_021726405

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVKMAEEGESLEAEIVYPITCGDSRANLIWRKFVCPGINVKCVQYDEHVISPKEFVHLAGKSTL
KDWKRAIRMNGIMLRKIMDSGELDFYQHDKVCSNTCRSTKIDLSGARVSLSSPTATEYLPLTPA
AADVNGSPATITIETCEDPSDWTTAIGDDTFAFWRGLKDAGLLDEVIQEFQQELEETMKGLQQR
VQDPPLQLRDAVLLNNIVQNFGMLDLVKKVLASHKCQMDRSREQYARDLAALEQQCDEHRRRAR
ELKHKSQHLSNVLMTLTPVPLPPPAKRPRLARATSGPAAVASQVLTQSAQIALGPGVPVPQLAS
VPLGKVVSTLPSAVLGKGSPQAPPASSPASPLLGGYTVLASSGSSFPSTVEIHPDASSLTVLST
AAMQDGSTVLKVVSPLQLLTLPSLGPTLQNVAQASPAGSTIVTVPTATAPGPEEHTTTIEVAAV
AEDHEQK

hide sequence

RefSeq Acc Id:

XP_021582081 ⟸ XM_021726406

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDHLQKWRAVAAVGKPARHRHVQYDEHVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSG
ELDFYQHDKVCSNTCRSTKIDLSGARVSLSSPTATEYLPLTPAAADVNGSPATITIETCEDPSD
WTTAIGDDTFAFWRGLKDAGLLDEVIQEFQQELEETMKGLQQRVQDPPLQLRDAVLLNNIVQNF
GMLDLVKKVLASHKCQMDRSREQYARDLAALEQQCDEHRRRARELKHKSQHLSNVLMTLTPVPL
PPPAKRPRLARATSGPAAVASQVLTQSAQIALGPGVPVPQLASVPLGKVVSTLPSAVLGKGSPQ
APPASSPASPLLGGYTVLASSGSSFPSTVEIHPDASSLTVLSTAAMQDGSTVLKVVSPLQLLTL
PSLGPTLQNVAQASPAGSTIVTVPTATAPGPEEHTTTIEVAAVAEDHEQK

hide sequence

Ensembl Acc Id:

ENSSTOP00000017440 ⟸ ENSSTOT00000027751

Protein Domains

SAND

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000023031	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000027751.2	UniProtKB/TrEMBL
Gene3D-CATH	3.10.390.10	UniProtKB/TrEMBL
InterPro	SAND-like_dom_sf	UniProtKB/TrEMBL
	SAND_dom	UniProtKB/TrEMBL
NCBI Gene	Gmeb2	ENTREZGENE
PANTHER	GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN 2	UniProtKB/TrEMBL
	PTHR10417	UniProtKB/TrEMBL
Pfam	SAND	UniProtKB/TrEMBL
PROSITE	SAND	UniProtKB/TrEMBL
SMART	SAND	UniProtKB/TrEMBL
Superfamily-SCOP	SSF63763	UniProtKB/TrEMBL
UniProt	I3MZ94	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar