Cpeb3 (cytoplasmic polyadenylation element binding protein 3) - Rat Genome Database

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Gene: Cpeb3 (cytoplasmic polyadenylation element binding protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Cpeb3
Name: cytoplasmic polyadenylation element binding protein 3
RGD ID: 12727250
Description: ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); RNA stem-loop binding (ortholog); INVOLVED IN long-term memory (ortholog); negative regulation of cytoplasmic translational elongation (ortholog); negative regulation of translation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN apical dendrite (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic polyadenylation element-binding protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721340,834,279 - 40,983,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366012,470,036 - 2,610,942 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366012,470,021 - 2,616,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cpeb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721340,834,279 - 40,983,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366012,470,036 - 2,610,942 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366012,470,021 - 2,616,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381092,046,692 - 92,291,233 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1092,046,692 - 92,291,078 (-)EnsemblGRCh38hg38GRCh38
GRCh371093,806,449 - 94,050,835 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361093,798,379 - 94,040,824 (-)NCBINCBI36Build 36hg18NCBI36
Build 341093,798,378 - 94,040,824NCBI
Celera1087,552,931 - 87,795,403 (-)NCBICelera
Cytogenetic Map10q23.32NCBI
HuRef1087,437,158 - 87,679,427 (-)NCBIHuRef
CHM1_11094,090,164 - 94,332,641 (-)NCBICHM1_1
T2T-CHM13v2.01092,929,099 - 93,173,600 (-)NCBIT2T-CHM13v2.0
Cpeb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391936,996,742 - 37,185,018 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1936,998,691 - 37,186,000 (-)EnsemblGRCm39 Ensembl
GRCm381937,019,341 - 37,207,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1937,021,291 - 37,208,601 (-)EnsemblGRCm38mm10GRCm38
MGSCv371937,095,781 - 37,281,783 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361937,086,435 - 37,272,437 (-)NCBIMGSCv36mm8
Celera1937,797,394 - 37,982,920 (-)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.08NCBI
Cpeb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,161,690 - 244,343,765 (-)NCBIGRCr8
mRatBN7.21234,749,138 - 234,931,219 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,751,733 - 234,931,560 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01255,660,165 - 255,842,671 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1255,665,238 - 255,815,733 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01263,136,022 - 263,287,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41241,298,277 - 241,444,908 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1231,841,304 - 232,022,582 (-)NCBICelera
Cytogenetic Map1q53NCBI
Cpeb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554251,057,575 - 1,224,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554251,032,446 - 1,224,300 (+)NCBIChiLan1.0ChiLan1.0
CPEB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28104,085,024 - 104,329,699 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110104,090,340 - 104,334,928 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01088,794,186 - 89,038,808 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11092,314,573 - 92,505,160 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1092,320,240 - 92,506,089 (-)Ensemblpanpan1.1panPan2
CPEB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1286,523,894 - 6,724,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl286,529,212 - 6,723,454 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha286,699,976 - 6,899,667 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0286,778,232 - 6,978,042 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl286,782,197 - 6,944,731 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1286,504,095 - 6,703,882 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0286,537,767 - 6,737,510 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0286,702,474 - 6,902,192 (-)NCBIUU_Cfam_GSD_1.0
CPEB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14103,675,175 - 103,871,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114103,675,164 - 103,871,245 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214113,188,346 - 113,384,008 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1985,325,768 - 85,569,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl985,331,466 - 85,525,688 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604846,060,930 - 46,303,193 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247373,355,360 - 3,542,731 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247373,352,064 - 3,570,317 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021731947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000024372   ⟹   ENSSTOP00000020341
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366012,470,036 - 2,610,942 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000039891   ⟹   ENSSTOP00000028391
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366012,470,036 - 2,610,942 (+)Ensembl
RefSeq Acc Id: XM_021731947   ⟹   XP_021587622
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721340,834,279 - 40,983,848 (+)NCBI
SpeTri2.0NW_0049366012,470,021 - 2,616,451 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021587622 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020341.2
  ENSSTOP00000028391.1
RefSeq Acc Id: XP_021587622   ⟸   XM_021731947
- UniProtKB: I3N7J5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000020341   ⟸   ENSSTOT00000024372
Ensembl Acc Id: ENSSTOP00000028391   ⟸   ENSSTOT00000039891
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028061 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024372.2 UniProtKB/TrEMBL
  ENSSTOT00000039891.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/TrEMBL
InterPro CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Cpeb3 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 3 UniProtKB/TrEMBL
  PTHR12566 UniProtKB/TrEMBL
Pfam CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A287D475_ICTTR UniProtKB/TrEMBL
  I3N7J5 ENTREZGENE, UniProtKB/TrEMBL