LOC101966807 (eukaryotic translation initiation factor 3 subunit C) - Rat Genome Database

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Gene: LOC101966807 (eukaryotic translation initiation factor 3 subunit C) Ictidomys tridecemlineatus
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Symbol: LOC101966807
Name: eukaryotic translation initiation factor 3 subunit C
RGD ID: 12726576
Description: ENCODES a protein that exhibits RNA binding (inferred); translation initiation factor activity (inferred); translation initiation factor binding (inferred); INVOLVED IN cytoplasmic translational initiation (inferred); formation of cytoplasmic translation initiation complex (inferred); translation (inferred); FOUND IN cytoplasm (inferred); eukaryotic 43S preinitiation complex (inferred); eukaryotic 48S preinitiation complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Eif3c; eukaryotic translation initiation factor 3 subunit C, transcript variant X1; eukaryotic translation initiation factor 3 subunit C, transcript variant X2
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,825,009 - 123,845,743 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650111,922,877 - 11,943,544 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC101966807Squirrelcytoplasmic translational initiation involved_inIEAUniRule:UR000106250150520179 UniProtGO_REF:0000104
LOC101966807Squirrelformation of cytoplasmic translation initiation complex involved_inIEAUniRule:UR000106250150520179 UniProtGO_REF:0000104
LOC101966807Squirreltranslation involved_inIEAUniProtKB-KW:KW-0648150520179 UniProtGO_REF:0000043
LOC101966807Squirreltranslational initiation involved_inIEAUniProtKB-KW:KW-0396150520179 UniProtGO_REF:0000043
LOC101966807Squirreltranslational initiation involved_inIEAUniProtKB:Q8R1B4|ensembl:ENSMUSP00000032992150520179 EnsemblGO_REF:0000107
LOC101966807Squirreltranslational initiation involved_inIEAInterPro:IPR008905|InterPro:IPR027516150520179 InterProGO_REF:0000002
LOC101966807Squirreltranslational initiation involved_inIEAPANTHER:PTN000358569150520179 TreeGrafterGO_REF:0000118

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC101966807Squirrelcytoplasm located_inIEAUniRule:UR000106250150520179 UniProtGO_REF:0000104
LOC101966807Squirrelcytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
LOC101966807Squirrelcytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
LOC101966807Squirreleukaryotic 43S preinitiation complex part_ofIEAUniRule:UR000106250150520179 UniProtGO_REF:0000104
LOC101966807Squirreleukaryotic 48S preinitiation complex part_ofIEAUniRule:UR000106250150520179 UniProtGO_REF:0000104
LOC101966807Squirreleukaryotic translation initiation factor 3 complex part_ofIEAUniRule:UR000106250150520179 UniProtGO_REF:0000104
LOC101966807Squirreleukaryotic translation initiation factor 3 complex part_ofIEAPANTHER:PTN000358569150520179 TreeGrafterGO_REF:0000118
LOC101966807Squirreleukaryotic translation initiation factor 3 complex part_ofIEAUniProtKB:Q8R1B4|ensembl:ENSMUSP00000032992150520179 EnsemblGO_REF:0000107
LOC101966807Squirreleukaryotic translation initiation factor 3 complex part_ofIEAInterPro:IPR008905|InterPro:IPR027516150520179 InterProGO_REF:0000002
LOC101966807Squirreleukaryotic translation initiation factor 3 complex, eIF3m part_ofIEAUniProtKB:Q8R1B4|ensembl:ENSMUSP00000032992150520179 EnsemblGO_REF:0000107
1 to 10 of 10 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC101966807SquirrelRNA binding enablesIEAInterPro:IPR027516150520179 InterProGO_REF:0000002
LOC101966807Squirreltranslation initiation factor activity enablesIEAUniProtKB:Q8R1B4|ensembl:ENSMUSP00000032992150520179 EnsemblGO_REF:0000107
LOC101966807Squirreltranslation initiation factor activity enablesIEAPANTHER:PTN000358569150520179 TreeGrafterGO_REF:0000118
LOC101966807Squirreltranslation initiation factor activity enablesIEAInterPro:IPR008905|InterPro:IPR027516150520179 InterProGO_REF:0000002
LOC101966807Squirreltranslation initiation factor activity enablesIEAUniProtKB-KW:KW-0396150520179 UniProtGO_REF:0000043
LOC101966807Squirreltranslation initiation factor activity enablesIEAUniRule:UR000106250150520179 UniProtGO_REF:0000104
LOC101966807Squirreltranslation initiation factor binding enablesIEAInterPro:IPR008905|InterPro:IPR027516150520179 InterProGO_REF:0000002
LOC101966807Squirreltranslation initiation factor binding enablesIEAPANTHER:PTN000358569150520179 TreeGrafterGO_REF:0000118

PMID:22301074   PMID:30032202  



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RefSeq Transcripts XM_005323805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005323805   ⟹   XP_005323862
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344123,825,014 - 123,845,743 (-)NCBI
SpeTri2.0NW_00493650111,922,877 - 11,943,544 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725485   ⟹   XP_021581160
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344123,825,009 - 123,845,743 (-)NCBI
SpeTri2.0NW_00493650111,922,877 - 11,943,544 (-)NCBI
Sequence:
Protein RefSeqs XP_005323862 (Get FASTA)   NCBI Sequence Viewer  
  XP_021581160 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015227.1
  ENSSTOP00000026061.1
GenBank Protein KAG3259565 (Get FASTA)   NCBI Sequence Viewer  
  KAG3259566 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323862   ⟸   XM_005323805
- Peptide Label: isoform X1
- UniProtKB: I3MSY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581160   ⟸   XM_021725485
- Peptide Label: isoform X2
- Sequence:
PCI



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000021278 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028900.2 UniProtKB/TrEMBL
  ENSSTOT00000038831.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro EIF3C UniProtKB/TrEMBL
  EIF3C_N_dom UniProtKB/TrEMBL
  PCI_dom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC101966807 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C-RELATED UniProtKB/TrEMBL
  PTHR13937 UniProtKB/TrEMBL
Pfam eIF-3c_N UniProtKB/TrEMBL
  PCI UniProtKB/TrEMBL
PROSITE PCI UniProtKB/TrEMBL
SMART PINT UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt I3MSY2 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows