LOC101960640 (H-2 class I histocompatibility antigen, Q7 alpha chain-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC101960640 (H-2 class I histocompatibility antigen, Q7 alpha chain-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101960640
Name: H-2 class I histocompatibility antigen, Q7 alpha chain-like
RGD ID: 12721152
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); immune response (inferred); FOUND IN external side of plasma membrane (inferred); extracellular space (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HLA class I histocompatibility antigen, B-40 alpha chain-like
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,832,725 - 33,841,223 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936837197,982 - 206,664 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005341020   ⟹   XP_005341077
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,832,725 - 33,841,223 (+)NCBI
SpeTri2.0NW_004936837197,982 - 206,664 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341077 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000024047.1
  ENSSTOP00000024895.1
GenBank Protein KAG3288983 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005341077   ⟸   XM_005341020
- UniProtKB: A0A287CU89 (UniProtKB/TrEMBL),   A0A287CRZ2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000034348 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000032586.1 UniProtKB/TrEMBL
  ENSSTOT00000035940.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
NCBI Gene LOC101960640 ENTREZGENE
PANTHER HISTOCOMPATIBILITY 2, T REGION LOCUS 24 UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A287CRZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CU89 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101960640  H-2 class I histocompatibility antigen, Q7 alpha chain-like  LOC101960640  HLA class I histocompatibility antigen, B-40 alpha chain-like  Symbol and/or name change 5135510 APPROVED