Rhobtb3 (Rho related BTB domain containing 3)

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Gene: Rhobtb3 (Rho related BTB domain containing 3) Ictidomys tridecemlineatus

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Symbol:

Rhobtb3

Name:

Rho related BTB domain containing 3

RGD ID:

12692428

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); GTP binding (inferred); INVOLVED IN male gonad development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Rho related BTB domain containing 3, transcript variant X1; Rho related BTB domain containing 3, transcript variant X2; rho-related BTB domain-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	169,374,619 - 169,432,780 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	7,559,335 - 7,617,786 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	7,562,054 - 7,618,380 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

male gonad development (IEA,ISO)

retrograde transport, endosome to Golgi (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

GTP binding (IEA)

GTPase activity (IEA)

protein binding (ISO)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Rhobtb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	169,374,619 - 169,432,780 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	7,559,335 - 7,617,786 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	7,562,054 - 7,618,380 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RHOBTB3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	95,717,624 - 95,796,361 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	95,713,522 - 95,824,383 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	95,067,040 - 95,132,065 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	95,092,606 - 95,157,827 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	95,092,798 - 95,156,560	NCBI
Celera	5	90,945,592 - 91,010,810 (+)	NCBI		Celera
Cytogenetic Map	5	q15	NCBI
HuRef	5	90,257,253 - 90,322,380 (+)	NCBI		HuRef
CHM1_1	5	94,499,513 - 94,564,723 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	96,232,572 - 96,297,590 (+)	NCBI		T2T-CHM13v2.0

Rhobtb3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	76,017,656 - 76,092,054 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	76,017,656 - 76,092,044 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	75,869,537 - 75,943,824 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	75,869,537 - 75,943,925 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	76,006,985 - 76,081,272 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	76,335,539 - 76,409,826 (-)	NCBI		MGSCv36	mm8
Celera	13	78,189,914 - 78,265,316 (-)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	40.95	NCBI

Rhobtb3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	7,094,972 - 7,201,507 (-)	NCBI		GRCr8
mRatBN7.2	2	5,363,388 - 5,419,164 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	5,363,388 - 5,419,041 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	12,470,299 - 12,525,964 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	10,569,530 - 10,625,193 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	5,205,925 - 5,261,578 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	2,627,655 - 2,683,305 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	2,627,393 - 2,683,116 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	2,626,102 - 2,681,752 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	2,911,820 - 2,967,473 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	2,933,865 - 3,007,464 (-)	NCBI
Celera	2	1,833,192 - 1,888,641 (-)	NCBI		Celera
Cytogenetic Map	2	q11	NCBI

Rhobtb3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955418	16,772,363 - 16,839,347 (-)	NCBI	ChiLan1.0	ChiLan1.0

RHOBTB3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	19,582,719 - 19,648,269 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	17,736,325 - 17,801,657 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	19,552,740 - 19,618,055 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	19,698,304 - 19,763,363 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	19,698,304 - 19,763,363 (-)	Ensembl	panpan1.1		panPan2

RHOBTB3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	13,823,607 - 13,879,663 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	13,825,040 - 13,877,456 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	15,161,683 - 15,216,345 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	13,702,408 - 13,757,171 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	13,702,203 - 13,757,142 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	13,665,317 - 13,719,938 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	13,662,275 - 13,717,986 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	13,862,251 - 13,916,923 (-)	NCBI		UU_Cfam_GSD_1.0

RHOBTB3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	102,334,741 - 102,394,882 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	102,334,747 - 102,395,134 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	106,219,692 - 106,280,134 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RHOBTB3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	89,605,801 - 89,670,433 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	89,606,204 - 89,670,669 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	38,251,332 - 38,316,159 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rhobtb3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624743	14,361,573 - 14,424,063 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013359012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040271939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000016558 ⟹ ENSSTOP00000014818

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936523	7,559,335 - 7,617,786 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000039074 ⟹ ENSSTOP00000032419

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936523	7,600,102 - 7,617,363 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000041947 ⟹ ENSSTOP00000028751

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936523	7,562,806 - 7,617,363 (-)	Ensembl

RefSeq Acc Id:

XM_005326149 ⟹ XP_005326206

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	169,374,619 - 169,432,762 (-)	NCBI
SpeTri2.0	NW_004936523	7,562,054 - 7,618,372 (-)	NCBI

Sequence:

show sequence

TTGGTGTGTGAACAAAGAACCCTTTTTCGCAGCAGCAGCATGAATGTTGCCTTTATTTTTGTTC
TCACAAGTATGATTTTAGAAAACAGCTGTAGCGCATGTTGACAAATGACAAAGCGGCAGACGTG
GTAAAACACTTTCCGCCAAGGCCAAAGCGTGGGGGGGCGGGATTGCTGGAACGGCAAACTGGCT
GGAGTCCCTAGTTTCGCTAACCTCTTTTTTTTTCCCAGTCCGGAGTGAGAGGGGGCCTCCTCGC
CCCACCCCCTTTCCTGGCTCTGGTTACAGCCTTTCGAGTTGAGCAAACTTGCTGCTGGCGGATT
GGCGGCCGGGAGCTCTCCGACTCAGGCGTTGTATTTATTAATTTATATTCCACGGCGCCCCGCG
CGGGCCGCTCCTTTGTATCCGGCCGCCACCGCCCGGGTCCAAGGCCTCAGCGGGCAGCGCGTCC
CCCACGTCCACCCGACTCCCACGGCCGGCACGTGCTGGGCCCAGCCGGCCGAGGGGGCGGAGGC
CCTTTTTTTTTTTTTTCTACCCCCTCTTTGCCAGGAGGAGGAGGAGCAGCAGCAAAAGCAGCAG
CAGCAGTAGGAGGCGACAGCTGCCCCGCCAGGGAGGCGCGGCGGAACACGGGCTGCGGTCAGCT
GAATCCTCTCGGGGCTGCAGACCTGCCCCGCGCTCGGCGACTCACTGCGGCGGCGGCCGCCGGC
GATGTTCCCCAGCACTTCCTGACTGGCACGGTGCACTCGGCTGCGCTCACACGCCCCCAGCCCT
GGGGCCCCCGGCTCGCTCGCTAGCTGGCTGAGTGGCTCACGCGGCCCCGCTCTGCGTCGGCCGC
GCAGTGGTGGAGGCGCGCCAGGGGGTCGCGGCTGGGGATGAGCGGCTTGCGGGTATACACGCCA
CCGACTGGCCCCGAGAGGCCGTGAGGAGCTGGTTTTCTCCGAATCGCCGCCCTGCCCTTGAATT
TGAGATCATGTCCATTCACATCGTGGCGCTGGGGAACGAAGGCGACGCGTTCCACCAGGACAAT
CGGCCGTCGGGGCTCATCCGCACTTACCTGGGGAGAAGCCCTCTGGTCTCAGGGGACGAAAGCA
GCTTGTTGCTGAACGCGACCAGCACGGTCGCGCGTCCAGTGTTCACGGAGTATCAGGCCAGTGC
GTTCGGGAACGTCAAGCTCGTGGTTCACGACTGTCCCGTGTGGGACATTTTTGACAGTGATTGG
TACACTTCTCGAAACCTAATTGGGAGTGCTGACATCATTGTGATCAAATACAACGTTAATGACA
AGTTTTCATTCCATGAAGTAAAGGACAATTATATTCCAGTGATAAAAAGAGCATTAAATTCTGT
TCCAGTAATCATTGCTGCTGTTGGTACCAGACAAAATGAAGAATTGCCTTGCACCTGCCCACTG
TGCACCTCAGACAGAGGGAGCTGTGTCAGTACAACAGAAGGGATCCACCTTGCTAAAGAGCTGG
GAGCTACCTATCTTGAACTACATAGCCTTGATGACTTCTACATAGGGAAGTATTTTGGAGGAGT
GTTGGAATATTTCATGATTCAAGCCTTGAATCAGAAGACAAGTGAAAAAATGAAGAAAAGAAAA
ATGAACGGCTCATTTCATGGAATTAGACCACCCCAGCTTGAACAACCAGAAAAAATGCCTGTTT
TAAAGGCTGAAGCATCGCATTATAACTCTGACTTAAATAACTTGCTGTTGTGCTGCCAATGTGT
GGACGTGGTGTTTTACCACCCAGATTTAAAGGAGGTCATAGAGGCCCACAAGATCGTTCTCTGT
GCAGTAAGCCATGTTTTCATGCTGCTTTTCAATGTGAAGAGTCCCACCGAAATTCAAGATTCCA
GTATCATCCGAACTACCCAGGATCTCTTTGCTATAAACAGAGATACCACCTTTCCAGGTGCTAG
CCAGGAATCTTCTGGCAACCCACCATTGCGAGTCATTGTTAAAGACGCCCTCTTCTGTTCTTGT
TTATCAGACATTCTGCGCTTCATTTATTCAGGTGCTTTTCAGTGGGAAGAATTGGAAGAAGATA
TCAGGAAGAAGTTGAAAGATTCTGGGGATGTTTCTAATGTGATTGAGAAAGTTAAATGCATTTT
AAAAACACCGGGAAAGATTAATTGTCTAAGGAATTGCAAAACCTACCAAGCCAGAAAACCTCTG
TGGTTTTATAACACTTCCCTCAAGTTTTTCCTTAATAAACCGATGCTTGCTGATGTTGTCTTTG
AAATACAAGGTACAACAGTGCCAGCCCATAGGGCCATCCTGGTGGCCCGTTGTGAAGTGATGGC
GGCCATGTTCAATGGTAATTACATGGAAGCAAAGAGTGTCCTGATTCCAGTTTATGGTGTTTCC
AAAGAGACTTTCTTGTCATTTTTAGAATACCTATATACTGACTCCTGTTGCCCAGCTGGCATTT
TCCAGGCCATGTGTCTCCTGATCTGTGCTGAGATGTACCAAGTCTCCAGGCTGCAGCACATCTG
TGAGCTGTTCATCATCACACAGCTACAGAGCATGCCAAGCAGGGAATTGGCCTCCATGAATCTC
GATATAGTCGATCTGCTCAAAAAGGCTAAGTTCCACCACTCTGATTGCCTTTCAACCTGGCTGC
TTCATTTCATTGCGACTAACTACCTCATCTTCAGTCAAAAGCCTGAATTTCAGGATCTTTCAGT
GGAAGAACGCAGTTTTGTTGAAAAGCACAGATGGCCATCAAATATGTACTTGAAGCAACTTGCA
GAATACAGGAAGTATATTCACTCCCGGAAATGCCGTTGCTTAGTAATGTAACCTGGAGCTTTTA
TATAAGTACACTTTTTTATTATTATGGAGAATGGGTTGCAGTGAAACTCGTATGACTGAAACCA
ATGTGGGCGTTAAAACAAAGATTATCATACAGTTTAATGTGTTTATTAGTTCTCCATGAAAAAA
AAACTATTGTGATCTTAAAAGGGAACAAACTATACTACCGACTAAAACAGGCTTCACCCTAAAA
CATAAAGCTGTTGTACAGCTGTGTTTCCCCTATAAGATGTCCTGTTGCTTTAGTGATATTAAGA
ACCCTCCCTGATAAGAAATGTTTAAATTTTAAAAAATCATTTAGGATTAATATAGAAATTTCAT
CATGTCTGATTAATTATTAAAATACAGGGTTTTCAAATACCCAGTGTAGTTATTTCTCCATGAG
AAATATAGGGGAAGACGAAACAGTTCAAGTTGAGATATTTGGAAAGTGATGGGCCACTTGGTTC
CAAAGCAGTGACAGTGTTTGAATCAACATCATGAAAAAAAAAATTCTTTTATCTGGACAATCCA
CCTGAATCACCTAGTGTCCTCCCTGGGATTTTGATTAGGCAGGAAACTGAACCAGGGTCAGCTT
TGTCTGTGGGTGACCTTCAGTCACAAAGGTTTCCCACTTAGAAGGGCAGGGCATTTTTTTAGTG
TTGTGCTGTTGCAGTCACAAAATTCTTAATAATGATTGAAGAAGGGCCCTGTGTTTTTACCTGG
CACAGTGTCCCCTAAATTATGGATCTTTCCTGACA

hide sequence

RefSeq Acc Id:

XM_013359012 ⟹ XP_013214466

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	169,374,619 - 169,432,773 (-)	NCBI
SpeTri2.0	NW_004936523	7,562,054 - 7,618,380 (-)	NCBI

Sequence:

show sequence

CAAAGTAATTGGTGTGTGAACAAAGAACCCTTTTTCGCAGCAGCAGCATGAATGTTGCCTTTAT
TTTTGTTCTCACAAGTATGATTTTAGAAAACAGCTGTAGCGCATGTTGACAAATGACAAAGCGG
CAGACGTGGTAAAACACTTTCCGCCAAGGCCAAAGCGTGGGGGGGCGGGATTGCTGGAACGGCA
AACTGGCTGGAGTCCCTAGTTTCGCTAACCTCTTTTTTTTTCCCAGTCCGGAGTGAGAGGGGGC
CTCCTCGCCCCACCCCCTTTCCTGGCTCTGGTTACAGCCTTTCGAGTTGAGCAAACTTGCTGCT
GGCGGATTGGCGGCCGGGAGCTCTCCGACTCAGGCGTTGTATTTATTAATTTATATTCCACGGC
GCCCCGCGCGGGCCGCTCCTTTGTATCCGGCCGCCACCGCCCGGGTCCAAGGCCTCAGCGGGCA
GCGCGTCCCCCACGTCCACCCGACTCCCACGGCCGGCACGTGCTGGGCCCAGCCGGCCGAGGGG
GCGGAGGCCCTTTTTTTTTTTTTTCTACCCCCTCTTTGCCAGGAGGAGGAGGAGCAGCAGCAAA
AGCAGCAGCAGCAGTAGGAGGCGACAGCTGCCCCGCCAGGGAGGCGCGGCGGAACACGGGCTGC
GGTCAGCTGAATCCTCTCGGGGCTGCAGACCTGCCCCGCGCTCGGCGACTCACTGCGGCGGCGG
CCGCCGGCGATGTTCCCCAGCACTTCCTGACTGGCACGGTGCACTCGGCTGCGCTCACACGCCC
CCAGCCCTGGGGCCCCCGGCTCGCTCGCTAGCTGGCTGAGTGGCTCACGCGGCCCCGCTCTGCG
TCGGCCGCGCAGTGGTGGAGGCGCGCCAGGGGGTCGCGGCTGGGGATGAGCGGCTTGCGGGTAT
ACACGCCACCGACTGGCCCCGAGAGGCCGTGAGGAGCTGGTTTTCTCCGAATCGCCGCCCTGCC
CTTGAATTTGAGATCATGTCCATTCACATCGTGGCGCTGGGGAACGAAGGCGACGCGTTCCACC
AGGACAATCGGCCGTCGGGGCTCATCCGCACTTACCTGGGGAGAAGCCCTCTGGTCTCAGGGGA
CGAAAGCAGCTTGTTGCTGAACGCGACCAGCACGGTCGCGCGTCCAGTGTTCACGGAGTATCAG
GCCAGTGCGTTCGGGAACGTCAAGCTCGTGGTTCACGACTGTCCCGTGTGGGACATTTTTGACA
GTGATTGGTACACTTCTCGAAACCTAATTGGGAGTGCTGACATCATTGTGATCAAATACAACGT
TAATGACAAGTTTTCATTCCATGAAGTAAAGGACAATTATATTCCAGTGATAAAAAGAGCATTA
AATTCTGTTCCAGTAATCATTGCTGCTGTTGGTACCAGACAAAATGAATTGCCTTGCACCTGCC
CACTGTGCACCTCAGACAGAGGGAGCTGTGTCAGTACAACAGAAGGGATCCACCTTGCTAAAGA
GCTGGGAGCTACCTATCTTGAACTACATAGCCTTGATGACTTCTACATAGGGAAGTATTTTGGA
GGAGTGTTGGAATATTTCATGATTCAAGCCTTGAATCAGAAGACAAGTGAAAAAATGAAGAAAA
GAAAAATGAACGGCTCATTTCATGGAATTAGACCACCCCAGCTTGAACAACCAGAAAAAATGCC
TGTTTTAAAGGCTGAAGCATCGCATTATAACTCTGACTTAAATAACTTGCTGTTGTGCTGCCAA
TGTGTGGACGTGGTGTTTTACCACCCAGATTTAAAGGAGGTCATAGAGGCCCACAAGATCGTTC
TCTGTGCAGTAAGCCATGTTTTCATGCTGCTTTTCAATGTGAAGAGTCCCACCGAAATTCAAGA
TTCCAGTATCATCCGAACTACCCAGGATCTCTTTGCTATAAACAGAGATACCACCTTTCCAGGT
GCTAGCCAGGAATCTTCTGGCAACCCACCATTGCGAGTCATTGTTAAAGACGCCCTCTTCTGTT
CTTGTTTATCAGACATTCTGCGCTTCATTTATTCAGGTGCTTTTCAGTGGGAAGAATTGGAAGA
AGATATCAGGAAGAAGTTGAAAGATTCTGGGGATGTTTCTAATGTGATTGAGAAAGTTAAATGC
ATTTTAAAAACACCGGGAAAGATTAATTGTCTAAGGAATTGCAAAACCTACCAAGCCAGAAAAC
CTCTGTGGTTTTATAACACTTCCCTCAAGTTTTTCCTTAATAAACCGATGCTTGCTGATGTTGT
CTTTGAAATACAAGGTACAACAGTGCCAGCCCATAGGGCCATCCTGGTGGCCCGTTGTGAAGTG
ATGGCGGCCATGTTCAATGGTAATTACATGGAAGCAAAGAGTGTCCTGATTCCAGTTTATGGTG
TTTCCAAAGAGACTTTCTTGTCATTTTTAGAATACCTATATACTGACTCCTGTTGCCCAGCTGG
CATTTTCCAGGCCATGTGTCTCCTGATCTGTGCTGAGATGTACCAAGTCTCCAGGCTGCAGCAC
ATCTGTGAGCTGTTCATCATCACACAGCTACAGAGCATGCCAAGCAGGGAATTGGCCTCCATGA
ATCTCGATATAGTCGATCTGCTCAAAAAGGCTAAGTTCCACCACTCTGATTGCCTTTCAACCTG
GCTGCTTCATTTCATTGCGACTAACTACCTCATCTTCAGTCAAAAGCCTGAATTTCAGGATCTT
TCAGTGGAAGAACGCAGTTTTGTTGAAAAGCACAGATGGCCATCAAATATGTACTTGAAGCAAC
TTGCAGAATACAGGAAGTATATTCACTCCCGGAAATGCCGTTGCTTAGTAATGTAACCTGGAGC
TTTTATATAAGTACACTTTTTTATTATTATGGAGAATGGGTTGCAGTGAAACTCGTATGACTGA
AACCAATGTGGGCGTTAAAACAAAGATTATCATACAGTTTAATGTGTTTATTAGTTCTCCATGA
AAAAAAAACTATTGTGATCTTAAAAGGGAACAAACTATACTACCGACTAAAACAGGCTTCACCC
TAAAACATAAAGCTGTTGTACAGCTGTGTTTCCCCTATAAGATGTCCTGTTGCTTTAGTGATAT
TAAGAACCCTCCCTGATAAGAAATGTTTAAATTTTAAAAAATCATTTAGGATTAATATAGAAAT
TTCATCATGTCTGATTAATTATTAAAATACAGGGTTTTCAAATACCCAGTGTAGTTATTTCTCC
ATGAGAAATATAGGGGAAGACGAAACAGTTCAAGTTGAGATATTTGGAAAGTGATGGGCCACTT
GGTTCCAAAGCAGTGACAGTGTTTGAATCAACATCATGAAAAAAAAAATTCTTTTATCTGGACA
ATCCACCTGAATCACCTAGTGTCCTCCCTGGGATTTTGATTAGGCAGGAAACTGAACCAGGGTC
AGCTTTGTCTGTGGGTGACCTTCAGTCACAAAGGTTTCCCACTTAGAAGGGCAGGGCATTTTTT
TAGTGTTGTGCTGTTGCAGTCACAAAATTCTTAATAATGATTGAAGAAGGGCCCTGTGTTTTTA
CCTGGCACAGTGTCCCCTAAATTATGGATCTTTCCTGACA

hide sequence

RefSeq Acc Id:

XM_040271939 ⟹ XP_040127873

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	169,374,619 - 169,432,780 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005326206	(Get FASTA)	NCBI Sequence Viewer
	XP_013214466	(Get FASTA)	NCBI Sequence Viewer
	XP_040127873	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014818.3
	ENSSTOP00000028751.1
	ENSSTOP00000032419.1
GenBank Protein	KAG3266341	(Get FASTA)	NCBI Sequence Viewer
	KAG3266342	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013214466 ⟸ XM_013359012

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSIHIVALGNEGDAFHQDNRPSGLIRTYLGRSPLVSGDESSLLLNATSTVARPVFTEYQASAFG
NVKLVVHDCPVWDIFDSDWYTSRNLIGSADIIVIKYNVNDKFSFHEVKDNYIPVIKRALNSVPV
IIAAVGTRQNELPCTCPLCTSDRGSCVSTTEGIHLAKELGATYLELHSLDDFYIGKYFGGVLEY
FMIQALNQKTSEKMKKRKMNGSFHGIRPPQLEQPEKMPVLKAEASHYNSDLNNLLLCCQCVDVV
FYHPDLKEVIEAHKIVLCAVSHVFMLLFNVKSPTEIQDSSIIRTTQDLFAINRDTTFPGASQES
SGNPPLRVIVKDALFCSCLSDILRFIYSGAFQWEELEEDIRKKLKDSGDVSNVIEKVKCILKTP
GKINCLRNCKTYQARKPLWFYNTSLKFFLNKPMLADVVFEIQGTTVPAHRAILVARCEVMAAMF
NGNYMEAKSVLIPVYGVSKETFLSFLEYLYTDSCCPAGIFQAMCLLICAEMYQVSRLQHICELF
IITQLQSMPSRELASMNLDIVDLLKKAKFHHSDCLSTWLLHFIATNYLIFSQKPEFQDLSVEER
SFVEKHRWPSNMYLKQLAEYRKYIHSRKCRCLVM

hide sequence

RefSeq Acc Id:	XP_005326206 ⟸ XM_005326149
- Peptide Label:	isoform X1
- UniProtKB:	I3MRS5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSIHIVALGNEGDAFHQDNRPSGLIRTYLGRSPLVSGDESSLLLNATSTVARPVFTEYQASAFG NVKLVVHDCPVWDIFDSDWYTSRNLIGSADIIVIKYNVNDKFSFHEVKDNYIPVIKRALNSVPV IIAAVGTRQNEELPCTCPLCTSDRGSCVSTTEGIHLAKELGATYLELHSLDDFYIGKYFGGVLE YFMIQALNQKTSEKMKKRKMNGSFHGIRPPQLEQPEKMPVLKAEASHYNSDLNNLLLCCQCVDV VFYHPDLKEVIEAHKIVLCAVSHVFMLLFNVKSPTEIQDSSIIRTTQDLFAINRDTTFPGASQE SSGNPPLRVIVKDALFCSCLSDILRFIYSGAFQWEELEEDIRKKLKDSGDVSNVIEKVKCILKT PGKINCLRNCKTYQARKPLWFYNTSLKFFLNKPMLADVVFEIQGTTVPAHRAILVARCEVMAAM FNGNYMEAKSVLIPVYGVSKETFLSFLEYLYTDSCCPAGIFQAMCLLICAEMYQVSRLQHICEL FIITQLQSMPSRELASMNLDIVDLLKKAKFHHSDCLSTWLLHFIATNYLIFSQKPEFQDLSVEE RSFVEKHRWPSNMYLKQLAEYRKYIHSRKCRCLVM hide sequence

RefSeq Acc Id:	XP_040127873 ⟸ XM_040271939
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSSTOP00000028751 ⟸ ENSSTOT00000041947

Ensembl Acc Id:

ENSSTOP00000032419 ⟸ ENSSTOT00000039074

Ensembl Acc Id:

ENSSTOP00000014818 ⟸ ENSSTOT00000016558

Protein Domains

BTB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000016555	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000016558.3	UniProtKB/TrEMBL
	ENSSTOT00000039074.1	UniProtKB/TrEMBL
	ENSSTOT00000041947.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	BTB/POZ_dom	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
NCBI Gene	Rhobtb3	ENTREZGENE
PANTHER	RHO-RELATED BTB DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
	SPECKLE-TYPE POZ PROTEIN	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	Ras	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
	SSF54695	UniProtKB/TrEMBL
UniProt	A0A287DFU7_ICTTR	UniProtKB/TrEMBL
	I3MRS5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar