Rpp14 (ribonuclease P/MRP subunit p14) - Rat Genome Database

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Gene: Rpp14 (ribonuclease P/MRP subunit p14) Ictidomys tridecemlineatus
Analyze
Symbol: Rpp14
Name: ribonuclease P/MRP subunit p14
RGD ID: 12685619
Description: ENCODES a protein that exhibits ribonuclease P activity (ortholog); INVOLVED IN tRNA 5'-leader removal (inferred); tRNA processing (inferred); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Pyruvate Dehydrogenase E1-Beta Deficiency (ortholog); FOUND IN endoribonuclease complex (inferred); multimeric ribonuclease P complex (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribonuclease P protein subunit p14; ribonuclease P/MRP subunit p14, transcript variant X1; ribonuclease P/MRP subunit p14, transcript variant X2; ribonuclease P/MRP subunit p14, transcript variant X3; ribonuclease P/MRP subunit p14, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,532,643 - 169,540,061 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364732,670,918 - 2,678,629 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rpp14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,532,643 - 169,540,061 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364732,670,918 - 2,678,629 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPP14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38358,306,245 - 58,320,193 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl358,306,245 - 58,324,695 (+)EnsemblGRCh38hg38GRCh38
GRCh37358,291,972 - 58,305,920 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36358,267,012 - 58,280,960 (+)NCBINCBI36Build 36hg18NCBI36
Build 34358,267,041 - 58,279,262NCBI
Celera358,306,525 - 58,320,475 (+)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef358,388,449 - 58,402,519 (+)NCBIHuRef
CHM1_1358,242,264 - 58,256,209 (+)NCBICHM1_1
T2T-CHM13v2.0358,346,652 - 58,360,600 (+)NCBIT2T-CHM13v2.0
Rpp14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391414,377,927 - 14,389,460 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1414,377,939 - 14,389,406 (-)EnsemblGRCm39 Ensembl
GRCm38148,080,313 - 8,091,846 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl148,080,367 - 8,091,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv37148,912,827 - 8,924,360 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,872,246 - 6,883,715 (+)NCBIMGSCv36mm8
Celera143,704,261 - 3,715,938 (+)NCBICelera
Cytogenetic Map14A1NCBI
cM Map144.7NCBI
Rpp14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81519,268,025 - 19,278,216 (-)NCBIGRCr8
mRatBN7.21516,837,796 - 16,847,970 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1516,836,859 - 16,852,101 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1516,837,743 - 16,847,765 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1519,012,161 - 19,022,351 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01519,970,636 - 19,980,825 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01518,225,542 - 18,235,730 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01518,625,963 - 18,636,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1518,625,964 - 18,632,536 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01522,592,422 - 22,602,592 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41518,824,569 - 18,834,740 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11518,824,568 - 18,834,742 (-)NCBI
Celera1516,793,768 - 16,803,947 (-)NCBICelera
Cytogenetic Map15p14NCBI
Rpp14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,794,460 - 1,802,527 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,794,460 - 1,802,527 (-)NCBIChiLan1.0ChiLan1.0
RPP14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12032,282,225 - 32,290,576 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2032,282,449 - 32,289,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2032,207,241 - 32,219,039 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02032,550,375 - 32,562,157 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12032,006,682 - 32,018,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02032,363,220 - 32,375,047 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02032,534,826 - 32,546,627 (-)NCBIUU_Cfam_GSD_1.0
RPP14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11340,062,178 - 40,078,179 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HTD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12219,600,138 - 19,601,722 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041147,223,387 - 147,236,364 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpp14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248225,385,116 - 5,386,765 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005317166   ⟹   XP_005317223
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118169,532,643 - 169,539,864 (-)NCBI
SpeTri2.0NW_0049364732,670,918 - 2,678,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005317167   ⟹   XP_005317224
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118169,532,643 - 169,540,061 (-)NCBI
SpeTri2.0NW_0049364732,670,918 - 2,678,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021730827   ⟹   XP_021586502
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118169,532,643 - 169,539,656 (-)NCBI
SpeTri2.0NW_0049364732,670,918 - 2,678,314 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021730834   ⟹   XP_021586509
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118169,532,643 - 169,539,424 (-)NCBI
SpeTri2.0NW_0049364732,670,918 - 2,677,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040289659   ⟹   XP_040145593
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118169,532,643 - 169,539,786 (-)NCBI
RefSeq Acc Id: XP_005317224   ⟸   XM_005317167
- UniProtKB: I3MPN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317223   ⟸   XM_005317166
- UniProtKB: I3MPN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586502   ⟸   XM_021730827
- UniProtKB: I3MPN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586509   ⟸   XM_021730834
- UniProtKB: I3MPN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040145593   ⟸   XM_040289659
- UniProtKB: I3MPN6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015394 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015394.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.3250 UniProtKB/TrEMBL
InterPro Pop5/Rpp14/Rnp2-like UniProtKB/TrEMBL
  Rnp2-like_sf UniProtKB/TrEMBL
NCBI Gene Rpp14 ENTREZGENE
PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P14 UniProtKB/TrEMBL
  RIBONUCLEASE P PROTEIN SUBUNIT P14 UniProtKB/TrEMBL
Pfam RNase_P_Rpp14 UniProtKB/TrEMBL
Superfamily-SCOP SSF160350 UniProtKB/TrEMBL
UniProt I3MPN6 ENTREZGENE, UniProtKB/TrEMBL