Accsl (1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like) - Rat Genome Database

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Gene: Accsl (1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like) Ictidomys tridecemlineatus
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Symbol: Accsl
Name: 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like
RGD ID: 12679354
Description: ENCODES a protein that exhibits pyridoxal phosphate binding (inferred); transaminase activity (inferred); INVOLVED IN amino acid metabolic process (inferred); biosynthetic process (inferred); ASSOCIATED WITH intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494722,504,490 - 22,615,262 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365624,616,507 - 4,627,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365624,616,143 - 4,708,264 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Accsl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494722,504,490 - 22,615,262 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365624,616,507 - 4,627,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365624,616,143 - 4,708,264 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACCSL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381143,921,068 - 44,059,977 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1144,047,981 - 44,059,977 (+)EnsemblGRCh38hg38GRCh38
GRCh371144,069,531 - 44,081,527 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,026,107 - 44,038,103 (+)NCBINCBI36Build 36hg18NCBI36
Celera1144,216,736 - 44,228,734 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1143,778,609 - 43,790,603 (+)NCBIHuRef
CHM1_11144,068,495 - 44,080,491 (+)NCBICHM1_1
T2T-CHM13v2.01144,076,427 - 44,215,307 (+)NCBIT2T-CHM13v2.0
Accsl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,685,705 - 93,760,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,685,706 - 93,760,827 (-)EnsemblGRCm39 Ensembl
GRCm38293,855,360 - 93,930,482 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl293,855,361 - 93,869,157 (-)EnsemblGRCm38mm10GRCm38
MGSCv37293,695,520 - 93,709,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36293,656,202 - 93,665,655 (-)NCBIMGSCv36mm8
Celera295,251,783 - 95,265,510 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.62NCBI
Accsl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,281,817 - 100,296,514 (-)NCBIGRCr8
mRatBN7.2379,826,464 - 79,841,163 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,826,464 - 79,841,163 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,299,961 - 83,314,714 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,899,045 - 91,913,796 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,744,523 - 89,759,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,762,861 - 82,777,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,762,862 - 82,777,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,463,444 - 89,494,958 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,272,847 - 78,287,544 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera379,028,543 - 79,043,240 (-)NCBICelera
Cytogenetic Map3q31NCBI
ACCSL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2946,186,370 - 46,276,261 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11146,192,310 - 46,282,195 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,008,231 - 44,020,156 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11144,503,010 - 44,515,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1144,426,872 - 44,515,148 (+)Ensemblpanpan1.1panPan2
ACCSL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,271,070 - 18,281,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,271,066 - 18,431,580 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2219,881,457 - 19,891,860 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACCSL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,317,621 - 21,439,399 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,317,980 - 21,330,477 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038118,543,256 - 118,638,775 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Accsl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247673,988,469 - 4,000,309 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000001162   ⟹   ENSSTOP00000001040
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365624,616,507 - 4,627,568 (-)Ensembl
RefSeq Acc Id: XM_005330089   ⟹   XP_005330146
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494722,504,490 - 22,596,553 (-)NCBI
SpeTri2.0NW_0049365624,616,143 - 4,708,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284473   ⟹   XP_040140407
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494722,504,490 - 22,615,262 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005330146 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140407 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001040.3
GenBank Protein KAG3285437 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005330146   ⟸   XM_005330089
- UniProtKB: I3LY35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140407   ⟸   XM_040284473
- UniProtKB: I3LY35 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000001040   ⟸   ENSSTOT00000001162
Protein Domains
Aminotransferase class I/classII


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001158 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001162.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro Aminotransferase_I/II UniProtKB/TrEMBL
  Ethylene_sulfur-biosynth UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_small UniProtKB/TrEMBL
NCBI Gene Accsl ENTREZGENE
PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED UniProtKB/TrEMBL
  INACTIVE 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE-LIKE PROTEIN 2-RELATED UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/TrEMBL
PRINTS ACCSYNTHASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt I3LY35 ENTREZGENE, UniProtKB/TrEMBL