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Gene: Sertad3 (SERTA domain containing 3) Ictidomys tridecemlineatus

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Symbol:

Sertad3

Name:

SERTA domain containing 3

RGD ID:

12661429

Description:

INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SERTA domain-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,373,906 - 14,378,072 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936661	2,801,975 - 2,806,095 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

craniosynostosis 1 (ISO)

Diamond-Blackfan anemia (ISO)

maple syrup urine disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell growth (ISO)

positive regulation of DNA-templated transcription (ISO)

regulation of DNA-templated transcription (ISO)

Cellular Component

nucleus (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Sertad3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,373,906 - 14,378,072 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936661	2,801,975 - 2,806,095 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERTAD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	40,440,844 - 40,444,335 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	40,440,844 - 40,444,335 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	40,946,751 - 40,950,242 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	45,638,591 - 45,642,122 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	37,746,311 - 37,749,842 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	37,382,117 - 37,385,648 (-)	NCBI		HuRef
CHM1_1	19	40,946,420 - 40,949,954 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	43,261,506 - 43,264,994 (-)	NCBI		T2T-CHM13v2.0

Sertad3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	27,173,265 - 27,176,789 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	27,173,193 - 27,176,789 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	27,473,840 - 27,477,364 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	27,473,768 - 27,477,364 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	28,258,859 - 28,262,383 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	27,182,600 - 27,186,124 (+)	NCBI		MGSCv36	mm8
Celera	7	22,056,212 - 22,059,736 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	15.91	NCBI

Sertad3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	91,891,141 - 91,894,861 (+)	NCBI		GRCr8
mRatBN7.2	1	82,763,535 - 82,767,271 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	82,763,149 - 82,769,001 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	88,166,294 - 88,169,999 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	96,653,376 - 96,657,105 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	89,922,152 - 89,925,857 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	84,280,945 - 84,284,681 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	84,280,945 - 84,284,663 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	85,498,045 - 85,501,781 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	82,553,826 - 82,557,545 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	77,178,327 - 77,182,046 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Sertad3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955578	837,686 - 841,561 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955578	837,686 - 841,561 (+)	NCBI	ChiLan1.0	ChiLan1.0

SERTAD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	46,703,959 - 46,707,817 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	48,574,604 - 48,578,468 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	37,489,388 - 37,493,147 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	46,000,426 - 46,004,278 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	46,001,062 - 46,001,652 (-)	Ensembl	panpan1.1		panPan2

SERTAD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,258,274 - 113,264,013 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,261,354 - 113,263,899 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,660,215 - 112,665,954 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	113,856,637 - 113,862,374 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	113,860,716 - 113,862,243 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,415,938 - 113,421,674 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,048,418 - 113,054,155 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,042,378 - 114,048,118 (+)	NCBI		UU_Cfam_GSD_1.0

SERTAD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	48,709,065 - 48,713,086 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	48,709,064 - 48,713,113 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	44,457,026 - 44,462,490 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERTAD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	34,893,718 - 34,897,547 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	34,894,359 - 34,894,949 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	13,012,389 - 13,016,240 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sertad3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624925	425,065 - 429,338 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624925	425,469 - 429,875 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005336437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005336437 ⟹ XP_005336494

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	14,373,906 - 14,378,072 (-)	NCBI
SpeTri2.0	NW_004936661	2,801,975 - 2,806,095 (-)	NCBI

Sequence:

show sequence

CGGAGCTGGGTAGTTTGAGGCCAGGAGGAGAGGCCCCCGGGAGGTGAGCTAGGTCTCTACTCGG
CACTGGTGGGTCGGTACGCGGTAGGCTTTCCAGGAGGTGGTCGTTGCGAACCTGGCATCCGAGA
GCATCATGGTGGGAGGCCTGAAGAGGAAACACTCAGATTTGGAAGAAGAGGAGGAGGATGAAAA
GTGGGACTGGAGTCCAGCAAGCCTTCGGAGCTGCCAACAAGCTCTGCTACGTATCTCCCTAGAC
AAAGTCCAGCGCAGCCTGGGCCCCCGAGCACCCAGCCTCCGCAGGCATGTCCTCATCCACAACA
CCCTACAGCAACTCCAGGCTGCCATTCACTTGGCTCCAGCACCTGCCCTGCCCCCCGAGCCCCT
CTTCCTGGGCGAAGAAGATTTCTCCCTGTCCACCACCATCGGCTCTATCCTCAGGGAGTTGGAG
ACATCCATGGATGAGACGGAAGCACCTCAGAATCCAGTGGCTCCCCCAGGCCTCCAGAATGAAG
TGCTACCCCAACCTGACCCAGTCTTCTTAGAAGCTCTGAGCTCCCGGTACCTGGGGGACTCTGG
CCTGGATGACTTCTTTCTGGACATTGACACATCTACAGTGGAAAAGGAGCCTGCACTGGCCCCC
CCAGAACCTCCTCACAACCTCTTCTGTGCCCCAGGGTCCTGGGAGTGGAATGAACTAGATCACA
TCATGGAAATCATTCTAGGATCCTAAAAACTACCAAGGGGACAGAACCCTTCCTCACAGCGGCC
TCAGTGGGCTGGATCCCTGGATGCAACTCGTGTGTTTTGATGGGGGCTCCAGATAGTGACTACG
GTCTCCTTTCCTCCCATTTCAGGGTTCCACAAACTTACTTGCATGTGTGTGTGTCTGGTTACCC
CCGCCTTCTGTGAAGGTGGGTCTTCCTGAATTAATTTATCTGTTCCAAATGCCTTAATGAGACT
CTGTTTCTGGGAGTCTGACTTCTCACATTTCTTCTGCCTTTCCTCCAGTTCCCACTCCCCTTGT
GACCACTGGGTCCTCAGGGAAGATAAAGTGGGGCCTGTCAACAGTGGCAGGGGTGTGCTGCCAG
GTTGCTCTAGAAACCCAGGCTCTGCCTCTTGAGGGAGTGGGAGGGGCTGGTCTCCTTCCCCCAG
GTTGAACCCCACTTCCTTGGCAGGACCCCAGCCCCAGCAGCTTCCTGATTCAGAACCAGGCCGG
ACCACGTGCAATAGGGTGGAAACCAAACTGCTCCATGCCGCGTTATTTAAAAAGAAAGGCAGGG
TTTGTGGTGGCTTTTTTTTTTTTTTTTTGATTGTTTGTAATTTTTTTTATTTTAAATAAAAGTA
TTTTGAGAGGAG

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Protein Sequences


Protein RefSeqs	XP_005336494	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3256057	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005336494 ⟸ XM_005336437

- Sequence:

show sequence

MVGGLKRKHSDLEEEEEDEKWDWSPASLRSCQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTL
QQLQAAIHLAPAPALPPEPLFLGEEDFSLSTTIGSILRELETSMDETEAPQNPVAPPGLQNEVL
PQPDPVFLEALSSRYLGDSGLDDFFLDIDTSTVEKEPALAPPEPPHNLFCAPGSWEWNELDHIM
EIILGS

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Sertad3	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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