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Gene: Arl5c (ARF like GTPase 5C) Ictidomys tridecemlineatus

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Symbol:

Arl5c

Name:

ARF like GTPase 5C (Ensembl:ADP ribosylation factor like GTPase 5C)

RGD ID:

12654216

Description:

ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ADP ribosylation factor like GTPase 5C; putative ADP-ribosylation factor-like protein 5C

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	22,631,267 - 22,639,134 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,436,307 - 14,443,117 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,436,086 - 14,442,744 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

GTP binding (IEA)

GTPase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Arl5c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	22,631,267 - 22,639,134 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,436,307 - 14,443,117 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,436,086 - 14,442,744 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL5C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	39,156,732 - 39,166,161 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	39,156,894 - 39,167,484 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	37,313,147 - 37,322,414 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	37,313,147 - 37,322,414 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	33,974,029 - 33,983,324 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	33,108,642 - 33,117,880 (-)	NCBI		HuRef
CHM1_1	17	37,549,433 - 37,558,694 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	40,020,604 - 40,030,038 (-)	NCBI		T2T-CHM13v2.0

Arl5c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	97,880,404 - 97,887,109 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	97,880,404 - 97,887,007 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	97,989,575 - 97,996,285 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	97,989,578 - 97,996,181 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	97,850,892 - 97,857,487 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	97,805,668 - 97,812,263 (-)	NCBI		MGSCv36	mm8
Celera	11	107,640,031 - 107,646,502 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	61.47	NCBI

Arl5c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	83,481,540 - 83,492,915 (-)	NCBI		GRCr8
mRatBN7.2	10	82,985,213 - 82,993,425 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	82,985,216 - 82,992,002 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	87,933,495 - 87,940,225 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	87,431,579 - 87,438,309 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	82,824,198 - 82,830,931 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	85,939,836 - 85,948,131 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	85,941,176 - 85,948,080 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	85,729,667 - 85,736,666 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	86,751,321 - 86,758,083 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	81,738,459 - 81,745,298 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

ARL5C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,773,363 - 25,782,405 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	27,667,474 - 27,676,546 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	18,106,038 - 18,111,944 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	18,381,380 - 18,390,809 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	18,381,380 - 18,390,735 (+)	Ensembl	panpan1.1		panPan2

ARL5C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	23,201,466 - 23,207,640 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	23,201,857 - 23,207,012 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	22,668,637 - 22,679,102 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	23,995,778 - 24,001,944 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	23,996,148 - 24,001,216 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	22,763,359 - 22,773,816 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	23,024,436 - 23,034,901 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	23,149,590 - 23,160,054 (+)	NCBI		UU_Cfam_GSD_1.0

ARL5C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	66,994,240 - 67,008,051 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	37,940,581 - 37,954,518 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021723998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000011103 ⟹ ENSSTOP00000009960

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	14,436,307 - 14,443,117 (-)	Ensembl

RefSeq Acc Id:

XM_021723998 ⟹ XP_021579673

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,631,279 - 22,639,134 (+)	NCBI
SpeTri2.0	NW_004936490	14,436,086 - 14,442,744 (-)	NCBI

Sequence:

show sequence

GGGAGCCGCTTTCGGTTTCCTGCAACTACCGCTTGGATCTTTCTCCAGACCCCTCCTCTTGGCA
TGCCCAGAGCACCCCGGACCCTTCAGGCAATCGCTTCTAGAAATTTGGAGGGAGGTGGGACTCG
GTTCTCTTTGTCACTGTCCGGGAGTGGTGCAGGCGTCCTCCCGGCCGGTTGGGAAGTAGAAGTG
GTGCGGTGGGCAGAGATCCCTCGGCCAGCTGGGAACACTGGTCTTCCTGGGAGCCCTGTCCTTG
GACATCGGGTTTGGCTCTGACTCTGACCTTACCCGGATGCCTCCAGAGCACAAGGTCATCATCG
TGGGACTGGACAATGCAGGAAAGACCACCATTCTCTACCAGTTTTTGACCAATGAGGTGGTTCA
CACGTGTCCCACCATTGGCAGCAATGTGGAGGAGATTGTTCTTCGGAAGACCCACTTCCTCATG
TGGGACATCGGGGGACAGGAGGCGCTGCGTTCCACCTGGAGCACATACTACTCCAACACGGAGT
TCGTCATCCTTGTGATTGACAGCACAGACCGGGATCGGCTGCCCACCACTCGGGAGGAGCTGTA
CAAGATGCTGGCCCATGAGGCACTTCGAGATGCTTCAGTGCTGATCTTTGCCAACAAGCAGGAT
GTGAAGGACTCCATGACCACCGTGGAGATCTCCCAGTTCCTCACTCTCAGCGCCATCAGAGACC
ATCCGTGGCATATACAAGGCTGCTGTGCCCTGACTGGGGAAGGGCTGCCAGCAGGGCTCCAGTG
GATGCAGTCTCAGGCCACTGCCAAATGATGTCCCAGCCTGAGGCCAATGAGACATGTTGGGGGT
TCTGCATGGTCAACATGGGTGAAAAACTCAAATGCCACTTTACCTTTCTATGATTCTCTGGTGG
GAGCAGAGCCAGCTACGGACAGGGAGATTGCCACCATCTACCCAAGCCTTCACTGAGGAGCAGG
ACTGTAAGTCCTGGATTGATACAGACAGGACAACAGAAAAAACTGCCCCTCACTCCACGGATGC
AAGTGTCCTTTTTGGAGACATCAGGGAAGCTGTGATGTGCTGGGGGATTAGAAAGTGGAGCCCT
CTCCTTCTCAGCCCTCAACCTGTCTGTAGGAAACACGTGGGAAGTAAGAGGTCCTTGAAATTGC
TTCTCATTTCTTAACAATATCCACCCTCTCCAGCTTTCTAGAAAGTCTCTCATTTTTGTCCCAT
ACCCTTTGAGATTCCAGAAGGATGAAGAAGGTGGCTTGGAGGCAGGAGGGTAGGGCCAAAACCT
GGGAGGGGAAAGAACTTCCCACTCCTTCTGAGATGCTGACTCTGACTGCAGTTTGGGGGCTGTA
AGCCCCCCCAGTGGTATTCCCTTGGCTCTCAGTGTCCATCCAATGTGAATCCCACTTCTCCTAA
TTGTTCCAGATTCCTAC

hide sequence

RefSeq Acc Id:

XR_005726336

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,631,273 - 22,639,134 (+)	NCBI

RefSeq Acc Id:

XR_005726337

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,631,271 - 22,639,134 (+)	NCBI

RefSeq Acc Id:

XR_005726338

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,631,272 - 22,639,134 (+)	NCBI

RefSeq Acc Id:

XR_005726339

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,632,136 - 22,639,134 (+)	NCBI

RefSeq Acc Id:

XR_005726340

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,631,267 - 22,639,134 (+)	NCBI

RefSeq Acc Id:

XR_005726341

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,631,272 - 22,639,134 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_021579673	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009960.3
GenBank Protein	KAG3269110	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021579673 ⟸ XM_021723998
- UniProtKB:	I3MGP2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPEHKVIIVGLDNAGKTTILYQFLTNEVVHTCPTIGSNVEEIVLRKTHFLMWDIGGQEALRST WSTYYSNTEFVILVIDSTDRDRLPTTREELYKMLAHEALRDASVLIFANKQDVKDSMTTVEISQ FLTLSAIRDHPWHIQGCCALTGEGLPAGLQWMQSQATAK hide sequence

Ensembl Acc Id:

ENSSTOP00000009960 ⟸ ENSSTOT00000011103

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011104	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011103.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase_ARF	UniProtKB/TrEMBL
	Small_GTPase_ARF/SAR	UniProtKB/TrEMBL
NCBI Gene	Arl5c	ENTREZGENE
PANTHER	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 5C-RELATED	UniProtKB/TrEMBL
	PTHR11711	UniProtKB/TrEMBL
Pfam	Arf	UniProtKB/TrEMBL
PRINTS	SAR1GTPBP	UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/TrEMBL
SMART	ARF	UniProtKB/TrEMBL
	SAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	I3MGP2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-09-25	Arl5c	ARF like GTPase 5C	Arl5c	ADP ribosylation factor like GTPase 5C	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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