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Gene: Sptb (spectrin beta, erythrocytic) Ictidomys tridecemlineatus

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Symbol:

Sptb

Name:

spectrin beta, erythrocytic

RGD ID:

12652111

Description:

ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); ankyrin binding (inferred); INVOLVED IN hemopoiesis (ortholog); plasma membrane organization (ortholog); porphyrin-containing compound biosynthetic process (ortholog); ASSOCIATED WITH congenital hemolytic anemia (ortholog); Elliptocytosis 3 (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); cortical cytoskeleton (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

spectrin beta chain, erythrocytic

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	65,651,095 - 65,775,749 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	8,415,912 - 8,486,039 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	8,415,950 - 8,540,590 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital hemolytic anemia (ISO)

Elliptocytosis 3 (ISO)

genetic disease (ISO)

hemolytic anemia (ISO)

hereditary elliptocytosis (ISO)

Hereditary Pyropoikilocytosis (ISO)

hereditary spherocytosis (ISO)

hereditary spherocytosis type 2 (ISO)

neonatal anemia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament capping (IEA)

cytoskeleton organization (IEA)

hemopoiesis (ISO)

modification of postsynaptic actin cytoskeleton (IEA)

plasma membrane organization (ISO)

porphyrin-containing compound biosynthetic process (ISO)

Cellular Component

cell surface (ISO)

cortical cytoskeleton (ISO)

cytoplasm (IEA)

cytoskeleton (IEA)

cytosol (IEA)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

plasma membrane (ISO)

postsynapse (ISO)

protein-containing complex (IEA)

spectrin (IEA)

spectrin-associated cytoskeleton (IEA)

Molecular Function

actin binding (IEA)

actin filament binding (IEA)

ankyrin binding (IEA)

phospholipid binding (IEA)

protein binding (ISO)

structural constituent of cytoskeleton (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Sptb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	65,651,095 - 65,775,749 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	8,415,912 - 8,486,039 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	8,415,950 - 8,540,590 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPTB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	64,746,283 - 64,879,907 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	64,746,283 - 64,879,907 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	65,213,001 - 65,346,625 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	64,282,754 - 64,359,619 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	64,302,870 - 64,416,308	NCBI
Celera	14	45,270,736 - 45,347,605 (-)	NCBI		Celera
Cytogenetic Map	14	q23.3	NCBI
HuRef	14	45,384,969 - 45,462,806 (-)	NCBI		HuRef
CHM1_1	14	65,152,596 - 65,229,440 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	58,954,121 - 59,087,910 (-)	NCBI		T2T-CHM13v2.0

Sptb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	76,627,262 - 76,757,321 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	76,627,262 - 76,757,321 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	76,580,488 - 76,710,547 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	76,580,488 - 76,710,547 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	77,681,475 - 77,811,534 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	77,499,328 - 77,629,387 (-)	NCBI		MGSCv36	mm8
Celera	12	77,672,725 - 77,802,629 (-)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	33.73	NCBI

Sptb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	101,043,512 - 101,170,389 (-)	NCBI		GRCr8
mRatBN7.2	6	95,310,342 - 95,437,221 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	95,310,326 - 95,437,118 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	95,718,916 - 95,828,078 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	96,017,424 - 96,126,588 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	95,446,242 - 95,555,412 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	99,657,144 - 99,783,189 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	99,659,651 - 99,783,047 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	109,055,163 - 109,181,316 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	99,194,202 - 99,315,691 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	99,197,658 - 99,319,147 (-)	NCBI
Celera	6	93,748,706 - 93,857,362 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Sptb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	5,097,116 - 5,167,596 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	5,013,963 - 5,170,186 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPTB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	65,860,082 - 65,997,182 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	65,076,595 - 65,213,602 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	45,329,658 - 45,466,597 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	64,209,453 - 64,289,073 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	64,209,453 - 64,288,851 (-)	Ensembl	panpan1.1		panPan2

SPTB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	39,156,388 - 39,300,908 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	39,158,795 - 39,221,193 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	38,861,964 - 38,913,675 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	39,377,314 - 39,523,986 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	39,379,542 - 39,500,041 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	39,013,953 - 39,065,557 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	39,086,903 - 39,138,647 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	39,445,769 - 39,497,441 (-)	NCBI		UU_Cfam_GSD_1.0

SPTB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	88,812,718 - 88,954,306 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	88,812,717 - 88,954,471 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	95,193,318 - 95,335,373 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPTB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	41,957,438 - 42,038,522 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	41,978,595 - 42,038,516 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	30,129,480 - 30,266,419 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sptb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	36,202,011 - 36,270,942 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	36,151,701 - 36,272,058 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000010249 ⟹ ENSSTOP00000009197

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936495	8,415,912 - 8,486,039 (-)	Ensembl

RefSeq Acc Id:

XM_005322793 ⟹ XP_005322850

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	65,651,095 - 65,775,749 (+)	NCBI
SpeTri2.0	NW_004936495	8,415,950 - 8,540,590 (-)	NCBI

Sequence:

show sequence

GCCGCGGGACTATCTGGTCCCGGCAGCAGCGATGTCCCCCGGCAGGAATGTCCCTCCTCAGATA
ATGTTATTTATATCTCTGGGCGGGTCCGTGGCTCCGCAGCACCAGGCGCCCGGCGGCCGCTGTG
CCAGGAGCCCCGCGCTGCCCTCCTCCCCCTGCGCCGCCGCCGCCCCCAGGCTCGGGGTGGCCGC
GGCTTCAGCCCCAGCGCAGGGACCCTTCCATGAAGACTGAGGCCCACGTAGCTGCTAAGAACCT
GCTGGCATGACATCAGCCACGGAGTTTGAAAACGTGGGCAACCAGCCACCGTACAGCCGGATCA
ATGCCCGCTGGGACGCCCCGGAAGATGAGCTGGATAATGACAACAGCTCAGCCAGGCTCTTTGA
GAGGTCCCGGATCAAGGCCTTGGCAGATGAACGGGAAGTGGTTCAGAAGAAGACCTTCACAAAA
TGGGTGAACTCCCACCTGGCCCGAGTTTCCTGCCGCATCAGCGACCTCTACAAGGACCTGCGGG
ATGGGCGGATGCTCATCAAGCTGCTGGAGGTGCTCTCCGGAGAGATGCTGCCAAGGCCCACCAA
GGGAAAGATGCGCATCCACTGTCTGGAGAACGTGGACAAGGCCCTGCAGTTCCTCAAGGAGCAG
CGTGTGCACCTGGAGAACATGGGCTCCCACGACATCGTGGATGGCAACCACCGCCTGGTCCTGG
GCCTCATCTGGACCATCATCCTCCGCTTCCAGATTCAGGACATTGTTGTCCAAACTCAGGAAGG
TCGTGAGACGCGGTCAGCCAAAGACGCGTTGCTGTTGTGGTGTCAGATGAAGACCGCAGGGTAC
CCCCACGTCAATGTCACCAACTTCACCTCCAGCTGGAAGGATGGCCTGGCCTTTAATGCCCTGA
TCCACAAGCACCGGCCTGACCTGATCGATTTTGATAAGCTGAAGGACTCCAATGCCCGGCATAA
CCTAGAACATGCATTTGATGTGGCTGAGCGCCAACTGGGCATCATCCCGCTCCTCGACCCTGAA
GATGTCTTCACAGAAAACCCAGATGAGAAATCCATCATCACGTACGTGGTGGCATTTTACCACT
ACTTCTCCAAGATGAAGGTGCTGGCAGTGGAGGGCAAGCGTGTCGGCAAGGTCATTGACCACGC
CATTGAGACTGAGAAGATGATTGAAAAGTACAGTGGGCTAGCCTCAGACCTACTCACTTGGATC
GAGCAGACCATTAACGTCCTGAACAGCCGCAAGTTTGCCAACTCGCTGACCGGCGTCCAGCAGC
AGCTGCAGGCCTTCAGCACCTACCGCACAGTGGAGAAGCCACCCAAGTTTCAGGAGAAGGGGAA
CCTGGAAGTCCTACTTTTTACCATCCAGTCTCGGATGAGAGCTAATAATCAGAAAGTGTATACG
CCCCACGACGGGAAACTAGTGTCTGACATCAACCGGGCCTGGGAAAGTCTGGAGGAAGCTGAGT
ACCAGAGGGAGCTGGCCCTGAGGAGCGAGCTCATTCGGCAGGAGAAGCTGGAGCAGCTGGCCCG
GCGCTTTGACAGAAAGGCTGCCATGAGAGAGACGTGGCTCAACGAAAACCAGCGCCTTGTGACT
CAGGATAACTTTGGGTACGACCTGGCAGCTGTGGAGGCTGCCAAGAAGAAGCACGAGGCCATCG
AGACTGACACAGCTGCCTACGAAGAGCGGGTGAAGGCCCTGGAGGACCTGGCCCAGGAGCTGGA
GAAGGAGAATTACCATGACCAGAAGCGTATCATGGCCCGCAAGGACAACATCCTGCGCCTGTGG
AGCTACCTGCAGGAGCTGCTGCGGTCCCGGCGCCAGAGGCTCGAGACGACCCTGGCCCTGCAGA
AGCTCTTTCAGGACATGCTGCACAGCATCAACTGGATGGACGAGATCAAGGCTCACCTGTTGTC
TGCTGAGTTTGGGAAGCACTTGTTGGAGGTTGAGGACTTGCTACAAAAGCACAAGTTGATGGAG
GCTGACATCGCCATCCAAGGGGACAAAGTCAAGGCCATCACTGCAGCCACCCTGCAGTTCACTG
AGGGGAAAGGGTACCAACCTTGTGACCCCCAGATCATCCAGGACCGTGTCAGCCACCTGGAGCA
GTGTTTTGGGGAGCTGAGTGACATAGCAGCTGGGCGGAAGGCACAGCTAGAGCAGTCCAAGAGG
CTCTGGAAGTTCTTCTGGGAGATGGATGAGGCCGAGAGCTGGATCAAGGAGAAAGAGCAGATCT
ACTCCTCCTTGGACTACGGCAAGGACCTGACCAGTGTGCTCATCTTGCAGCGCAAACACAAAGC
CTTCGAGGATGAGCTGCGCGGGCTGGATGCCCACCTGGGGCAGATTTTTCAGGAGGCCGAAGGC
ATTATTGCACGCAAGCAGTACGGGTACCCGCGGATAGAGGCCCGCGTCAAGGAGGTGTCGGGCC
AGTGGGACCAGCTGAAGGAGCTGGCTGCCTTTCGTAAAAAGAATCTCCAGGATGCGGAGAACTT
CTTCCAGTTCCAGGGAGATGCGGACGATCTGAAGGCCTGGCTGCAAGATGCCCACCGGCTGCTC
TCTAGTGAAGATGTGGGGCAGGATGAAGGGGCCACACGGGCCCTGGGGAAGAAGCACAAGGACT
TCCTAGAGGAGCTGGAAGAGAGCCGAGGGGTGATGGAGCACCTGGAACAGCAGGCTCAGGACTT
CCCCCAAGAATTTCGGGATTCCCCCGATGTGACCAACAGGCTACAGGCCCTCCGGCAGCTCTAC
CAGCAGGTGGTGGCCCAGGCGGACTTGCGTGGGCAGAGGCTGCAGGATGCCCTGGACCTGTATA
CAGTGTTTGGGGAGACGGATGCCTGTGAGCTGTGGATGGGCGAGAAGGAAAAGTGGCTGAAGGG
GATGGAAATCCCAGACACCCTGGAGGACCTGGAGGTCGTGCAGCACAGGTTTGACATCTTGGAC
CAGGAGATGAAGACTTTGAAGGGTCAAATCGAAAACGTGAACCTTGCTGCCAACAGCTTGGTGG
AGAGTGGCCACCCACGCAGCGAGGAAGTGCGGCGGTACCAGGACCACCTGAACACCAGGTGGCA
GGAATTCCAGAACATGGTGTCAGAGCGGAGGGAGGCGGTGGACTCAGCCCTCAGGGTGCACAAC
TACTGCGTGGACTGTGAGGAGACCGGCAAGTGGATATCAGACAAGACTAGCATTGTAGAGTCTA
CAAAGGACCTGGGGCGGGACCTGGCGGGTGTCATTGCCATCCAGAGAAAGCTGACAGGGCTGGA
GCGTGATGTGGCTGCAATCCAGGCCCGTGTGGGTGCCCTAGAGCGTGAGTCTCAGCGGCTGATG
GAGTCACACCCCGAACTGAAGGAGGACATTGGGTCGCGGCAGGCATATGTTGAGGAGCTGTGGA
AGGGCCTGCAGGAAGCCCTGAAGGGCCAGGAGGACTCGCTGGGTGAAGCCAGTCAGCTGCAGGC
CTTCCTGCAGGATCTAGATGACTTCGACACCTGGCTGTCCTTGGCCCAGAAGGCTGTGGCTTCT
GAGGACATGCCTGAGTCATTCCCAGAGGCTGAGCAGCTCCTGCAGCAGCATAAATCCATCAAGG
ATGAGATTGATGGACACGAAGAAAACTTCAAGAAGGTGAAGGCCGCCGGAGAGAAGGTGATCCA
AGGCCAGACAGAGCCGGAGTATGTGCTTCTAGGCCAGCGACTGGAGAATCTAGATGCTGGCTGG
GACGCCCTGTGCCGGATGTGGGAGGGCCGCGGCCGTTCCCTCGAACAGTGCCTCGGCTTTCAGG
AGTTCCAGAAAGATGCCAAGCAGGCCGAAGCCATCCTCAGCAGCCAGGAATACACTCTGACTCA
CACGGAGCCCCCAGACTCCCTAGAAGGTGCAGAGGCTGGGATCCGCAAGTTCGAGGATTTCTTG
GTGTCTATGGACAGCAACCGGGAAAAGGTCTTGAGTCCCGTGGACTCTGGAAACAAGCTGGTAG
CTGAGGGAAACCTGTACTCTGACAAGATCAAGGAGAAGGTGCAGCTGATTGAAGAAAGACACCA
GAATAACAATGAGAATGCCCAGAAGCTCTCGGTTCTTCTGAGAGACAACCTAGAACTACAGAAC
TTCCTCCAGAACTGCCAGGAGCTTACTCTCTGGATCAATGACAAATTGCTGACTACCCCGGATA
TCTCCTATGATGAAGCTCGCAATCTTCACAACAAATGGCTGAAGCACCAGGCGTTTCTAGCAGA
GCTGGAGTCCCACCAAGGGTGGCTTGAGAACATTGATGCAGAAGGAAGGCAGCTGAAGGAGGAG
AAGCCCCAATTTGAAGCCGTGGTGTCTCAGAGGCTGGACGCACTGCACCAGCTCTGGGATGAGC
TACAAGCCACCACCAAGGAGAAGACCCTACAACTCTCAGCCGCCAGGAGCTCCGACCTGCGCTT
GCAGACCCACGCTGACCTCAACAAATGGATCAGCGCCATGGAGGACCAGCTTCGGTCGGATGAC
CCGGGCAAGGACCTGACCAGTGTCAATCGGATGTTGGCTAAGTTGAAGAGAGTGGAGGACCAGG
TGAATGTGCGGAAGGAGGAGCTGCAGGAGCTGTTTGGCCAGGCACCCTCACTGGGAGAAGAGGC
AGGAGATGCTGACCTGAGCATCGAGAAGAGATTCCTGGACCTCCTGGAACCTCTGGGGAAGAGG
AGGAAGCAGCTGGAATTATCCAAAGCCAAGCTGCAGATCAGCCGGGACTTAGAGGATGAGACGC
TTTGGGTGGAGGAGAGGTTGCCACTGGCCCAGTCAGCCGACTATGGCACTAACCTGCAAACAGT
GCAGCTGTTCATGAAGAAGAACCAGACACTGCAGAACGAGATCCTGGGCCACGCGCCACGGGTG
GAGGACGTGCTGCAGCGGGGACGGCAGCTCGTGGAGACGGCGGAGATGGACCTCCAGGACATCG
AAGAACGCCTGGGGCACCTGCAAGACTCGTGGGCAGCGCTGCGGGAGGCGGCGGCTGGGCGGCT
GCAGCGCCTGCGGGATGCCCACGAGGCGCAGCAGTACTACCTGGACGCTGGGGAGGCCGAGGCC
TGGATCAGCGAGCAGGAGCTCTACGTCTTCTCTGATGAGCCCCCCAAGGATGAAGAGGGTGCCA
TCGTGATGCTCAAGCGGCACTTGAGGCAGCAGCGCACCGTGGAGGAGTATGGGAGGAACATGAA
GCAGCTGGCCGGCCGTGCCCAGAGCCTGCTGTCCGCGGGACACCCCGAGGGGGAACAGATCATC
AGACTTCAGGGGCAAGTGGACAAGCAGTATGCGGGGCTGAAGGACATGGCAGAGGAACGCAGGC
GGAAGCTGGAGAACATGTACCATCTGTTCCAGCTGAAGAGGGAGGCTGACGACCTGGAGCAGTG
GATTACAGAAAAGGAGATGGTGGCCTCGTCCCAAGAAATGGGGCAAGACTTTGACCACGTGACT
ATGCTTCGGGACAAATTCCGAGACTTTGCCCGGGAGACTGGGGCCATCGGGCAGGAGCGGGTGG
ACAATGTGAATGCCATCATTGAGCGACTCATCGATGCAGGCCACAGCGAGGCGGCCACCATCGC
TGAGTGGAAGGACGGGCTGAATGACATGTGGGCAGACCTGCTGGAGCTCATCGATACCCGCATG
CAGCTGCTGGCGGCCTCCTATGACCTGCACCGCTACTTCTACACTGGGGTGGAGATCCTGGGCC
TCATCGACGAGAAGCACCGCGAGCTGCCTGAGGACGTGGGGTTGGACGCCAGCACTGCCGAGTC
CTTCCACCGGGTGCACACGGCCTTCGAGCGGGAGCTCCACTTGCTGGGAGTGCAGGTACAGCAG
TTCCAGGATGTGGCTACCCGCCTGCAGACGGCATACGCCGGGGAGAAGGCAGACGCCATCCAGG
GCAAGGAACAGGAGGTGTCTGCCGCTTGGCAGGCATTGCTCGATGCCTGTGCTGGGCGCCGGAC
TCAACTCGTGGACACGGCAGACAAGTTCCGCTTCTTCAGCATGGTCCGGGATCTGCTTTCCTGG
ATGGAGGGTATCATCCGGCAGATCGATACCCAGGAGAGGCCCAGGGATGTGTCCTCCGTGGAAC
TACTCTTGAAGTATCACCAGGGCATCAAGTCAGAGATCAACACCCGGGCCAAGAACTTCAGCAC
CTGTGTGGAGCTCGGGGAGTCCCTGCTACAGCGGCAACACCAGGCTTCAGAGGAGATCCAGGAA
AAACTGAAGCAGGTATTGATCAGGAGGCAGGAGATGAATGATAAATGGGTGACCCGAGATGATC
GGCTCCACATGCTGCTGGAGGTGTGCCAGTTCTCGAGGGATGCCTCTGTGGCCGAAGCATGGCT
CATTGCCCAGGAGCCCTACCTGGCCAGCCGGGACTTTGGCCACACTGTGGACAGCGTAGAGAAG
CTGATCAAGAGGCATGAGGCTTTTGAGAAGTCCACAGCCACCTGGGCAGAGCGCTTTGCTGCTC
TGGAGAAGCCCACCACGCTTGAGCTTAAAGAACGCCAGACTCCAGAGATACCTGCAGAGGAGCC
CGGGCCTCAAGAGGAGGAAGGCGAGACAGCAGGGGAGGCTCCCCGAGTTCCCCACCCTGCGGCG
ACTGAGAGAACATCCCCGGGGGAAGAAGAGAGGCCATGGCCTCAGGACCTGCAGCCACCACCCT
TGCCTGGGCAGGAGGAGAAATCTGATGAAAATGAGAGGCCTGCCACGGAGACCCTGTTGAAGGT
CCTAGACACTCCTCTGAGTGAGGGCGACGAGCCCACAACATTGCCGGCCCAGCGGGACCACGGG
CACAGCGTGCAGATGGAGGGCTACCTTGGCCGCAAGCATGACCTGGAGGGGCCCAACAAGAAGG
CATCCAACAGGTCCTGGAACAATTTGTACTGTGTGCTCAGGAATAGTGAACTGACCTTCTACAA
GGACGCCAAAAACCTGGCCCTGGGGGTTCCCTACCATGGGGAGGAGCCCCTGGCCCTGAGACAT
GCTATCTGTGAGATCGCTGCCAACTACAAAAAGAAGAAGCACGTCTTTAAGCTGAGGCTGAGTA
ATGGCAGCGAGTGGCTCTTCCATGGCAAAGATGAGGAGGAGATGCTGTCCTGGCTGCAAGGTGT
GAGCACGGCCATCAACGAGTCCCAGAGCATCCGCGTCAAGACGCAGAGCCTGCCTCTGCCCTCC
CTCACTGGCCCGGATGCCAGTCTTGGCAAGAAGGACAAGGAGAAGAGATTCAGTTTCTTCCCCA
AAAAGAAATAGCAGCCGATGGCCCCCGCTGGTGGGGCCAGCCAGGCAGGCGCAGTGGTGCATCA
GGGCACACAGGGACCGGCCACCTGAGGCCGTGGGCCCTGACCTCCTCCACAGTGGATGGTCCTC
CTCCACCTCCTGCCCACCAGCTCGAGAGTCACCAGGCCGGCCCCTGGGGCCCCCGCTGCGCTGC
AATAGCTGCCTCTGCGCCCTGCCTGGCAGCCCCGATGCCTGCCAACATGCCCTCTGCCTGTGGC
ACAGACGGCTTGGCTCCAGGGGGCAGGAAACGGTTCCCCGAGGCGCATGCCCTCCTCTCTGCAT
CCCCATAAAAGCAGAAGGTGGCTGATGGGGCTTGTCCAATGCTGCCCACTCCCACAGCAAGTCG
TGCTTGGGGTTACCTCCCATGTGGTCACAGCCAGGAAAGGGGAAGGGAAAGGGAAGGGGGACAC
TGGCAAAGCCTGACTTGCCCTTAGAGGAATGAGGAGACTTCAGGGGGGCCACAGAGCCCCAGCT
CTGGGCAAGGGGCTGCTGGGGGACTGAGGGGAAAAGAAGGAACACGGGGCCTCAGGTGCTGCCA
GCCACCTCCCCACTGGGCTTTCTCAGAACTGGGTCCCTCCTTAGGGCCAGCAGATACTCTCCTC
TCCCCTCCTCTGTGTTGTGGGTCCTGACTGAGGGAGCCTCCTGCTGCCCCTGGCACCCTTTTTT
GGTACCAGCAGAGACTGAAGGAGGGAGGACCAGCAGTTCTCAAACCATTCCTCTTTGAAAACCC
TAGTTAGAGCTTCGGGCTCAGGGCTCAGACCTGAAGGAGGGACAGACAGGTCCCCACACTGCCT
AAGGCTCTGCCTCTCCGGGCTGGGATCCTTCCCACTCCCAGTAGCAACCAAGCCAGCAATATCC
GCTAGATGCACAGCGGGGAACCAGTGTAGGCCCCCAGATATGGGATGGATGCCCCAGCACCTGG
TGAAGCATCCCAAAGTCCAGTGCCCACTGTGTCTGCAGCTGGTGTCATCCAAGGCTACTGACTG
ACCGGACAGAGAGCTGGTTTGTCAGAGTGGAGTGACAAATATGGCCGTACCTAGGTATTAACGG
CATGTGACACAACTACCGCTGGGCAGCTGGGATAAACGCTGGGGCCAGAGAGGGCCTGGCCTTG
GGTTCTGAGAGACATAATGATACAGAGATCACCAAACATCTCCCAAACCCACCTCCAAACACTA
ACAGGGGCTCTGCAATCTCTGTCCCCAGGGAGAGCCTTCCCCATGCTCTGGAGGGGCGAAATCA
CCAGTCCAATGAGGACTTTCCTTCTCTGAAAGCAATACAGCTTCAGCCCAGCGTCTTATCTGGG
GTTAGGTCCTAAAGAGGGGATCAAGCTGGAGGCAGCAGGCGTGCTCCCCCAGGGAGACCAAAAA
GGTCCCCAGGGCCCAAAGCTACTTTTTCTATTGCCTTCCCTATGGGAAGGAGCTTTGGCTTTGT
GGAAATGAATCAGGTAAGACTCAGGGAAAAGCCACACAGGTAGATATCAGAGTTGGGAGGCCTT
CCCAGGAACCTTTAGTACTGACTGGGGCAGGCACAGCTCAGAGAGCACTATGTCCGGGTGAGGC
CGACTCCATCAGGCAGGATCCACACGGGAGGGAATCAGTTACCCAATGGAGCCTGCTCTCCCCA
CATGAGGTCTTCCACCTCTATAGGGAGGGTCTTCATTTGGCCTCAACACATAGGACCCTATGAC
CCTCTGCTTCTACAGGGAACCTGGCATGTTCCATTAGTCAGCCTCTGTCTACTGCTGGGGAAGC
CAAGGCTAGAAGGTGACCATACTCACCTGGCAGTAAAAAAAGTCTTTGGTGCATTCAAAGGCAG
GCCCACCTCTGGGACAGAGAGCAGGCTCCTTGCCAAGGGCAGAAGGTGACAAGTAGCTCGCAAC
TATTTCCCCGGGGCCAGTAGTGAGCCAATGGACAAAGGTCCACCTTCTCCCCTCCATGTGTGCC
CAAGTAGCACCAGAAGTGAGGAATTTCCAGTGAGCAACTCCATGGAGTCAAGAAAGAAAGGGCT
CCATGGAAGAGCTAGAATTTCGCCACCCCAGGTCCCCAGGATTGGGCAAGGGCAGCCAGCTGCA
TGTGATTCACTATCTACCGCCAGCTCCCCACGCATCTTGCCCACGTCAACCAGGTCCCGAGACA
CTCAATCAACTGGACTGACATCGCAGGTGCCCGAATTTGGGAGACTCTATGCCACTCCAGGACT
AAGCTCTCCAGGTGCCCTGGCAAGGTTTCTTTTTTTCCCTTCTTTTCTCATAGTTTTCTACTTT
GCAGTCTTTTCCTTGACAGTGTTTCCAAACTAGGGTGACACAGCTCCAGTCCACACCAGCATAA
CAGGCTTCCTCCCCAGGGCGGCTTAGAGGAAGCTCCTTCTGGGCATGTCAGGCGTCCTCCTGCC
CACTCTTCCTCTTTGTCCCTGACCTCAGCTGATTCTGGCTGAGGGAGGAGTGGAGGGTCCTGGG
GCTCCCCCCACTCGTAACTTTCACTAAGCACCCAGAACAGGAGGCCTGTGTCGGGCTCGGCTTT
CCCCCCTACTCCACCCCTCCGTACTGCCTGTGGGAGGGCAATCAGGTCCCCTAGACTGGTCCTG
GATCTCCTTCCTCCCTCAGTGGGAGGGGGCAGAGATCCAGAAGAGGAAGAGACCAGCTGGCCAC
ATGGCTTGGTCCCTTGGACAAGCAAGCTCAGGGAGGATGCAAGAGAGGAGGTGGCTGCGGAGGA
ATGTCACTTGTTGGGTACAGAATATGCTATCTGGGGCTGGCCCTGGGGCCGGCTGGGCCTTGTC
CTCCACCTGCTCAAATGTGCTTCCACCAACCAGAGGAAACCCATTTACTAGTTTTTCTAATAAA
TCTATATAATGCTCCACA

hide sequence

RefSeq Acc Id:

XM_040275183 ⟹ XP_040131117

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	65,651,095 - 65,764,783 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005322850	(Get FASTA)	NCBI Sequence Viewer
	XP_040131117	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009197.3
GenBank Protein	KAG3261294	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005322850 ⟸ XM_005322793
- Peptide Label:	isoform X1
- UniProtKB:	I3MF47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSATEFENVGNQPPYSRINARWDAPEDELDNDNSSARLFERSRIKALADEREVVQKKTFTKWV NSHLARVSCRISDLYKDLRDGRMLIKLLEVLSGEMLPRPTKGKMRIHCLENVDKALQFLKEQRV HLENMGSHDIVDGNHRLVLGLIWTIILRFQIQDIVVQTQEGRETRSAKDALLLWCQMKTAGYPH VNVTNFTSSWKDGLAFNALIHKHRPDLIDFDKLKDSNARHNLEHAFDVAERQLGIIPLLDPEDV FTENPDEKSIITYVVAFYHYFSKMKVLAVEGKRVGKVIDHAIETEKMIEKYSGLASDLLTWIEQ TINVLNSRKFANSLTGVQQQLQAFSTYRTVEKPPKFQEKGNLEVLLFTIQSRMRANNQKVYTPH DGKLVSDINRAWESLEEAEYQRELALRSELIRQEKLEQLARRFDRKAAMRETWLNENQRLVTQD NFGYDLAAVEAAKKKHEAIETDTAAYEERVKALEDLAQELEKENYHDQKRIMARKDNILRLWSY LQELLRSRRQRLETTLALQKLFQDMLHSINWMDEIKAHLLSAEFGKHLLEVEDLLQKHKLMEAD IAIQGDKVKAITAATLQFTEGKGYQPCDPQIIQDRVSHLEQCFGELSDIAAGRKAQLEQSKRLW KFFWEMDEAESWIKEKEQIYSSLDYGKDLTSVLILQRKHKAFEDELRGLDAHLGQIFQEAEGII ARKQYGYPRIEARVKEVSGQWDQLKELAAFRKKNLQDAENFFQFQGDADDLKAWLQDAHRLLSS EDVGQDEGATRALGKKHKDFLEELEESRGVMEHLEQQAQDFPQEFRDSPDVTNRLQALRQLYQQ VVAQADLRGQRLQDALDLYTVFGETDACELWMGEKEKWLKGMEIPDTLEDLEVVQHRFDILDQE MKTLKGQIENVNLAANSLVESGHPRSEEVRRYQDHLNTRWQEFQNMVSERREAVDSALRVHNYC VDCEETGKWISDKTSIVESTKDLGRDLAGVIAIQRKLTGLERDVAAIQARVGALERESQRLMES HPELKEDIGSRQAYVEELWKGLQEALKGQEDSLGEASQLQAFLQDLDDFDTWLSLAQKAVASED MPESFPEAEQLLQQHKSIKDEIDGHEENFKKVKAAGEKVIQGQTEPEYVLLGQRLENLDAGWDA LCRMWEGRGRSLEQCLGFQEFQKDAKQAEAILSSQEYTLTHTEPPDSLEGAEAGIRKFEDFLVS MDSNREKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEERHQNNNENAQKLSVLLRDNLELQNFL QNCQELTLWINDKLLTTPDISYDEARNLHNKWLKHQAFLAELESHQGWLENIDAEGRQLKEEKP QFEAVVSQRLDALHQLWDELQATTKEKTLQLSAARSSDLRLQTHADLNKWISAMEDQLRSDDPG KDLTSVNRMLAKLKRVEDQVNVRKEELQELFGQAPSLGEEAGDADLSIEKRFLDLLEPLGKRRK QLELSKAKLQISRDLEDETLWVEERLPLAQSADYGTNLQTVQLFMKKNQTLQNEILGHAPRVED VLQRGRQLVETAEMDLQDIEERLGHLQDSWAALREAAAGRLQRLRDAHEAQQYYLDAGEAEAWI SEQELYVFSDEPPKDEEGAIVMLKRHLRQQRTVEEYGRNMKQLAGRAQSLLSAGHPEGEQIIRL QGQVDKQYAGLKDMAEERRRKLENMYHLFQLKREADDLEQWITEKEMVASSQEMGQDFDHVTML RDKFRDFARETGAIGQERVDNVNAIIERLIDAGHSEAATIAEWKDGLNDMWADLLELIDTRMQL LAASYDLHRYFYTGVEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQ DVATRLQTAYAGEKADAIQGKEQEVSAAWQALLDACAGRRTQLVDTADKFRFFSMVRDLLSWME GIIRQIDTQERPRDVSSVELLLKYHQGIKSEINTRAKNFSTCVELGESLLQRQHQASEEIQEKL KQVLIRRQEMNDKWVTRDDRLHMLLEVCQFSRDASVAEAWLIAQEPYLASRDFGHTVDSVEKLI KRHEAFEKSTATWAERFAALEKPTTLELKERQTPEIPAEEPGPQEEEGETAGEAPRVPHPAATE RTSPGEEERPWPQDLQPPPLPGQEEKSDENERPATETLLKVLDTPLSEGDEPTTLPAQRDHGHS VQMEGYLGRKHDLEGPNKKASNRSWNNLYCVLRNSELTFYKDAKNLALGVPYHGEEPLALRHAI CEIAANYKKKKHVFKLRLSNGSEWLFHGKDEEEMLSWLQGVSTAINESQSIRVKTQSLPLPSLT GPDASLGKKDKEKRFSFFPKKK hide sequence

RefSeq Acc Id:	XP_040131117 ⟸ XM_040275183
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000009197 ⟸ ENSSTOT00000010249

Protein Domains

Calponin-homology (CH) PH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010226	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010249.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
	1.20.58.60	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	Actinin_actin-bd_CS	UniProtKB/TrEMBL
	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PH_9	UniProtKB/TrEMBL
	PH_dom-spectrin-type	UniProtKB/TrEMBL
	PH_domain	UniProtKB/TrEMBL
	Spectrin/alpha-actinin	UniProtKB/TrEMBL
	Spectrin_bsu	UniProtKB/TrEMBL
	Spectrin_repeat	UniProtKB/TrEMBL
NCBI Gene	Sptb	ENTREZGENE
PANTHER	SPECTRIN BETA CHAIN, ERYTHROCYTIC	UniProtKB/TrEMBL
	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	UniProtKB/TrEMBL
Pfam	PF00307	UniProtKB/TrEMBL
	PH_9	UniProtKB/TrEMBL
	Spectrin	UniProtKB/TrEMBL
PIRSF	Spectrin_beta_subunit	UniProtKB/TrEMBL
PRINTS	SPECTRINPH	UniProtKB/TrEMBL
PROSITE	ACTININ_1	UniProtKB/TrEMBL
	ACTININ_2	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
	PS50021	UniProtKB/TrEMBL
SMART	SM00033	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
	SPEC	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	Spectrin repeat	UniProtKB/TrEMBL
	SSF47576	UniProtKB/TrEMBL
UniProt	I3MF47	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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