Znf646 (zinc finger protein 646) - Rat Genome Database

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Gene: Znf646 (zinc finger protein 646) Ictidomys tridecemlineatus
Analyze
Symbol: Znf646
Name: zinc finger protein 646
RGD ID: 12640819
Description: ENCODES a protein that exhibits metal ion binding (inferred); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); dilated cardiomyopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,344,954 - 125,354,313 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,444,401 - 13,452,607 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,442,720 - 13,452,393 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf646
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,344,954 - 125,354,313 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,444,401 - 13,452,607 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,442,720 - 13,452,393 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF646
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,072,687 - 31,084,196 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,074,422 - 31,084,196 (+)EnsemblGRCh38hg38GRCh38
GRCh371631,085,743 - 31,095,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,993,269 - 31,002,334 (+)NCBINCBI36Build 36hg18NCBI36
Build 341630,993,268 - 31,002,332NCBI
Celera1629,202,670 - 29,211,760 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,647,442 - 28,656,532 (+)NCBIHuRef
CHM1_11632,403,044 - 32,412,134 (+)NCBICHM1_1
T2T-CHM13v2.01631,460,383 - 31,471,624 (+)NCBIT2T-CHM13v2.0
Zfp646
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,476,081 - 127,485,168 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,475,393 - 127,485,168 (+)EnsemblGRCm39 Ensembl
GRCm387127,876,914 - 127,885,996 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,876,221 - 127,885,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,021,215 - 135,029,510 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,668,849 - 127,677,144 (+)NCBIMGSCv36mm8
Celera7127,712,696 - 127,721,192 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.8NCBI
Zfp646
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,915,486 - 191,925,440 (+)NCBIGRCr8
mRatBN7.21182,485,009 - 182,494,961 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,485,949 - 182,494,731 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,836,164 - 190,845,503 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,022,259 - 198,031,597 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,692,659 - 190,702,001 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,321,354 - 199,331,256 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,323,628 - 199,330,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,343,354 - 206,353,688 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,161,668 - 187,169,216 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1180,136,000 - 180,145,763 (+)NCBICelera
Cytogenetic Map1q37NCBI
Znf646
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,913,712 - 7,920,695 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,911,685 - 7,921,385 (+)NCBIChiLan1.0ChiLan1.0
ZNF646
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,281,713 - 34,291,010 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11639,083,309 - 39,092,390 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,883,894 - 23,893,542 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,443,174 - 31,452,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,443,174 - 31,452,255 (+)Ensemblpanpan1.1panPan2
ZNF646
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,148,923 - 17,157,563 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,148,403 - 17,156,226 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,724,279 - 18,733,047 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,279,804 - 17,288,579 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,274,141 - 17,288,582 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,080,204 - 17,088,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,999,064 - 17,007,832 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,311,449 - 17,320,217 (-)NCBIUU_Cfam_GSD_1.0
ZNF646
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,384,088 - 17,406,624 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,396,757 - 17,406,630 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,727,325 - 17,737,129 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF646
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,762,300 - 27,771,107 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660681,696,785 - 1,705,996 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf646
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,125,696 - 14,134,814 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000029941   ⟹   ENSSTOP00000018616
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650113,444,401 - 13,452,607 (+)Ensembl
RefSeq Acc Id: XM_005323879   ⟹   XP_005323936
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344125,344,954 - 125,354,313 (+)NCBI
SpeTri2.0NW_00493650113,442,720 - 13,452,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357984   ⟹   XP_013213438
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344125,344,954 - 125,354,313 (+)NCBI
SpeTri2.0NW_00493650113,442,720 - 13,452,393 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323936 (Get FASTA)   NCBI Sequence Viewer  
  XP_013213438 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018616.1
GenBank Protein KAG3259683 (Get FASTA)   NCBI Sequence Viewer  
  KAG3259684 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323936   ⟸   XM_005323879
- UniProtKB: I3N2M0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013213438   ⟸   XM_013357984
- UniProtKB: I3N2M0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000018616   ⟸   ENSSTOT00000029941
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021473 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029941.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf646 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 717 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3N2M0 ENTREZGENE, UniProtKB/TrEMBL