LOC101977326 (beta-galactosidase-1-like protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC101977326 (beta-galactosidase-1-like protein 2) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101977326
Name: beta-galactosidase-1-like protein 2
RGD ID: 12631703
Description: ENCODES a protein that exhibits beta-galactosidase activity (inferred); hydrolase activity, acting on glycosyl bonds (inferred); INVOLVED IN carbohydrate metabolic process (inferred); FOUND IN membrane (inferred); vacuole (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-galactosidase-1-like protein 2, transcript variant X1; beta-galactosidase-1-like protein 2, transcript variant X2; beta-galactosidase-1-like protein 3; LOC110599408
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947116,039,658 - 116,105,753 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366841,495,267 - 1,534,066 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
vacuole  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


RefSeq Acc Id: XM_021734686   ⟹   XP_021590361
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947116,052,780 - 116,105,753 (+)NCBI
SpeTri2.0NW_0049366841,495,267 - 1,534,066 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040285569   ⟹   XP_040141503
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947116,039,658 - 116,105,753 (+)NCBI
RefSeq Acc Id: XM_040285570   ⟹   XP_040141504
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947116,052,380 - 116,105,753 (+)NCBI
RefSeq Acc Id: XM_040285571   ⟹   XP_040141505
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947116,052,795 - 116,105,753 (+)NCBI
RefSeq Acc Id: XM_040285572   ⟹   XP_040141506
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947116,052,530 - 116,105,753 (+)NCBI
RefSeq Acc Id: XM_040285573   ⟹   XP_040141507
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947116,051,971 - 116,105,753 (+)NCBI
RefSeq Acc Id: XP_021590361   ⟸   XM_021734686
- UniProtKB: I3NGJ2 (UniProtKB/TrEMBL),   A0A287CU15 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141503   ⟸   XM_040285569
- UniProtKB: I3NGJ2 (UniProtKB/TrEMBL),   A0A287CU15 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141507   ⟸   XM_040285573
- UniProtKB: I3NGJ2 (UniProtKB/TrEMBL),   A0A287CU15 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141504   ⟸   XM_040285570
- UniProtKB: I3NGJ2 (UniProtKB/TrEMBL),   A0A287CU15 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141506   ⟸   XM_040285572
- UniProtKB: I3NGJ2 (UniProtKB/TrEMBL),   A0A287CU15 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141505   ⟸   XM_040285571
- UniProtKB: I3NGJ2 (UniProtKB/TrEMBL),   A0A287CU15 (UniProtKB/TrEMBL)
Protein Domains
Beta-galactosidase 1-like first all-beta   Beta-galactosidase galactose-binding   Glycoside hydrolase 35 catalytic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026301 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028422.2 UniProtKB/TrEMBL
  ENSSTOT00000036036.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
InterPro B-gal_1-like UniProtKB/TrEMBL
  BetaGal1-like_ABD1 UniProtKB/TrEMBL
  BetaGal_gal-bd UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Gly_Hdrlase_35_cat UniProtKB/TrEMBL
  Glyco_hydro_35_CS UniProtKB/TrEMBL
  Glycoside_Hdrlase_35 UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
NCBI Gene LOC101977326 ENTREZGENE
PANTHER BETA-GALACTOSIDASE UniProtKB/TrEMBL
  PTHR23421 UniProtKB/TrEMBL
Pfam BetaGal_ABD_1 UniProtKB/TrEMBL
  BetaGal_gal-bd UniProtKB/TrEMBL
  Glyco_hydro_35 UniProtKB/TrEMBL
PIRSF B-gal UniProtKB/TrEMBL
PRINTS GLHYDRLASE35 UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F35 UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
  SSF51445 UniProtKB/TrEMBL
UniProt A0A287CU15 ENTREZGENE, UniProtKB/TrEMBL
  I3NGJ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 LOC101977326  beta-galactosidase-1-like protein 2  LOC110599408  beta-galactosidase-1-like protein 3  Data merged from RGD:13196779 737654 PROVISIONAL