Nudt19 (nudix hydrolase 19) - Rat Genome Database

Name: Nudt19
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Nudt19 (nudix hydrolase 19) Ictidomys tridecemlineatus

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Symbol:

Nudt19

Name:

nudix hydrolase 19

RGD ID:

12623031

Description:

ENCODES a protein that exhibits magnesium ion binding (ortholog); INVOLVED IN butyryl-CoA catabolic process (ortholog); coenzyme A catabolic process (ortholog); malonyl-CoA catabolic process (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog); FOUND IN mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nucleoside diphosphate-linked moiety X motif 19; nucleoside diphosphate-linked moiety X motif 19, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUDT19 (nudix hydrolase 19)	NCBI	Ortholog
Mus musculus (house mouse):	Nudt19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nudt19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nudt19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUDT19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUDT19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUDT19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUDT19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nudt19 (nudix hydrolase 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	8,619,119 - 8,627,654 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936570	3,018,465 - 3,026,763 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary spastic paraplegia 75 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

butyryl-CoA catabolic process (ISO)

coenzyme A catabolic process (ISO)

malonyl-CoA catabolic process (ISO)

medium-chain fatty-acyl-CoA catabolic process (ISO)

propionyl-CoA metabolic process (ISO)

succinyl-CoA catabolic process (ISO)

Cellular Component

mitochondrion (IEA)

Molecular Function

hydrolase activity (IEA)

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (IEA)

magnesium ion binding (ISO)

metal ion binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Nudt19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	8,619,119 - 8,627,654 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936570	3,018,465 - 3,026,763 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUDT19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	32,691,821 - 32,713,792 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	32,691,821 - 32,713,792 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	33,182,727 - 33,204,698 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	37,874,707 - 37,896,542 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	29,876,499 - 29,898,331 (+)	NCBI		Celera
Cytogenetic Map	19	q13.11	NCBI
HuRef	19	29,686,126 - 29,707,981 (+)	NCBI		HuRef
CHM1_1	19	33,184,152 - 33,205,990 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	35,210,556 - 35,232,527 (+)	NCBI		T2T-CHM13v2.0

Nudt19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	35,246,610 - 35,258,345 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	35,246,610 - 35,255,729 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	35,547,185 - 35,558,643 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	35,547,185 - 35,556,304 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	36,332,204 - 36,340,947 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	35,243,506 - 35,264,607 (-)	NCBI		MGSCv36	mm8
Celera	7	30,676,044 - 30,684,865 (-)	NCBI		Celera
Cytogenetic Map	7	B2	NCBI
cM Map	7	21.37	NCBI

Nudt19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,351,373 - 97,362,969 (-)	NCBI		GRCr8
mRatBN7.2	1	88,214,475 - 88,226,072 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	88,214,480 - 88,226,207 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	93,620,296 - 93,630,893 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	102,086,242 - 102,096,839 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	95,378,579 - 95,389,176 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	91,820,317 - 91,845,215 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	91,820,342 - 91,832,058 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	92,948,062 - 92,959,663 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	88,080,929 - 88,092,526 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	88,159,041 - 88,170,637 (-)	NCBI
Celera	1	82,564,309 - 82,575,907 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Nudt19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	5,280,804 - 5,292,483 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	5,284,650 - 5,291,706 (-)	NCBI	ChiLan1.0	ChiLan1.0

NUDT19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	38,661,663 - 38,685,062 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	40,660,329 - 40,682,291 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	29,610,390 - 29,632,778 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	38,359,670 - 38,378,728 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

NUDT19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	119,305,855 - 119,311,875 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	118,705,812 - 118,711,764 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	119,906,758 - 119,912,764 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	119,907,508 - 119,912,764 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	119,469,968 - 119,476,066 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	119,090,478 - 119,096,132 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	120,150,084 - 120,156,088 (-)	NCBI		UU_Cfam_GSD_1.0

NUDT19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	42,574,071 - 42,583,926 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	42,574,064 - 42,583,473 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	38,183,645 - 38,191,730 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUDT19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	27,744,236 - 27,766,000 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	27,745,339 - 27,765,881 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	5,328,353 - 5,350,037 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nudt19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,625,032 - 7,637,185 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	7,624,932 - 7,637,070 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005330675 ⟹ XP_005330732

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	8,619,119 - 8,627,654 (+)	NCBI
SpeTri2.0	NW_004936570	3,018,465 - 3,026,763 (-)	NCBI

Sequence:

show sequence

TGGAGCGCCTGGCTCACGCCGTTCGGGCGCGGTGGCAGTCGGCGCTTCGACACGGCATTCTTCC
TGTGCTGCCTGAGCGAGCCGCCGCCGGTCTATCCCGACCTGTCGGAGGTGGTGGGCTGTCAGTG
GTCTTCTCCATCAGAGGCAACTAAAAGTTTCATATCAAAAGAAATTTGGCTGGCGCCCCCACAG
TTCTACGAAGTAAGACGACTTGAAAACTTTGCCTCTCTGTCTGACCTGCATAAATTTTGTTTGG
ATCGTGCCTTAGAAGAGGTTGAACGGTGGCTGCCGATTACATATTTAACTGCTGATGGGATGCT
CCAGCTTTTACCTGGAGATGAGCTGTACCTAGAAGATTCAGACTATGTAGAAAAGTCTTTGTCT
ACTGAAAAAACAACTAAAGAAATCATGAAGGAAGGCAAGAAATTTCACCGAATAGTGATACACA
ATCGCCATCTTTATGAGGTCCATGTGACTGTTCAGTCAAAGTGTAAACATGTTTATCCTAAGAA
CTACATAATAAGTAAGAGCCATTTGTAGGGAGCTACTTCTAAATTGGTTGACTAAAGTTGTTTG
AAAATTATATAACTTGGTGCCTGTGCAAGCTATCATGGTGTGTTTCTTCTTTTAAGTGTGTTGT
GGAGCTCTCTTGCTTATTTTATTCTTTTAATCATTCAGTATGCAGTGAGTATAAAATTGATATG
TTACCAAAATGAGAAAAAAAAAGTCACAAGGGGCCCTACTTCTGTATTGTTTTATTAGCCTAAA
AGTTTAAATAAGATGTTCTATTGCCATTGTTTCAATTGTCTCACATATTAGCATTTTTCCTGAT
GTGCTTTGGAAGTTGAACCATGAATTTCTTAGACTTTCTGCTGAAATTAATTTAAGAGTGCCTG
ACTGGATGGCAAACACTAGACTGAGACACCCTTCAAGTGATAATGCCATTGTTTTCTTGCTATT
GTCTTTAGCTTGATTACTAAGATCCAATCTGTTTAAAACCAAGTGGCATTAGTATAATATATTA
TGTTTTCCAAATTGGAAATCTATTTTAGTTAATATTTTAAAGAAGTATGAAGCCATACAAACCT
ATCAACTTTTTATGTTATTAAGTGCTGGTTAATAAATACAGAGAGAGAATGTTAAATTAGGTTT
ATTTTCAGTATGGTTAATATAGATAGTGTTTTCACTTCCTTTAAAGAGGTATAATTTTTTTGCT
GATTAAAGGTGGGAATTAATAGTTAAAAACACCAATTCTTTTTCATTATATTTGACTATATTAT
GCATAACACAATAGATTTCTTATTTTCTGAAATTTCTTAGTTTTTCTAACAACCAAATAAAGGC
AATGATAAAACTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005330732	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000030459.1
GenBank Protein	KAG3255783	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330732 ⟸ XM_005330675
- UniProtKB:	A0A287DA96 (UniProtKB/TrEMBL)
- Sequence:	show sequence WSAWLTPFGRGGSRRFDTAFFLCCLSEPPPVYPDLSEVVGCQWSSPSEATKSFISKEIWLAPPQ FYEVRRLENFASLSDLHKFCLDRALEEVERWLPITYLTADGMLQLLPGDELYLEDSDYVEKSLS TEKTTKEIMKEGKKFHRIVIHNRHLYEVHVTVQSKCKHVYPKNYIISKSHL hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000031724	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000032154.1	UniProtKB/TrEMBL
Gene3D-CATH	Nucleoside Triphosphate Pyrophosphohydrolase	UniProtKB/TrEMBL
InterPro	NUDT19	UniProtKB/TrEMBL
NCBI Gene	Nudt19	ENTREZGENE
PANTHER	NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 19	UniProtKB/TrEMBL
	PTHR12318	UniProtKB/TrEMBL
UniProt	A0A287DA96	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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