LOC101957991 (HLA class II histocompatibility antigen, DQ alpha 2 chain-like) - Rat Genome Database

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Gene: LOC101957991 (HLA class II histocompatibility antigen, DQ alpha 2 chain-like) Ictidomys tridecemlineatus
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Symbol: LOC101957991
Name: HLA class II histocompatibility antigen, DQ alpha 2 chain-like
RGD ID: 12596633
Description: INVOLVED IN antigen processing and presentation (inferred); immune response (inferred); regulation of leukocyte cell-cell adhesion (inferred); FOUND IN membrane (inferred); MHC class II protein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494637,753,818 - 37,759,695 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004937082171,973 - 177,850 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013366267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013366267   ⟹   XP_013221721
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494637,753,818 - 37,759,695 (+)NCBI
SpeTri2.0NW_004937082171,973 - 177,850 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013221721 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020346.2
Reference Protein Sequences
RefSeq Acc Id: XP_013221721   ⟸   XM_013366267
- UniProtKB: I3N7K0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019853 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027513.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_II_a/b_N UniProtKB/TrEMBL
  MHC_II_a_N UniProtKB/TrEMBL
NCBI Gene LOC101957991 ENTREZGENE
PANTHER HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ ALPHA 1 CHAIN UniProtKB/TrEMBL
  MHC CLASS II-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt I3N7K0 ENTREZGENE, UniProtKB/TrEMBL