Tmem247 (transmembrane protein 247) - Rat Genome Database

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Gene: Tmem247 (transmembrane protein 247) Ictidomys tridecemlineatus
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Symbol: Tmem247
Name: transmembrane protein 247
RGD ID: 12579221
Description: ASSOCIATED WITH Lynch syndrome (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629234,332,665 - 34,354,278 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365085,778,529 - 5,782,802 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365085,761,274 - 5,782,802 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem247SquirrelLynch syndrome  ISOTMEM247 (Homo sapiens)8554872ClinVar Annotator: match by term: Lynch syndromeClinVarPMID:28492532


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem247Squirrelendoplasmic reticulum located_inIEAUniProtKB:Q497K7 and ensembl:ENSMUSP00000039338150520179 EnsemblGO_REF:0000107
Tmem247Squirrelendoplasmic reticulum located_inIEAPANTHER:PTN002195825150520179 TreeGrafterGO_REF:0000118
Tmem247Squirrelmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

PMID:30032202  



Tmem247
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629234,332,665 - 34,354,278 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365085,778,529 - 5,782,802 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365085,761,274 - 5,782,802 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM247
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38246,479,565 - 46,484,425 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl246,479,565 - 46,484,425 (+)EnsemblGRCh38hg38GRCh38
GRCh37246,706,704 - 46,711,564 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36246,539,968 - 46,572,085 (+)NCBINCBI36Build 36hg18NCBI36
Celera246,545,389 - 46,550,250 (+)NCBICelera
Cytogenetic Map2p21ENTREZGENE
HuRef246,444,265 - 46,449,164 (+)ENTREZGENEHuRef
CHM1_1246,637,071 - 46,641,931 (+)NCBICHM1_1
T2T-CHM13v2.0246,484,583 - 46,489,482 (+)NCBIT2T-CHM13v2.0
Tmem247
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,224,776 - 87,229,795 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1787,224,776 - 87,229,802 (+)EnsemblGRCm39 Ensembl
GRCm381786,917,348 - 86,922,367 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1786,917,348 - 86,922,374 (+)EnsemblGRCm38mm10GRCm38
MGSCv371787,316,688 - 87,321,708 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361786,824,745 - 86,830,808 (+)NCBIMGSCv36mm8
Celera1791,303,644 - 91,308,661 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1756.9NCBI
Tmem247
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8613,449,515 - 13,454,462 (-)NCBIGRCr8
mRatBN7.267,696,517 - 7,701,464 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl67,696,512 - 7,701,464 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx67,975,057 - 7,980,024 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.068,284,470 - 8,289,437 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.067,811,592 - 7,816,559 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0610,483,308 - 10,488,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl610,483,308 - 10,488,253 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0620,472,330 - 20,477,277 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera67,431,529 - 7,436,476 (-)NCBICelera
Cytogenetic Map6q12NCBI
Tmem247
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544113,404,855 - 13,409,919 (+)NCBIChiLan1.0ChiLan1.0
TMEM247
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21279,905,727 - 79,910,796 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A79,909,695 - 79,914,764 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A46,595,036 - 46,600,085 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A47,526,303 - 47,534,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A47,526,365 - 47,531,213 (+)Ensemblpanpan1.1panPan2
TMEM247
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11048,713,464 - 48,719,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1048,713,535 - 48,720,810 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1048,567,967 - 48,574,097 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01049,584,575 - 49,590,708 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1049,584,647 - 49,590,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11049,292,713 - 49,298,841 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01049,583,009 - 49,593,801 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01049,765,925 - 49,776,722 (+)NCBIUU_Cfam_GSD_1.0
TMEM247
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl394,061,835 - 94,066,606 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1394,061,977 - 94,067,024 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23100,146,679 - 100,151,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM247
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11460,725,734 - 60,778,635 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1460,726,251 - 60,731,335 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604551,123,370 - 51,143,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem247
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473827,949,133 - 27,966,461 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005324554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040271320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000001363   ⟹   ENSSTOP00000001223
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365085,778,529 - 5,782,802 (-)Ensembl
RefSeq Acc Id: XM_040271320   ⟹   XP_040127254
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629234,332,665 - 34,354,278 (-)NCBI
Protein RefSeqs XP_040127254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001223.3
GenBank Protein KAG3267372 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040127254   ⟸   XM_040271320
Ensembl Acc Id: ENSSTOP00000001223   ⟸   ENSSTOT00000001363



Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000001366 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001363.3 UniProtKB/TrEMBL
InterPro TMEM247 UniProtKB/TrEMBL
NCBI Gene Tmem247 ENTREZGENE
PANTHER PTHR36691 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 247 UniProtKB/TrEMBL
Pfam TMEM247 UniProtKB/TrEMBL
UniProt I3LYG0_ICTTR UniProtKB/TrEMBL