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Gene: Cept1 (choline/ethanolamine phosphotransferase 1) Ictidomys tridecemlineatus

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Symbol:

Cept1

Name:

choline/ethanolamine phosphotransferase 1

RGD ID:

12571018

Description:

ENCODES a protein that exhibits diacylglycerol cholinephosphotransferase activity (inferred); ethanolaminephosphotransferase activity (inferred); phosphotransferase activity, for other substituted phosphate groups (inferred); INVOLVED IN phosphatidylcholine biosynthetic process (ortholog); PARTICIPATES IN plasmalogen biosynthetic pathway; plasmalogen metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

choline/ethanolamine phosphotransferase 1, transcript variant X1; choline/ethanolamine phosphotransferase 1, transcript variant X2; choline/ethanolaminephosphotransferase 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	17,564,126 - 17,601,131 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936704	2,512,273 - 2,550,135 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936704	2,513,064 - 2,550,133 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CDP-choline pathway (IEA)

lipid biosynthetic process (IEA)

phosphatidylcholine biosynthetic process (IEA,ISO)

phosphatidylethanolamine biosynthetic process (IEA)

phospholipid biosynthetic process (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA,ISO)

Golgi apparatus (IEA)

membrane (IEA)

nuclear membrane (IEA)

nucleus (IEA)

Molecular Function

diacylglycerol cholinephosphotransferase activity (IEA)

ethanolaminephosphotransferase activity (IEA)

phosphotransferase activity, for other substituted phosphate groups (IEA)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

plasmalogen biosynthetic pathway (ISO)

plasmalogen metabolic pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Cept1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	17,564,126 - 17,601,131 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936704	2,512,273 - 2,550,135 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936704	2,513,064 - 2,550,133 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEPT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	111,139,499 - 111,185,104 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	111,139,479 - 111,185,104 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	111,682,121 - 111,727,726 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	111,483,772 - 111,529,247 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	111,394,874 - 111,439,766	NCBI
Celera	1	109,929,250 - 109,974,702 (+)	NCBI		Celera
Cytogenetic Map	1	p13.3	NCBI
HuRef	1	109,553,819 - 109,599,280 (+)	NCBI		HuRef
CHM1_1	1	111,797,394 - 111,842,864 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	111,154,313 - 111,199,909 (+)	NCBI		T2T-CHM13v2.0

Cept1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	106,409,576 - 106,455,118 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	106,409,576 - 106,455,118 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	106,502,260 - 106,547,802 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	106,502,260 - 106,547,802 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	106,305,178 - 106,350,679 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	106,630,316 - 106,675,817 (-)	NCBI		MGSCv36	mm8
Celera	3	108,834,197 - 108,879,672 (-)	NCBI		Celera
Cytogenetic Map	3	F2.3	NCBI
cM Map	3	46.49	NCBI

Cept1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	196,682,455 - 196,724,430 (-)	NCBI		GRCr8
mRatBN7.2	2	193,994,220 - 194,036,141 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	193,993,447 - 194,035,578 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	201,586,728 - 201,627,840 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	199,492,994 - 199,534,088 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	194,309,952 - 194,351,042 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	209,118,140 - 209,162,071 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	209,118,922 - 209,160,653 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	228,527,799 - 228,569,927 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	201,801,921 - 201,843,259 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	201,764,676 - 201,806,013 (-)	NCBI
Celera	2	186,676,674 - 186,717,806 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Cept1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	14,704,269 - 14,743,765 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	14,704,269 - 14,743,765 (+)	NCBI	ChiLan1.0	ChiLan1.0

CEPT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	115,858,503 - 115,903,655 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	115,007,386 - 115,052,522 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	113,785,264 - 113,830,648 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	126,516,554 - 126,561,990 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	126,514,879 - 126,561,850 (-)	Ensembl	panpan1.1		panPan2

CEPT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	40,838,584 - 40,869,606 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	40,839,219 - 40,869,582 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	43,616,675 - 43,654,508 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	41,170,608 - 41,208,479 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	41,170,501 - 41,208,405 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	40,891,866 - 40,929,624 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	40,861,830 - 40,899,641 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	41,297,120 - 41,334,956 (-)	NCBI		UU_Cfam_GSD_1.0

CEPT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	109,142,713 - 109,183,324 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	109,142,712 - 109,185,497 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	119,320,247 - 119,552,730 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CEPT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	22,394,045 - 22,434,600 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	22,394,722 - 22,426,512 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	36,042,291 - 36,083,063 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cept1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	6,922,981 - 6,963,250 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	6,922,930 - 6,965,718 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005734785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000011071 ⟹ ENSSTOP00000009932

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936704	2,519,975 - 2,549,364 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000026492 ⟹ ENSSTOP00000019221

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936704	2,519,975 - 2,534,496 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000033893 ⟹ ENSSTOP00000025479

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936704	2,512,273 - 2,550,135 (+)	Ensembl

RefSeq Acc Id:

XM_005338129 ⟹ XP_005338186

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	17,564,126 - 17,601,131 (-)	NCBI
SpeTri2.0	NW_004936704	2,513,064 - 2,550,133 (+)	NCBI

Sequence:

show sequence

GTCGTGAAAGTGCTGCCGCCGATCACTCATCCAGTCGGCAGGAGTCGAAGTTGTTATTTCTAGG
GGTGTGCTTGTTGAGGTCGGGGGAAATACGAATCACAAAAAAACTACAAGACAAGGTTAATTGT
TATTTCCAAATAAAAGAAAACCAAGATCCATGAGTGGGCATCGGCCAACAAGGAAACGATGTGG
AGATTCTCACCCAGAGTCCCCCATGGGCTTTGGGCATATGAGTACTACAGGGTGTGTATTAAAT
AAGTTGTTTCAGTTACCTACACCACCATTGTCAAGACACCAACTAAAGCGGCTAGAAGAACACA
GATATCAAAGTGCTGGACGGTCCCTGCTTGAGCCCTTAATGCAAGGATATTGGGAATGGCTAGT
AGGAAGAGTTCCATCCTGGATTGCACCAAATCTCATCACCATCATTGGACTATCAATAAACATC
TGTACAACTATTTTATTAGTCTTCTACTGCCCTACAGCTACAGAGCAGGCACCTCTGTGGGCAT
ATATTGCTTGTGCATGTGGCCTTTTCATTTACCAGTCTTTGGACGCTATAGATGGGAAACAGGC
AAGAAGAACCAATAGTAGTACTCCTTTGGGAGAACTTTTTGATCATGGTTGTGATTCATTATCA
ACAGTTTTTGTGGTTCTTGGAACTTGTATTTCGGTACAACTTGGAACAAATCCTGATTGGATGT
TTTTTTGTTGTTTTGCTGGGACATTCATGTTCTATTGTGCACACTGGCAAACATATGTTTCTGG
GACATTACGATTTGGAATAATTGATGTGACTGAAGTGCAAATCTTCATAATAATCATGCATTTG
CTGGCAGTGATTGGAGGACCACCTTTTTGGCAATCTATGATTCCAGTGCTGAATATTCAAATGA
AAATTTTTCCTGCACTTTGTACTGTAGCAGGGACCATATTTTCCTGTACAAATTACTTCCGTGT
AATCTTCACAGGTGGTGTTGGCAAAAATGGATCAACAATAGCAGGAACAAGTGTCCTTTCTCCT
TTTCTCCATATTGGATCAGTGATTGCATTAGCTGTAATGATCTACAAGAAATCAGCAGTTCAGC
TTTTTGAGAAGCATCCCTGTCTTTATATACTGACATTTGGTTTTGTATCAGCTAAAATCACAAA
TAAGCTTGTGGTTGCACACATGACGAAAAGTGAAATGCATTTGCATGATACAGCTTTCATAGGT
CCAGCACTTTTGTTTCTGGATCAGTATTTTAACAGCTTTATTGATGAGTATATTGTACTTTGGA
TTGCCTTGGTCTTCTCTTTCTTTGATTTGATCCGCTACTGTGTCAGTGTTTGCAATCAGATTGC
GTCTCACCTGCACATACATGTCTTCAGAATCAAGGTCTCTACAGCTCATTCTAATCATCATTAA
TTAGTTGGTGTTATATAGGAAACTCATGTTTTCTGCAGGAAAGAATCTGAACATATTAAGAAGA
ATGGGGGTGAAAAAGAACAAATATAATTTATAATCAATGTTATGTAACTTTTATTCTTTGTTAC
TGGTAACACTCCCTAACTATCCTGTGTGAGAATGGGAATTTCAAGTCCCATCCTGTAAATTGTA
CATGTCATCATACAGGGTTTGGCCCAAGAAAGCATGCAGGAAAAAATGCCATGTGTTTGTAATT
ATCCTGGCTTCAGAATAATATTGTCATGGGGAGCAGGTCCCCAGTGAAGGAGATTTCTAATGTA
GAATATTTGCAGGCCAAAAGATGGTTGTTTTATAATTTTAACAAATTATCATCTTTTAGTAACA
CCCTTGTTTATGTCTTCTCAAGCTTTCTTTACTAAAGAGCTCAGCTTGTGACACAGATACATCC
CACTAGCTTGTGAGGTGAAATGAGTGATAAAGACCTGGAATTTGGGTTGAAAGGTTTCCTATCT
TCACATTGTTGAGGATGTAATTTTTTTATTGCTCAAGAAATGGTATCTCTTGTGGGCTTGGGAA
ATCCTATTAGCATGCAGAATAATGTGGTAACTTTGTCGATCCATTTTATTTTTTTAAATAAATA
AATGATCTAAAAGCCAGCTTTTTCTCAAGTTTTATTCAATGGGGAGATAAACTAAGTTTAATGT
CATTTTTTAAAATTTAAGGAAAATTTATTCCTGTTCTTTAATAAATAAGGAAATTTGGTCAGCT
G

hide sequence

RefSeq Acc Id:

XM_021735146 ⟹ XP_021590821

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	17,564,126 - 17,600,990 (-)	NCBI
SpeTri2.0	NW_004936704	2,513,232 - 2,550,133 (+)	NCBI

Sequence:

show sequence

AGAGGACTGGATGCTCAGGGGGAAATACGAATCACAAAAAAACTACAAGACAAGGTTAATTGTT
ATTTCCAAATAAAAGAAAACCAAGATCCATGAGTGGGCATCGGCCAACAAGGAAACGATGTGGA
GATTCTCACCCAGAGTCCCCCATGGGCTTTGGGCATATGAGTACTACAGGGTGTGTATTAAATA
AGTTGTTTCAGTTACCTACACCACCATTGTCAAGACACCAACTAAAGCGGCTAGAAGAACACAG
ATATCAAAGTGCTGGACGGTCCCTGCTTGAGCCCTTAATGCAAGGATATTGGGAATGGCTAGTA
GGAAGAGTTCCATCCTGGATTGCACCAAATCTCATCACCATCATTGGACTATCAATAAACATCT
GTACAACTATTTTATTAGTCTTCTACTGCCCTACAGCTACAGAGCAGGCACCTCTGTGGGCATA
TATTGCTTGTGCATGTGGCCTTTTCATTTACCAGTCTTTGGACGCTATAGATGGGAAACAGGCA
AGAAGAACCAATAGTAGTACTCCTTTGGGAGAACTTTTTGATCATGGTTGTGATTCATTATCAA
CAGTTTTTGTGGTTCTTGGAACTTGTATTTCGGTACAACTTGGAACAAATCCTGATTGGATGTT
TTTTTGTTGTTTTGCTGGGACATTCATGTTCTATTGTGCACACTGGCAAACATATGTTTCTGGG
ACATTACGATTTGGAATAATTGATGTGACTGAAGTGCAAATCTTCATAATAATCATGCATTTGC
TGGCAGTGATTGGAGGACCACCTTTTTGGCAATCTATGATTCCAGTGCTGAATATTCAAATGAA
AATTTTTCCTGCACTTTGTACTGTAGCAGGGACCATATTTTCCTGTACAAATTACTTCCGTGTA
ATCTTCACAGGTGGTGTTGGCAAAAATGGATCAACAATAGCAGGAACAAGTGTCCTTTCTCCTT
TTCTCCATATTGGATCAGTGATTGCATTAGCTGTAATGATCTACAAGAAATCAGCAGTTCAGCT
TTTTGAGAAGCATCCCTGTCTTTATATACTGACATTTGGTTTTGTATCAGCTAAAATCACAAAT
AAGCTTGTGGTTGCACACATGACGAAAAGTGAAATGCATTTGCATGATACAGCTTTCATAGGTC
CAGCACTTTTGTTTCTGGATCAGTATTTTAACAGCTTTATTGATGAGTATATTGTACTTTGGAT
TGCCTTGGTCTTCTCTTTCTTTGATTTGATCCGCTACTGTGTCAGTGTTTGCAATCAGATTGCG
TCTCACCTGCACATACATGTCTTCAGAATCAAGGTCTCTACAGCTCATTCTAATCATCATTAAT
TAGTTGGTGTTATATAGGAAACTCATGTTTTCTGCAGGAAAGAATCTGAACATATTAAGAAGAA
TGGGGGTGAAAAAGAACAAATATAATTTATAATCAATGTTATGTAACTTTTATTCTTTGTTACT
GGTAACACTCCCTAACTATCCTGTGTGAGAATGGGAATTTCAAGTCCCATCCTGTAAATTGTAC
ATGTCATCATACAGGGTTTGGCCCAAGAAAGCATGCAGGAAAAAATGCCATGTGTTTGTAATTA
TCCTGGCTTCAGAATAATATTGTCATGGGGAGCAGGTCCCCAGTGAAGGAGATTTCTAATGTAG
AATATTTGCAGGCCAAAAGATGGTTGTTTTATAATTTTAACAAATTATCATCTTTTAGTAACAC
CCTTGTTTATGTCTTCTCAAGCTTTCTTTACTAAAGAGCTCAGCTTGTGACACAGATACATCCC
ACTAGCTTGTGAGGTGAAATGAGTGATAAAGACCTGGAATTTGGGTTGAAAGGTTTCCTATCTT
CACATTGTTGAGGATGTAATTTTTTTATTGCTCAAGAAATGGTATCTCTTGTGGGCTTGGGAAA
TCCTATTAGCATGCAGAATAATGTGGTAACTTTGTCGATCCATTTTATTTTTTTAAATAAATAA
ATGATCTAAAAGCCAGCTTTTTCTCAAGTTTTATTCAATGGGGAGATAAACTAAGTTTAATGTC
ATTTTTTAAAATTTAAGGAAAATTTATTCCTGTTCTTTAATAAATAAGGAAATTTGGTCAGCTG

hide sequence

RefSeq Acc Id:

XM_040287408 ⟹ XP_040143342

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	17,564,126 - 17,600,700 (-)	NCBI

RefSeq Acc Id:

XR_005734785

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	17,564,126 - 17,594,245 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005338186	(Get FASTA)	NCBI Sequence Viewer
	XP_021590821	(Get FASTA)	NCBI Sequence Viewer
	XP_040143342	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009932.3
	ENSSTOP00000019221.2
	ENSSTOP00000025479.1
GenBank Protein	KAG3281279	(Get FASTA)	NCBI Sequence Viewer
	KAG3281280	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005338186 ⟸ XM_005338129

- UniProtKB:

A0A287CW39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGHRPTRKRCGDSHPESPMGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAGRSLL
EPLMQGYWEWLVGRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYIACACGLFI
YQSLDAIDGKQARRTNSSTPLGELFDHGCDSLSTVFVVLGTCISVQLGTNPDWMFFCCFAGTFM
FYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIPVLNIQMKIFPALCTVA
GTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVIALAVMIYKKSAVQLFEKHPCLYI
LTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLDQYFNSFIDEYIVLWIALVFSFFDL
IRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH

hide sequence

RefSeq Acc Id:

XP_021590821 ⟸ XM_021735146

- UniProtKB:

A0A287CW39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGHRPTRKRCGDSHPESPMGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAGRSLL
EPLMQGYWEWLVGRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYIACACGLFI
YQSLDAIDGKQARRTNSSTPLGELFDHGCDSLSTVFVVLGTCISVQLGTNPDWMFFCCFAGTFM
FYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIPVLNIQMKIFPALCTVA
GTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVIALAVMIYKKSAVQLFEKHPCLYI
LTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLDQYFNSFIDEYIVLWIALVFSFFDL
IRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH

hide sequence

RefSeq Acc Id:	XP_040143342 ⟸ XM_040287408
- UniProtKB:	A0A287CW39 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000019221 ⟸ ENSSTOT00000026492

Ensembl Acc Id:

ENSSTOP00000025479 ⟸ ENSSTOT00000033893

Ensembl Acc Id:

ENSSTOP00000009932 ⟸ ENSSTOT00000011071

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000027447	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011071.3	UniProtKB/TrEMBL
	ENSSTOT00000026492.2	UniProtKB/TrEMBL
	ENSSTOT00000033893.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.1760	UniProtKB/TrEMBL
InterPro	CDP-OH_P_trans	UniProtKB/TrEMBL
	CDP-OH_PTrfase_TM_dom	UniProtKB/TrEMBL
	CDP_ALCOHOL_P_TRANSF_CS	UniProtKB/TrEMBL
	CHOPT	UniProtKB/TrEMBL
NCBI Gene	Cept1	ENTREZGENE
PANTHER	CHOLINE/ETHANOLAMINEPHOSPHOTRANSFERASE 1	UniProtKB/TrEMBL
	PTHR10414	UniProtKB/TrEMBL
Pfam	CDP-OH_P_transf	UniProtKB/TrEMBL
PIRSF	CHOPT	UniProtKB/TrEMBL
PROSITE	CDP_ALCOHOL_P_TRANSF	UniProtKB/TrEMBL
	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
UniProt	A0A287CW39	ENTREZGENE, UniProtKB/TrEMBL
	I3MGM3_ICTTR	UniProtKB/TrEMBL
	I3N4C5_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB