LOC101975669 (UL16-binding protein 1-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC101975669 (UL16-binding protein 1-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101975669
Name: UL16-binding protein 1-like
RGD ID: 12567918
Description: INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); immune response (inferred); FOUND IN external side of plasma membrane (inferred); extracellular space (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NKG2D ligand 1-like
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946135,671,788 - 135,681,050 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364892,926,371 - 2,927,238 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021723881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021723881   ⟹   XP_021579556
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946135,671,788 - 135,681,050 (-)NCBI
SpeTri2.0NW_0049364892,926,371 - 2,927,238 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021579556 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001240.3
RefSeq Acc Id: XP_021579556   ⟸   XM_021723881
- UniProtKB: I3LYH2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
MHC class I-like antigen recognition-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001385 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001383.3 UniProtKB/TrEMBL
Gene3D-CATH MHC class I-like antigen recognition-like UniProtKB/TrEMBL
InterPro MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
NCBI Gene LOC101975669 ENTREZGENE
PANTHER MHC CLASS I-RELATED UniProtKB/TrEMBL
  UL16-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam MHC_I UniProtKB/TrEMBL
Superfamily-SCOP MHC antigen-recognition domain UniProtKB/TrEMBL
UniProt I3LYH2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101975669  UL16-binding protein 1-like  LOC101975669  NKG2D ligand 1-like  Symbol and/or name change 5135510 APPROVED