Prr19 (proline rich 19) - Rat Genome Database

Name: Prr19
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Prr19 (proline rich 19) Ictidomys tridecemlineatus

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Symbol:

Prr19

Name:

proline rich 19

RGD ID:

12564809

Description:

ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN chromosome (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proline-rich protein 19

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRR19 (proline rich 19)	NCBI	Ortholog
Mus musculus (house mouse):	Prr19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Prr19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prr19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRR19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRR19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRR19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRR19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prr19 (proline rich 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	15,861,670 - 15,865,625 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	209,083 - 210,247 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	209,013 - 210,326 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

craniosynostosis (ISO)

Diamond-Blackfan anemia (ISO)

maple syrup urine disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

chromosome (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Prr19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	15,861,670 - 15,865,625 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	209,083 - 210,247 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	209,013 - 210,326 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRR19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	42,302,132 - 42,310,814 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	42,302,098 - 42,310,814 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	42,806,284 - 42,814,966 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	47,498,124 - 47,506,813 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	39,607,080 - 39,615,768 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	39,236,425 - 39,245,114 (+)	NCBI		HuRef
CHM1_1	19	42,807,935 - 42,816,636 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	45,121,505 - 45,130,199 (+)	NCBI		T2T-CHM13v2.0

Prr19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	25,000,784 - 25,003,565 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	25,000,836 - 25,003,557 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	25,301,359 - 25,304,140 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	25,301,411 - 25,304,132 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	26,086,378 - 26,089,152 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	25,010,119 - 25,012,893 (+)	NCBI		MGSCv36	mm8
Celera	7	19,916,403 - 19,919,177 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.74	NCBI

Prr19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	90,012,307 - 90,017,988 (+)	NCBI		GRCr8
mRatBN7.2	1	80,884,529 - 80,890,712 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	80,887,151 - 80,890,168 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	86,279,368 - 86,282,385 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	94,830,512 - 94,833,528 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	88,035,145 - 88,038,162 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	82,167,027 - 82,172,636 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	82,169,620 - 82,172,636 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	83,433,779 - 83,436,807 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	80,577,805 - 80,578,988 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	75,330,058 - 75,333,073 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Prr19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955555	605,333 - 610,058 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955555	605,333 - 610,104 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRR19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	48,407,301 - 48,415,762 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	50,275,899 - 50,284,394 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	39,189,839 - 39,198,524 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	47,780,843 - 47,789,689 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	47,780,843 - 47,789,689 (+)	Ensembl	panpan1.1		panPan2

PRR19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	112,074,045 - 112,076,036 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	112,073,031 - 112,075,316 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	111,500,212 - 111,502,203 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	112,686,667 - 112,688,658 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	112,686,709 - 112,687,932 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	112,240,895 - 112,242,886 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	111,876,841 - 111,878,832 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	112,803,371 - 112,805,362 (-)	NCBI		UU_Cfam_GSD_1.0

PRR19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	49,630,832 - 49,635,831 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	49,630,831 - 49,635,831 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	45,525,227 - 45,529,312 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRR19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	36,512,360 - 36,515,518 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	14,759,983 - 14,761,354 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prr19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	450,222 - 452,441 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	450,196 - 454,604 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000024733 ⟹ ENSSTOP00000023494

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936706	209,083 - 210,247 (-)	Ensembl

RefSeq Acc Id:

XM_005338152 ⟹ XP_005338209

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,861,670 - 15,865,625 (-)	NCBI
SpeTri2.0	NW_004936706	209,013 - 210,326 (-)	NCBI

Sequence:

show sequence

TCAACTATCATTTCTCACTTTACTACTACTTGACTTACCTGCATCTGATGACCAGCCTATTTTC
ATCTTTCAGGACATTATGGACTCCCGGCGGCCAGCACCTCAGCCTTTCCAGCAACCTGAGAAAC
CTGGCCGTGTCCGCCGACGGAAGACCAGGAGGGAGAGAAATGCCCTTGTGGGCAGCCGCCGGGG
GAGCCGTCAGGATCTTATGGCTCCCTGGAATCCCGTGGCCCCCCGGGATCCTGTGGCCCCTTCT
GCCTCCAAGCTTGTGGTCATAACTCAGGGCCGGCTGAGCCGGGAGCACCGGGGTCTCTTCAACC
ATGAGGTGAAATCTCTGGATGTGGCCCGATTGCTTAGCAGTGGGTCCCTGGAATCAGGAACTCT
CTTTCTCCAAACCAAACCCTCCCCAAACCCAGGCAGAGTCCAAGAACCAGAACAGTCAAAGGGC
AAGGAGAATCAGGTGCCTGGAGACTTGGGTCCAGGCCCCCCACATTCCCCAGAGCTCCCTTGCT
TGGGGAAACTGCTGGGTGAGCTGCAGTGCCAGCTGATTCTGCCACAGGCCTTCCCCAGGAGGAA
CCTGGTACAGGAGGCCAGGGATATCATCGTGGGAAACTTACAGGCCTGCCATGGCTGTGTACCT
GACCTTTCCCTGGTGCTCCGAGGCTGCCACCCACCCTTGCCAGGGACCAAGCCTGGAATCTCTG
AGAAACAAAGGATGACACCCTCCTGGATCAACAGCCCTGAGCAAGCCCCAAGGGAAGAGAGGCA
AAGGAGACTTCGGGGAACAAAGGAGCTCACCTTTTCCATGCCTCATACCTCCAGCCCTCCCGTT
ACACACAGGGTGAGCCTGGTGCCACCAGGAGGTCCCTGGCCACCCACTTTGCCCTCCTTGCCTT
CACCATCTGGGGCAGCCTGGGGCCCTCCAACAGCTTTTGACCTACTGAAAAGCATCTGGCTAGT
AGCCACACCACCCCTTCCCAGACCCTGGGCTGTCGGCCCACCTCAGCCTCTGCCTCAGCCACTA
TCACCCTTGTTGCCCAGAACCTCTGCTCTGGACTGGAGCCCCAGCCCCCTTGCCCCACTGCCCA
GCCTCTCCTGGGTGGTAGCTCAGAGCAGTCCGGAAGCCTGGTCCTTTCCACCCATGAGACTGTA
CTGAGAGTGCTGAGGCCAGGATTGGGGCAGTTACCTGCACTCATTCACCTCAATAAAGTAACTT
CTTCATGGTC

hide sequence

RefSeq Acc Id:

XM_040278854 ⟹ XP_040134788

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,861,670 - 15,865,261 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005338209	(Get FASTA)	NCBI Sequence Viewer
	XP_040134788	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000023494.1
GenBank Protein	KAG3256140	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005338209 ⟸ XM_005338152

- UniProtKB:

I3NGJ7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSRRPAPQPFQQPEKPGRVRRRKTRRERNALVGSRRGSRQDLMAPWNPVAPRDPVAPSASKLV
VITQGRLSREHRGLFNHEVKSLDVARLLSSGSLESGTLFLQTKPSPNPGRVQEPEQSKGKENQV
PGDLGPGPPHSPELPCLGKLLGELQCQLILPQAFPRRNLVQEARDIIVGNLQACHGCVPDLSLV
LRGCHPPLPGTKPGISEKQRMTPSWINSPEQAPREERQRRLRGTKELTFSMPHTSSPPVTHRVS
LVPPGGPWPPTLPSLPSPSGAAWGPPTAFDLLKSIWLVATPPLPRPWAVGPPQPLPQPLSPLLP
RTSALDWSPSPLAPLPSLSWVVAQSSPEAWSFPPMRLY

hide sequence

RefSeq Acc Id:	XP_040134788 ⟸ XM_040278854
- UniProtKB:	I3NGJ7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000023494 ⟸ ENSSTOT00000024733

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000024823	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024733.1	UniProtKB/TrEMBL
InterPro	Pro-rich_19	UniProtKB/TrEMBL
NCBI Gene	Prr19	ENTREZGENE
PANTHER	PROLINE-RICH PROTEIN 19	UniProtKB/TrEMBL
	PTHR37346	UniProtKB/TrEMBL
Pfam	Pro-rich_19	UniProtKB/TrEMBL
UniProt	I3NGJ7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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