Tmc7 (transmembrane channel like 7) - Rat Genome Database

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Gene: Tmc7 (transmembrane channel like 7) Ictidomys tridecemlineatus
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Symbol: Tmc7
Name: transmembrane channel like 7
RGD ID: 12551080
Description: ENCODES a protein that exhibits ion channel inhibitor activity (inferred); mechanosensitive monoatomic ion channel activity (inferred); INVOLVED IN monoatomic ion transmembrane transport (inferred); sensory perception of mechanical stimulus (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane channel-like protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344116,949,150 - 116,994,829 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365015,047,011 - 5,113,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365015,048,138 - 5,077,927 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344116,949,150 - 116,994,829 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365015,047,011 - 5,113,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365015,048,138 - 5,077,927 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381618,983,934 - 19,063,942 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1618,983,934 - 19,063,942 (+)EnsemblGRCh38hg38GRCh38
GRCh371618,995,256 - 19,075,264 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361618,902,828 - 18,982,004 (+)NCBINCBI36Build 36hg18NCBI36
Build 341618,902,830 - 18,981,998NCBI
Celera1618,143,493 - 18,223,144 (+)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1617,531,965 - 17,612,658 (+)NCBIHuRef
CHM1_11619,082,536 - 19,162,517 (+)NCBICHM1_1
T2T-CHM13v2.01618,914,769 - 18,994,754 (+)NCBIT2T-CHM13v2.0
Tmc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397118,135,064 - 118,184,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7118,135,064 - 118,183,959 (-)EnsemblGRCm39 Ensembl
GRCm387118,535,841 - 118,584,829 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,535,841 - 118,584,736 (-)EnsemblGRCm38mm10GRCm38
MGSCv377125,679,358 - 125,728,200 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367118,326,993 - 118,375,835 (-)NCBIMGSCv36mm8
Celera7118,493,632 - 118,508,188 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map763.44NCBI
Tmc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,287,742 - 182,340,000 (-)NCBIGRCr8
mRatBN7.21172,853,531 - 172,905,796 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1172,854,658 - 172,905,824 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1181,168,329 - 181,218,246 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01188,354,648 - 188,404,572 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,084,438 - 181,134,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,193,233 - 188,245,546 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,195,416 - 188,245,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01195,142,160 - 195,191,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,761,053 - 176,811,206 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1170,632,759 - 170,682,796 (-)NCBICelera
Cytogenetic Map1q35NCBI
Tmc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554423,039,166 - 3,073,835 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554423,037,088 - 3,081,573 (-)NCBIChiLan1.0ChiLan1.0
TMC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21820,247,014 - 20,326,005 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11624,770,476 - 24,849,511 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01619,245,759 - 19,325,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11619,092,150 - 19,168,041 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1619,092,280 - 19,166,704 (+)Ensemblpanpan1.1panPan2
TMC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1625,855,162 - 25,917,214 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl625,855,223 - 25,907,762 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha627,217,187 - 27,270,613 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0626,009,709 - 26,071,990 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl626,009,755 - 26,063,568 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1625,826,418 - 25,871,793 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0625,704,090 - 25,766,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0626,093,860 - 26,156,029 (+)NCBIUU_Cfam_GSD_1.0
TMC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl326,306,219 - 26,360,880 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1326,306,176 - 26,360,887 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2326,967,113 - 27,007,200 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1517,279,532 - 17,345,801 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl517,279,900 - 17,346,414 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606812,584,745 - 12,654,026 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247822,695,480 - 2,740,510 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247822,693,344 - 2,739,678 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021725429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000003880   ⟹   ENSSTOP00000003479
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365015,047,011 - 5,092,680 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000035565   ⟹   ENSSTOP00000030750
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365015,047,011 - 5,113,590 (-)Ensembl
RefSeq Acc Id: XM_021725429   ⟹   XP_021581104
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344116,949,150 - 116,994,829 (-)NCBI
SpeTri2.0NW_0049365015,048,138 - 5,077,927 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021581104 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003479.3
  ENSSTOP00000030750.1
GenBank Protein KAG3259410 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021581104   ⟸   XM_021725429
- UniProtKB: I3M369 (UniProtKB/TrEMBL),   A0A287DB16 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000030750   ⟸   ENSSTOT00000035565
Ensembl Acc Id: ENSSTOP00000003479   ⟸   ENSSTOT00000003880
Protein Domains
TMC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003863 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003880.3 UniProtKB/TrEMBL
  ENSSTOT00000035565.1 UniProtKB/TrEMBL
InterPro TMC UniProtKB/TrEMBL
  TMC_dom UniProtKB/TrEMBL
NCBI Gene Tmc7 ENTREZGENE
PANTHER PTHR23302 UniProtKB/TrEMBL
  TRANSMEMBRANE CHANNEL-LIKE PROTEIN 7 UniProtKB/TrEMBL
Pfam TMC UniProtKB/TrEMBL
UniProt A0A287DB16 ENTREZGENE, UniProtKB/TrEMBL
  I3M369 ENTREZGENE, UniProtKB/TrEMBL