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Gene: Fam220a (family with sequence similarity 220 member A) Ictidomys tridecemlineatus

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Symbol:

Fam220a

Name:

family with sequence similarity 220 member A

RGD ID:

12524267

Description:

ENCODES a protein that exhibits STAT family protein binding (inferred); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); protein dephosphorylation (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,778,284 - 139,792,475 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	152,827 - 165,171 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936750	165,233 - 166,026 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	152,866 - 166,982 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular signal transduction (ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

protein dephosphorylation (ISO)

Cellular Component

acrosomal vesicle (ISO)

cytoplasm (ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

STAT family protein binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Fam220a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	139,778,284 - 139,792,475 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	152,827 - 165,171 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936750	165,233 - 166,026 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	152,866 - 166,982 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM220A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	6,329,411 - 6,348,967 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	6,329,411 - 6,348,981 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	6,369,042 - 6,388,598 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	6,335,565 - 6,355,115 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	6,346,541 - 6,366,073 (+)	NCBI		Celera
Cytogenetic Map	7	p22.1	NCBI
HuRef	7	6,240,692 - 6,260,128 (-)	NCBI		HuRef
CHM1_1	7	6,368,638 - 6,388,157 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	6,448,805 - 6,468,359 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	6,415,393 - 6,434,949 (-)	NCBI

Fam220a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	143,534,475 - 143,550,286 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	143,534,463 - 143,550,286 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	143,548,720 - 143,564,531 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	143,548,706 - 143,564,531 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	5	143,548,708 - 143,564,531 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	144,309,574 - 144,325,393 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	143,804,343 - 143,820,144 (+)	NCBI		MGSCv36	mm8
Celera	5	140,595,338 - 140,611,144 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	82.27	NCBI

Fam220a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	16,111,593 - 16,127,584 (-)	NCBI		GRCr8
mRatBN7.2	12	10,997,969 - 11,013,962 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	10,997,740 - 11,016,501 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	11,805,254 - 11,821,251 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	12,428,542 - 12,444,538 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	11,453,553 - 11,469,566 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	13,043,038 - 13,067,043 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	13,043,038 - 13,067,341 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	15,088,130 - 15,110,348 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	11,341,686 - 11,343,288 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	12,792,738 - 12,808,579 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

Fam220a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955460	13,329,417 - 13,335,986 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100683001
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	11,692,532 - 11,711,505 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	13,317,709 - 13,336,687 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	11,693,112 - 11,712,092 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	11,569,420 - 11,588,404 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	11,548,525 - 11,567,497 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	11,775,631 - 11,795,213 (-)	NCBI		UU_Cfam_GSD_1.0

LOC110260073
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	4,821,544 - 4,848,691 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FAM220A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	15,538,085 - 15,560,278 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	15,539,047 - 15,539,826 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666102	516,560 - 537,110 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam220a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624740	31,009,409 - 31,010,170 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005339710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000022933 ⟹ ENSSTOP00000019560

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936750	152,827 - 165,171 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000035877 ⟹ ENSSTOP00000025281

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936750	165,233 - 166,026 (+)	Ensembl

RefSeq Acc Id:

XM_005339710 ⟹ XP_005339767

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	139,778,284 - 139,792,475 (-)	NCBI
SpeTri2.0	NW_004936750	152,866 - 166,982 (+)	NCBI

Sequence:

show sequence

CGTATGGAGTCTTCTGCAAGGGGCTGACCCGCACACTGCTTATCTTCTTCGACCTGGCCTGGCG
GCTGCGTATCAACTTCCCCTACCTCTACATCGTGGCTTCCATGATGCTTAACGTGCGCCTGCAG
GTTCATATTGAGATCCACTGAAGGCCCTCCCCTGATTGACAAAGGTGTTACCCCAGGCTCTCTG
CATCAAAGAATACAAAACATGAGGGACGGAGGAGGGACCCTCGGCATCTGCCTGATAGAAGCAA
AGGGGGAGGGAGGAGATGACTGGTACAAACAATTATGTAGCCTTAAGAAAAGAACACAGAAGGA
GAGCCCTTGCCCAGCAGATATACCTTTCTGGATGGATAAGTCTGCAGTTGATGTAAATGGAAAT
TCACAGAATGAGGTGTTATCATTGGAAATGAAAAACGATCTGAGTGACACTGATCTCTTGCTTC
ACAATGGCAACAAAGAGCTTCCATATTTGAAGAAATCAATGGGAAGAAATTTAGCTCCCGTAGC
TGCTCCAACCAAGGCCATGGGTCTGTCCTTTGCTCCTGCAGAAGAGCATCTTGCTGGGGTGTTC
CTCAGTGTTGGGGACGCTCTGGGAAGGGACTGGCTAAGAAGTGGGCCCAGAGCCATGGACAACC
AGAGAGGACAGTGCCCCAAAGGAGAGCCCTGGGTGTCAGGACAGCCAGTCCATCCGAAACTGTG
GGAAATGGTAGTTTTTAAGGGTGAACCACCAAGTGCTCTTCACGAGGGACTAGGCTCTGAGTCA
GAACTGTCTCACCTGCGTTCTGTGCTGCTTGCAACACTGCACTCCTGTCCTGAAGTACTTCTAG
AGGACAAGACAAGATGTGTTTTCCTTGACCATTTAAAGCCCATGTTTTCAGAGCAAACAACAGA
GTATAAGAAAATGCTTTCATGTGTAAAAAGTACCTCAAATGGTCTGGAGATAACACTGGGGTTA
CTGGCTCTACAGCCTTTTCAATTAGCAAATCCCTTATGCCATAGTTAAGGTACAAGCAGAACAA
TAAAATAGTAGATTAATTTTAGAAGTTGTCCTAGAATGATTTCTTTCCCATTAAGTCTGGATGC
AGACAGCTTAGCTGCTCAGATCCTGCTTTGACCAGACAGAGGAAGTCAAGTTCACTCACCAAAA
ACTGATCGATGCAGAAGGAATTTTTAGCATGTTTTAAATTGTGCTTAAAAGATACTCAGAATTG
GTAAAACCCTTTCAGGTGATTATTGATATATCCAGTTTAATATCAGATAAGCACATGGTGATTT
AACATGAAATTCTTTATGTATCTCGAGATCTCTATCCATTTTAAAGGGCTATTGTCCCAGACAT
CATCTTGTCTCCTCAACTCGTCTCTGATCACCTCCTGGAAGTGAATATTTGTAAAGTCTACCTA
CTGTATTTTTATTAAACCTTGCTAAGCTCATGGCAAGCTGTTGCCATTTCTGCATCTCATAGAA
TAATTTTGGTCTGCAGCAAAATCTGACTTCTTTTCTCATACTCCTTCCACTTGAAATGCTGTTT
AAATGGAGGCCCTATGGTGAAAGTTGCAATATTAAATTTAATCATCTCAAACTAGGAACCCTAG
CAGTGTTACCCTAAGTAAAAAGGAACTTGAGACTCTTTGCTCTGGCTCAGATGTAGAGAGGCAA
ATCAAGAACTTCCTTTACAAAGTCCTAAGAGTTGATGTCTTTTAAGATTTTTCTGAAGTGACTC
CTTTTGTTGTTCATTGATAATTTTATTAATAAAGGTCATTTAAAAGTGTAAGTTTTTAAGGACT
CCCAAAGTGAGACTTAAAACAGCTATTTGGGGGATAACTGATTGCATATATCAATTTATATTGT
GTGCTAAATTACTATGCCATGTGCTATTTTAGTGTTTGGGGAAAATGCAGAATAAAATCTGTTC
TTTAGCATAATAAATGTCATATTTTACGTGTGTACTCTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005339767	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000019560.2
	ENSSTOP00000025281.1
GenBank Protein	KAG3260055	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005339767 ⟸ XM_005339710

- UniProtKB:

A0A287CVH6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRDGGGTLGICLIEAKGEGGDDWYKQLCSLKKRTQKESPCPADIPFWMDKSAVDVNGNSQNEVL
SLEMKNDLSDTDLLLHNGNKELPYLKKSMGRNLAPVAAPTKAMGLSFAPAEEHLAGVFLSVGDA
LGRDWLRSGPRAMDNQRGQCPKGEPWVSGQPVHPKLWEMVVFKGEPPSALHEGLGSESELSHLR
SVLLATLHSCPEVLLEDKTRCVFLDHLKPMFSEQTTEYKKMLSCVKSTSNGLEITLGLLALQPF
QLANPLCHS

hide sequence

Ensembl Acc Id:

ENSSTOP00000025281 ⟸ ENSSTOT00000035877

Ensembl Acc Id:

ENSSTOP00000019560 ⟸ ENSSTOT00000022933

Protein Domains

SIPAR

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000028517	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00000033953	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000022933.2	UniProtKB/TrEMBL
	ENSSTOT00000035877.1	UniProtKB/TrEMBL
InterPro	FAM220A	UniProtKB/TrEMBL
	SIPAR	UniProtKB/TrEMBL
	SMIM10	UniProtKB/TrEMBL
NCBI Gene	Fam220a	ENTREZGENE
PANTHER	FAMILY WITH SEQUENCE SIMILARITY 220 MEMBER A	UniProtKB/TrEMBL
	PROTEIN FAM220A	UniProtKB/TrEMBL
	PTHR31980	UniProtKB/TrEMBL
	SMALL INTEGRAL MEMBRANE PROTEIN 10	UniProtKB/TrEMBL
Pfam	DUF4560	UniProtKB/TrEMBL
	FAM220	UniProtKB/TrEMBL
UniProt	A0A287CVH6	ENTREZGENE, UniProtKB/TrEMBL
	I3N5B4_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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