Abcf3 (ATP binding cassette subfamily F member 3) - Rat Genome Database

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Gene: Abcf3 (ATP binding cassette subfamily F member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Abcf3
Name: ATP binding cassette subfamily F member 3
RGD ID: 12500451
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family F member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,578,541 - 119,588,161 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,669,738 - 5,680,043 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,670,395 - 5,680,043 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abcf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,578,541 - 119,588,161 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,669,738 - 5,680,043 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,670,395 - 5,680,043 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,186,199 - 184,194,005 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,186,095 - 184,194,012 (+)EnsemblGRCh38hg38GRCh38
GRCh373183,903,987 - 183,911,793 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,386,557 - 185,394,489 (+)NCBINCBI36Build 36hg18NCBI36
Build 343185,386,587 - 185,394,495NCBI
Celera3182,345,574 - 182,353,503 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,310,757 - 181,318,688 (+)NCBIHuRef
CHM1_13183,868,268 - 183,876,199 (+)NCBICHM1_1
T2T-CHM13v2.03186,995,138 - 187,002,952 (+)NCBIT2T-CHM13v2.0
Abcf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,367,309 - 20,380,357 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,367,327 - 20,380,129 (+)EnsemblGRCm39 Ensembl
GRCm381620,548,556 - 20,561,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,548,577 - 20,561,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,548,676 - 20,561,676 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361620,462,205 - 20,474,363 (+)NCBIMGSCv36mm8
Celera1621,112,678 - 21,125,678 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.46NCBI
Abcf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,844,863 - 93,856,595 (-)NCBIGRCr8
mRatBN7.21180,340,476 - 80,352,211 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,339,977 - 80,352,211 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,062,967 - 89,074,696 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,716,387 - 81,728,116 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,777,452 - 80,789,181 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01184,026,206 - 84,037,938 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,026,207 - 84,037,938 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,098,518 - 87,110,250 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,570,495 - 82,582,228 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,628,084 - 82,639,817 (-)NCBI
Celera1179,179,874 - 79,191,606 (-)NCBICelera
Cytogenetic Map11q23NCBI
Abcf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,268,615 - 23,281,041 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,271,925 - 23,280,988 (-)NCBIChiLan1.0ChiLan1.0
ABCF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,057,454 - 182,065,326 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,062,171 - 182,070,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,221,309 - 181,229,662 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,704,188 - 189,712,143 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,704,188 - 189,712,143 (+)Ensemblpanpan1.1panPan2
ABCF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,082,911 - 17,089,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,082,987 - 17,089,911 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,170,094 - 21,181,250 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03416,990,979 - 17,002,135 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3416,990,997 - 17,002,133 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,028,322 - 17,039,479 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,024,247 - 17,035,405 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,254,475 - 17,265,633 (+)NCBIUU_Cfam_GSD_1.0
ABCF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,105,344 - 122,113,559 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,102,939 - 122,112,896 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,545,271 - 131,552,818 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,232,161 - 5,240,012 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,227,836 - 5,239,958 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606314,011,181 - 14,019,084 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,376,045 - 72,384,077 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473072,372,773 - 72,384,077 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008312   ⟹   ENSSTOP00000007450
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365785,669,738 - 5,680,043 (-)Ensembl
RefSeq Acc Id: XM_005331057   ⟹   XP_005331114
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602119,578,541 - 119,588,161 (-)NCBI
SpeTri2.0NW_0049365785,670,395 - 5,680,043 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270207   ⟹   XP_040126141
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602119,578,541 - 119,585,905 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005331114 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126141 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007450.2
GenBank Protein KAG3271181 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005331114   ⟸   XM_005331057
- Peptide Label: isoform X1
- UniProtKB: I3MBE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126141   ⟸   XM_040270207
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000007450   ⟸   ENSSTOT00000008312
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008295 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008312.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC_tran_Xtn UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  ABCF_EF3_subfamily UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Abcf3 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 3 UniProtKB/TrEMBL
  ATP-BINDING TRANSPORT PROTEIN-RELATED UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/TrEMBL
  ABC_tran_Xtn UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3MBE5 ENTREZGENE, UniProtKB/TrEMBL