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Gene: Tctn2 (tectonic family member 2) Ictidomys tridecemlineatus

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Symbol:

Tctn2

Name:

tectonic family member 2

RGD ID:

12495624

Description:

INVOLVED IN cell projection organization (inferred); cilium assembly (inferred); protein localization to ciliary transition zone (inferred); ASSOCIATED WITH Autosomal Recessive Cutis Laxa (ortholog); autosomal recessive cutis laxa type IIA (ortholog); congenital disorder of glycosylation Il (ortholog); FOUND IN ciliary transition zone (inferred); MKS complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tectonic-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	158,310,657 - 158,336,824 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	1,142,598 - 1,168,881 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	1,142,608 - 1,168,755 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Autosomal Recessive Cutis Laxa (ISO)

autosomal recessive cutis laxa type IIA (ISO)

congenital disorder of glycosylation Il (ISO)

genetic disease (ISO)

Joubert syndrome (ISO)

Joubert syndrome 1 (ISO)

Joubert syndrome 24 (ISO)

Meckel syndrome (ISO)

Meckel syndrome 6 (ISO)

Meckel syndrome 8 (ISO)

microcephaly (ISO)

short chain acyl-CoA dehydrogenase deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell projection organization (IEA)

cilium assembly (IEA)

protein localization to ciliary transition zone (IEA)

smoothened signaling pathway (IEA)

Cellular Component

ciliary transition zone (IEA)

MKS complex (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tctn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	158,310,657 - 158,336,824 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	1,142,598 - 1,168,881 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	1,142,608 - 1,168,755 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCTN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	123,671,113 - 123,708,399 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	123,671,110 - 123,708,399 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	124,155,660 - 124,192,946 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	122,721,644 - 122,758,901 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	123,752,100 - 123,789,208 (+)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	121,116,926 - 121,154,126 (+)	NCBI		HuRef
CHM1_1	12	123,976,610 - 124,013,901 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	123,669,981 - 123,707,267 (+)	NCBI		T2T-CHM13v2.0

Tctn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	124,736,812 - 124,765,803 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	124,736,812 - 124,765,803 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	124,598,749 - 124,627,738 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	124,598,749 - 124,627,738 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	125,048,758 - 125,085,577 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	122,698,324 - 122,727,198 (+)	NCBI		MGSCv36	mm8
MGSCv36	5	124,859,402 - 124,888,267 (+)	NCBI		MGSCv36	mm8
Celera	5	121,675,604 - 121,704,272 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	63.68	NCBI

Tctn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	37,643,711 - 37,668,035 (-)	NCBI		GRCr8
mRatBN7.2	12	31,982,440 - 32,007,242 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	31,822,733 - 32,007,069 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	33,161,467 - 33,185,794 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	33,772,784 - 33,797,115 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	32,824,655 - 32,848,982 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,400,896 - 37,427,256 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,363,906 - 37,425,596 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	39,272,247 - 39,296,609 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	33,095,370 - 33,119,921 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	33,672,972 - 33,696,471 (-)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI

Tctn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	5,342,821 - 5,362,426 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	5,344,113 - 5,362,519 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCTN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	131,746,058 - 131,783,519 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	131,742,469 - 131,779,896 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	121,256,675 - 121,293,997 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	125,482,294 - 125,518,903 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	125,482,294 - 125,518,903 (+)	Ensembl	panpan1.1		panPan2

TCTN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	5,954,302 - 5,979,853 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	5,954,738 - 5,979,750 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	6,117,168 - 6,142,741 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	6,204,343 - 6,229,951 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	6,162,010 - 6,229,946 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	6,137,867 - 6,163,444 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	6,230,005 - 6,255,237 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	6,183,423 - 6,209,002 (-)	NCBI		UU_Cfam_GSD_1.0

TCTN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	29,297,881 - 29,332,720 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	29,301,848 - 29,333,063 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	30,994,144 - 31,025,325 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCTN2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	119,000,590 - 119,038,601 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	119,000,632 - 119,038,607 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	126,237,359 - 126,275,320 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tctn2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	23,439,647 - 23,470,470 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005329548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005735724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000006207 ⟹ ENSSTOP00000005550

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936558	1,142,598 - 1,168,881 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000022041 ⟹ ENSSTOP00000019308

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936558	1,142,598 - 1,168,881 (-)	Ensembl

RefSeq Acc Id:

XM_005329548 ⟹ XP_005329605

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	158,310,659 - 158,336,824 (+)	NCBI
SpeTri2.0	NW_004936558	1,142,608 - 1,168,755 (-)	NCBI

Sequence:

show sequence

GACGGGGCGGCGGGTGCCGGGCCTTCCACGCTGGGCCCTTCCCGGCTTCTAGGGCTGGCCGGGC
TCCAGGCATGGGCGCTGCGACGGCGACCCCGCTCCTGCTGGGGCTCCTCCTGCAGGGCGTCCTG
AGGCCGCTGCGGGCGGACCCGGTTTTCATCCCGCCTTTCATTCGAATGTCCGGTAGTGCGGTCA
GCGCGGCCCTGGTCGGAGGCCCCGAGGAGGTGACTGTGTCCCTGGCCCCGCTGCAGGTCGAGGC
TGGAGTGTTGCCAGTTCCAACTTGTGATGTGCTGAGCAATGAGACAGGAGACTGGAGTGTGACT
GTGACCCCAAGTGTGAACATGTTGGAGGTGACAGTGAGGCTGAAGAGGGGTCTGGAGCAGTGTT
CCTCCAATGAGACAGAGTCCTTCTCTGAGTCCCCTTGTATTGTCCAGACTCTTCTGGTTTCAGC
ATCTCACAATTCATCCTGCTTAGCACATCTCCTCATTCAGGTGGAAATTTTTGCCAACTCTTCT
CTGACCCAGGGTGCATCAGAGAACATGACTGTTATTCCTAACCAGGTGTATCAGCCCCTTGGTC
CTTGTCCTTGCAATTTAACGGCTGGTGCCTGTGATGTTCGCTGCTGCTGTGACCAGGAGTGCTC
GGCAGAGGCCAGAGACCTGTTCAGACTGTCCTGCTTCACTGGTGTTTTTGGAGGAGACGTCAAT
CCTCCATTTGATCAGCTGTGTGCTGTTGGGAAGCCTGGCCAGGTCCCCGACTGGTTCCCCTTCC
TGTGCGTGCAGTCACCTCTGGCCAACTCACCCTTCCTCGGTCACTTCTATCATGGTGCCATTTC
CCCTGGGCACCACCCTGCCTTTGAAGCGCATCTGCATGCTGAGCCACAGGGCTTTCCAGACTTC
GGCTACAAACAAGGAGATCCCGTCCTGACCGTCAACAAGGGGTATTTTACTGTTCCGCAGGTGT
CCCTGGCTGGGCAGTGTCTTCGGGATGCCCCTGTAGCATTCCTTCGGAATTTTGATGATAAATG
CACTACTAATTTGGAAGTGTACCAAGAACGAGATGGCATTATCAACTCGAAGATAAAGAGCAGC
ACCATGGGAGGCATAGTTACACCAACGGTGACCTATGAGGAAGCAGGTGACCTCGACAAATTCA
TCACCAATACAGAAGTACTTTTAGGCCACGGATCAGCCTCCAGATATGTGAATGTGGAAGAGCA
TTATATTTTCAGATGGAATAATAACACAATCAGTGAGATAAATGTCAAGATTATCAGGGCAGAA
GTCAGTGCCCTCCAGAAAGGAGTAATAACTCAGAGATTTACTGTGAAGTTTTTAAGCCACAGCA
GTGGTAATGAAGAGGAGATGTCTGGAAACCCAGGTTACCACCTTGGCAAGCCTATCCGAGCCCT
TCATACCGACAGGATGAACAACGTTACCACTTTACACCTTTGGCAGCCAGCTGGAAGGGGTTTG
TGCACATCAGCAACTTTTAAACCCATTTTATTTGGAGAAAATGTACTCTCTGGGTGCCTCTTGG
AAGTTGGAATTAATGAAAACTGTACTCAGTTCAGGCAGAATGTCATTGAAAGATTTGATTCGTT
AATACAGGCGACTCATGTGGCCATGAGAGGCAACTCTAATTACGGCAATCTGAGTGACGGCTGG
CTGGAAATAATACGTGTAGATGCTCCTGATGCCCACATGGGCCCGTTTTTTAGCAGCGCGTTGG
GCACCTGCCCGGATGTTCCTGCTCAGCTCCACATCCGCATCCTCATCTGTGACGCTGGCGCGGT
GGAAGGGGTGGCTCAGCAGCAGATACTCGGCATCCAGACGAGGCTCTCTACAGTGACCTGGCAG
TACCAGTGTGGACTTACTTGTGAAGATAAGGCTGACTTTTTCCCTATCAGTGCATCAGTCCAGT
TTATTAAAATACCTGCACAGTTACCGCGACCCCTGACAAGATTTCAGATCAATTTTACAGAGTA
CGACTGTAATAGAAATGCGGTGTGTTGGCCACAACTTCTATATCCATTGACCCAGCATTATCAA
GGGGAACCTTATGCCCAGTGTATTGCCAAGGGCTTACTGTTGGTGTCCCTCCTCCTGTTGGCTG
TGTTCCTCAGCCACCCCTGGATCAGAACAGCAAAGCTGGGCACTCGACCACTATGACTAAGTCC
CTTTAAAAACCGTAGCCCGGGCTCCAGTGACTGTGACAGTCCTGTATCCCTCTCCCAAACATTT
TAATAAATGTTTTTTATTTTTGT

hide sequence

RefSeq Acc Id:

XM_021729259 ⟹ XP_021584934

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	158,310,659 - 158,336,824 (+)	NCBI
SpeTri2.0	NW_004936558	1,142,608 - 1,168,755 (-)	NCBI

Sequence:

show sequence

GACGGGGCGGCGGGTGCCGGGCCTTCCACGCTGGGCCCTTCCCGGCTTCTAGGGCTGGCCGGGC
TCCAGGCATGGGCGCTGCGACGGCGACCCCGCTCCTGCTGGGGCTCCTCCTGCAGGGCGTCCTG
AGGCCGCTGCGGGCGGACCCGGTTTTCATCCCGCCTTTCATTCGAATGTCCGGTAGTGCGGTCA
GCGCGGCCCTGGTCGGAGGCCCCGAGGAGGTGACTGTGTCCCTGGCCCCGCTGCAGGTCGAGGC
TGGAGTGTTGCCAGTTCCAACTTGTGATGTGCTGAGCAATGAGACAGGAGACTGGAGTGTGACT
GTGACCCCAAGTGTGAACATGTTGGAGGTGACAGTGAGGCTGAAGAGGGGTCTGGAGCAGTGTT
CCTCCAATGAGACAGAGTCCTTCTCTGAGTCCCCTTGTATTGTCCAGACTCTTCTGGTTTCAGC
ATCTCACAATTCATCCTGCTTAGCACATCTCCTCATTCAGGTGGAAATTTTTGCCAACTCTTCT
CTGACCCAGGGTGCATCAGAGAACATGACTGTTATTCCTAACCAGGTGTATCAGCCCCTTGGTC
CTTGTCCTTGCAATTTAACGGCTGGTGCCTGTGATGTTCGCTGCTGCTGTGACCAGGAGTGCTC
GGCAGAGGCCAGAGACCTGTTCAGACTGTCCTGCTTCACTGGTGTTTTTGGAGGAGACGTCAAT
CCTCCATTTGATCAGCTGTGTGCTGTTGGGAAGCCTGGCCAGGTCCCCGACTGGTTCCCCTTCC
TGTGCGTGCAGTCACCTCTGGCCAACTCACCCTTCCTCGGTCACTTCTATCATGGTGCCATTTC
CCCTGGGCACCACCCTGCCTTTGAAGCGCATCTGCATGCTGAGCCACAGGGCTTTCCAGACTTC
GGCTACAAACAAGGAGATCCCGTCCTGACCGTCAACAAGGGGTATTTTACTGTTCCGCAGGTGT
CCCTGGCTGGGCAGTGTCTTCGGGATGCCCCTGTAGCATTCCTTCGGAATTTTGATGATAAATG
CACTACTAATTTGGAAGTGTACCAAGAACGAGATGGCATTATCAACTCGAAGATAAAGAGCAGC
ACCATGGGAGGCATAGTTACACCAACGGTGACCTATGAGGAAGCAGGTGACCTCGACAAATTCA
TCACCAATACAGAAGTACTTTTAGGCCACGGATCAGCCTCCAGATATGTGAATGTGGAAGAGCA
TTATATTTTCAGATGGAATAATAACACAATCAGTGAGATAAATGTCAAGATTATCAGGGCAGAA
GTCAGTGCCCTCCAGAAAGGAGTAATAACTCAGAGATTTACTGTGAAGTTTTTAAGCCACAGCA
GTGGTAATGAAGAGGAGATGTCTGGAAACCCAGCTGGAAGGGGTTTGTGCACATCAGCAACTTT
TAAACCCATTTTATTTGGAGAAAATGTACTCTCTGGGTGCCTCTTGGAAGTTGGAATTAATGAA
AACTGTACTCAGTTCAGGCAGAATGTCATTGAAAGATTTGATTCGTTAATACAGGCGACTCATG
TGGCCATGAGAGGCAACTCTAATTACGGCAATCTGAGTGACGGCTGGCTGGAAATAATACGTGT
AGATGCTCCTGATGCCCACATGGGCCCGTTTTTTAGCAGCGCGTTGGGCACCTGCCCGGATGTT
CCTGCTCAGCTCCACATCCGCATCCTCATCTGTGACGCTGGCGCGGTGGAAGGGGTGGCTCAGC
AGCAGATACTCGGCATCCAGACGAGGCTCTCTACAGTGACCTGGCAGTACCAGTGTGGACTTAC
TTGTGAAGATAAGGCTGACTTTTTCCCTATCAGTGCATCAGTCCAGTTTATTAAAATACCTGCA
CAGTTACCGCGACCCCTGACAAGATTTCAGATCAATTTTACAGAGTACGACTGTAATAGAAATG
CGGTGTGTTGGCCACAACTTCTATATCCATTGACCCAGCATTATCAAGGGGAACCTTATGCCCA
GTGTATTGCCAAGGGCTTACTGTTGGTGTCCCTCCTCCTGTTGGCTGTGTTCCTCAGCCACCCC
TGGATCAGAACAGCAAAGCTGGGCACTCGACCACTATGACTAAGTCCCTTTAAAAACCGTAGCC
CGGGCTCCAGTGACTGTGACAGTCCTGTATCCCTCTCCCAAACATTTTAATAAATGTTTTTTAT
TTTTGT

hide sequence

RefSeq Acc Id:

XM_040289574 ⟹ XP_040145508

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	158,310,658 - 158,336,824 (+)	NCBI

RefSeq Acc Id:

XM_040289575 ⟹ XP_040145509

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	158,310,658 - 158,336,824 (+)	NCBI

RefSeq Acc Id:

XM_040289576 ⟹ XP_040145510

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	158,310,963 - 158,336,824 (+)	NCBI

RefSeq Acc Id:

XR_005735724

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	158,310,657 - 158,336,356 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005329605	(Get FASTA)	NCBI Sequence Viewer
	XP_021584934	(Get FASTA)	NCBI Sequence Viewer
	XP_040145508	(Get FASTA)	NCBI Sequence Viewer
	XP_040145509	(Get FASTA)	NCBI Sequence Viewer
	XP_040145510	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005550.3
	ENSSTOP00000019308.2

RefSeq Acc Id:	XP_005329605 ⟸ XM_005329548
- Peptide Label:	isoform X1
- UniProtKB:	I3M7G2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGAATATPLLLGLLLQGVLRPLRADPVFIPPFIRMSGSAVSAALVGGPEEVTVSLAPLQVEAGV LPVPTCDVLSNETGDWSVTVTPSVNMLEVTVRLKRGLEQCSSNETESFSESPCIVQTLLVSASH NSSCLAHLLIQVEIFANSSLTQGASENMTVIPNQVYQPLGPCPCNLTAGACDVRCCCDQECSAE ARDLFRLSCFTGVFGGDVNPPFDQLCAVGKPGQVPDWFPFLCVQSPLANSPFLGHFYHGAISPG HHPAFEAHLHAEPQGFPDFGYKQGDPVLTVNKGYFTVPQVSLAGQCLRDAPVAFLRNFDDKCTT NLEVYQERDGIINSKIKSSTMGGIVTPTVTYEEAGDLDKFITNTEVLLGHGSASRYVNVEEHYI FRWNNNTISEINVKIIRAEVSALQKGVITQRFTVKFLSHSSGNEEEMSGNPGYHLGKPIRALHT DRMNNVTTLHLWQPAGRGLCTSATFKPILFGENVLSGCLLEVGINENCTQFRQNVIERFDSLIQ ATHVAMRGNSNYGNLSDGWLEIIRVDAPDAHMGPFFSSALGTCPDVPAQLHIRILICDAGAVEG VAQQQILGIQTRLSTVTWQYQCGLTCEDKADFFPISASVQFIKIPAQLPRPLTRFQINFTEYDC NRNAVCWPQLLYPLTQHYQGEPYAQCIAKGLLLVSLLLLAVFLSHPWIRTAKLGTRPL hide sequence

RefSeq Acc Id:	XP_021584934 ⟸ XM_021729259
- Peptide Label:	isoform X2
- UniProtKB:	I3N4L2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGAATATPLLLGLLLQGVLRPLRADPVFIPPFIRMSGSAVSAALVGGPEEVTVSLAPLQVEAGV LPVPTCDVLSNETGDWSVTVTPSVNMLEVTVRLKRGLEQCSSNETESFSESPCIVQTLLVSASH NSSCLAHLLIQVEIFANSSLTQGASENMTVIPNQVYQPLGPCPCNLTAGACDVRCCCDQECSAE ARDLFRLSCFTGVFGGDVNPPFDQLCAVGKPGQVPDWFPFLCVQSPLANSPFLGHFYHGAISPG HHPAFEAHLHAEPQGFPDFGYKQGDPVLTVNKGYFTVPQVSLAGQCLRDAPVAFLRNFDDKCTT NLEVYQERDGIINSKIKSSTMGGIVTPTVTYEEAGDLDKFITNTEVLLGHGSASRYVNVEEHYI FRWNNNTISEINVKIIRAEVSALQKGVITQRFTVKFLSHSSGNEEEMSGNPAGRGLCTSATFKP ILFGENVLSGCLLEVGINENCTQFRQNVIERFDSLIQATHVAMRGNSNYGNLSDGWLEIIRVDA PDAHMGPFFSSALGTCPDVPAQLHIRILICDAGAVEGVAQQQILGIQTRLSTVTWQYQCGLTCE DKADFFPISASVQFIKIPAQLPRPLTRFQINFTEYDCNRNAVCWPQLLYPLTQHYQGEPYAQCI AKGLLLVSLLLLAVFLSHPWIRTAKLGTRPL hide sequence

RefSeq Acc Id:	XP_040145508 ⟸ XM_040289574
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040145509 ⟸ XM_040289575
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040145510 ⟸ XM_040289576
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSSTOP00000019308 ⟸ ENSSTOT00000022041

Ensembl Acc Id:

ENSSTOP00000005550 ⟸ ENSSTOT00000006207

Protein Domains

Tectonic

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000006197	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006207.3	UniProtKB/TrEMBL
	ENSSTOT00000022041.2	UniProtKB/TrEMBL
InterPro	Tectonic	UniProtKB/TrEMBL
	Tectonic_dom	UniProtKB/TrEMBL
NCBI Gene	Tctn2	ENTREZGENE
PANTHER	PTHR14611	UniProtKB/TrEMBL
	TECTONIC-2	UniProtKB/TrEMBL
Pfam	DUF1619	UniProtKB/TrEMBL
UniProt	I3M7G2	ENTREZGENE, UniProtKB/TrEMBL
	I3N4L2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM