Advanced Search (OLGA)

Gene: Zc3hav1l (ZC3HAV1 like) Ictidomys tridecemlineatus

Analyze

Symbol:

Zc3hav1l

Name:

ZC3HAV1 like (Ensembl:zinc finger CCCH-type containing, antiviral 1 like)

RGD ID:

12487177

Description:

ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); RASopathy (ortholog); FOUND IN cytosol (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger CCCH-type antiviral protein 1-like; zinc finger CCCH-type containing, antiviral 1 like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	15,903,124 - 15,914,003 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936592	3,302,528 - 3,316,769 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936592	3,305,813 - 3,316,761 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

RASopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IEA)

References

Genomics

Comparative Map Data

Zc3hav1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	15,903,124 - 15,914,003 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936592	3,302,528 - 3,316,769 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936592	3,305,813 - 3,316,761 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3HAV1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	139,021,498 - 139,036,042 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	139,025,706 - 139,036,042 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	138,710,452 - 138,720,788 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	138,360,992 - 138,371,315 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	133,448,242 - 133,458,565 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI
HuRef	7	133,020,321 - 133,030,640 (-)	NCBI		HuRef
CHM1_1	7	138,644,192 - 138,654,515 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	140,334,406 - 140,348,950 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	138,054,670 - 138,064,994 (-)	NCBI

Zc3hav1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	38,264,329 - 38,276,194 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	38,264,331 - 38,276,194 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	38,287,394 - 38,299,259 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	38,287,396 - 38,299,259 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	38,237,394 - 38,249,259 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	38,221,480 - 38,228,867 (-)	NCBI		MGSCv36	mm8
Celera	6	38,268,132 - 38,279,973 (-)	NCBI		Celera
Cytogenetic Map	6	B1	NCBI
cM Map	6	17.71	NCBI

Zc3hav1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	67,957,250 - 67,972,540 (-)	NCBI		GRCr8
mRatBN7.2	4	66,994,192 - 67,003,207 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	66,994,199 - 67,001,620 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	4	65,988,820 - 66,003,450 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	65,990,564 - 66,002,444 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	65,803,996 - 65,817,907 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	65,824,919 - 65,830,927 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	66,100,553 - 66,127,447 (-)	NCBI
Celera	4	62,014,949 - 62,023,210 (-)	NCBI		Celera
Cytogenetic Map	4	q23	NCBI

Zc3hav1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955494	3,991,597 - 4,000,176 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955494	3,991,591 - 4,001,484 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZC3HAV1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	175,835,535 - 175,850,229 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	27,844,367 - 27,860,930 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	130,985,125 - 130,995,225 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	143,472,599 - 143,482,680 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	143,472,771 - 143,482,267 (-)	Ensembl	panpan1.1		panPan2

ZC3HAV1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	9,669,051 - 9,678,857 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	9,669,503 - 9,675,773 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	10,509,436 - 10,520,627 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	9,587,790 - 9,598,968 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	9,587,671 - 9,597,335 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	9,536,649 - 9,545,651 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	9,379,864 - 9,388,900 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	9,453,240 - 9,464,430 (+)	NCBI		UU_Cfam_GSD_1.0

ZC3HAV1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	10,593,184 - 10,611,031 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	10,592,544 - 10,612,414 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	11,073,863 - 11,102,791 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZC3HAV1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	107,750,180 - 107,760,170 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	107,750,807 - 107,759,799 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666072	4,580,406 - 4,589,947 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005332413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000005647 ⟹ ENSSTOP00000005053

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936592	3,302,528 - 3,316,769 (-)	Ensembl

RefSeq Acc Id:

XM_005332413 ⟹ XP_005332470

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	15,903,130 - 15,914,003 (+)	NCBI
SpeTri2.0	NW_004936592	3,305,813 - 3,316,761 (-)	NCBI

Sequence:

show sequence

TTTATTTAATGGAACATATCCAAAGTAGTATCCTTTTAACCTGTGATTCATATAAAGATATTGA
GCTATTTTACATTCTTTGTTTATCTGAAATCTTCCAAATCCAGTGTGTGTATTTCACCCATCGC
ATCTCAGCTGGGACTGGCCACATTTCTAGTGCTCTGCAGCCACCTGTGGCTGGCGGCCACCTCC
TTGGCGACGGTCCCCTACCAAGGACCTAAAGCAGCCCAGCCATTCACCTCCTACCGCCTTACCT
ATTTCATCTGCTTTGCAGCCCCTACTAGTTTTACTTGCAAAGCTCTGGTTTGCCTGTCTCTTTT
GTGACAAGGACTCACCCTGAATGGTGCCAGGATAGGACAGACATTCAATAAGCGTCCATCCCTT
CTTGAATCCGTGCCCAGCAGACATCGGGAACCTGGGCCGTCCTCTCACCCTCCGGGGCTGCCCT
CGCCCTTCCTTTCCCAGGCCGGTCCCTGGAATGTGGCTGGAAACCGTGGACGTGACTGGGAGGA
GTCTGGCCTCCTCGGGTTTCGCGCGGCGCGCACAGGGACGCGGCCGCCGGCCATGGCGGACCTC
ACGGTGTGCTCCTTCCTCACCAAGGTGCTGTGCGCCAACGGCGGCCGCATGTTCCTGCAGGACC
TGCGCGGCCACGTGGAGCTGTCGGAGGCGAAGCTCCGGGACGTGCTGCAGCGGGCCGGGCCCGA
GCGCTTCCTGCTGCAGGAGGTGGAGATGAAGGAGGGCCTCTGGGACGCCGAGGCGGAGGCGGCG
GCGGGCGCGGGCGGCGCGGGCAGCGGCGGCGGCGCCTCGGCCTGGAGGGTGGTGGCCGTGTCCT
CCGCGCGCCTCTGCGCCCGCTACCAGCGCGGGGAGTGCCAGGCCTGCGACCAGCTGCACTTCTG
CCGACGGCACATGCTGGGCAAGTGCCCCCACCGCGACTGCTGGTCTACCTGTACCCTTTCTCAT
GATATCCACACACCTGTCAACATCCAAGTCCTGAAAAACCACGGGATTTTTGGCCTCAATGAAG
CCCAGCTTCGGATCCTGCTTTTGCAGAATGACCCCTGCCTTTTGCCAGAGGTCTGTTTGCTGTA
CAACAAAGGTGGGGATCCCCTGTATGGTTACTGCAACCTCAAGGATAAATGCACCAAGTTCCAC
GTGTGCAAAGCCTTCGTCAGGGGAGAGTGCAAGCTGCAGACCTGCAAACGGTCCCATCAGCTCA
TTCATGCTACAGCCCTGAAGTTGCTTCAGGAGCAAGGACTGAGTATTCCAAGTGTCGTTAATTT
TCAGATCATTTCTGCCTACAAGCATATGGAGCTGCACAAGATGCTTGAAAACAAAGATAACTCA
GCTACTGAGTGTTCACAGGGCCTTGAAAAACAGAGAACACAGGAGGCCAGGGCTGGAGAAGGCA
GGCCTCTGGTCCCCCTCCCTACTCAGTCAGCCAGGAAGCCCTGCCCAGGTAAACCGTGAAGGGC
ACCAGTGAAGCAAGAAGCTTGTTCATCTTGGAAGACCTGAAAGCAAGTCTTCTGCTGAGCTTCA
GTTTGTAACCATTTGTTCTTTTAGTCATTTCTTAATAATGGTCATCAATAGCTACCTCACAGCT
TATTGTGAGAGCTAAAGGTGGGAGGATAAAATTTGGCATGGGTGGCTGGGGATGAGGTTGGACA
TGAAGCAGGCAAAGAGAAGGTAAAATTTGAGCGCAGAGGGTTCAGTCCAGGGCAAATCCTGAAG
ATGCAGCTTCTGCAGTTCCTGAGCATCTTCCCCAGCCTGGGCAGATGGAGCTCTTCAAGTGGTA
AATTTCTGCTGACTTCTGTGGTCTGACCAATGATTTTGTCCATGTAATCAGTTTACATAGATCC
ATACGCTTTGCACGGTTTTCTGCTTAGGCATTTCATAAGTATCATTCCATTTTGTTCACATTGA
TCACACATAATCTTTTTTTTGCACAGATACATTAATATATCATAGTTCATCTACCTCCCTTATT
CTGGGATATTTCAACTCTTAACAAATTTTGAATTTATCTTTCTATAAAATATACACAGTATTGA
ATTTGTAAAGCCATGCTTTACTTTTGCTTAGCTTACAGGTGCTAAATGATAATGTGTTTTGGTT
TGCATTTCTCTAAATGTATGTGAGTGAATAGTATTAACTGCCTTGTGTGGGTTCTCTTTTGTGT
ACTGTATATGTGGCCTTTTATTGCTGGGCCCTCTGGGCCGACATGGAGCTCCGTGATTTCATAA
AAGAATGTCATCCATACTGTGTCCAAGTTTTGTGCATCCATCCTTGGCCTGCACCACAGACTAT
GTAACCTTTGGGTTCCTGTCAAAAATTTCTACCTCAGCCTGTCTATTTTTTATCTTTTATTGAG
CTTTTGCTAAGCCCAGCTGCTATAGTTTGAAGGATGGGTAGTTCATCCATTACTCTGTAACTCT
TCTTTCTGTGGATGCAGATGGACCAAGAAAAATCTACCTGCTTCACCCATTTCATGTGGACTTC
CCTCTTCCTCCCCGTTCCCTCTTCTGTCTTCTCCTGTGTATCCTGCTGTCTTTATCAAGTTAGT
GTAGATGTCACGTTCTTTGTTTTTATCAAGGGGTACCACAGAGGCAGGTGTATGAATCCTTTGC
TGTGTGTATTTTAGTCATATTTCCAAATGTCCTTGTGTAAAGTACTTTCTTAATTTTTTTTTTT
GCAATAACACAATGTGAGAAAAAGGGACAATATAGTAGCTTTTATAAAACTAAATTTATTTAAT
TTTGAGAAAACTTATGTTTTCATTTTGAGAAAAACTGAAATGCTCTTCTATTGAGTTGGGGGAA
TGCAAAAATGTTTTCAAGTGATAAATTTCTGTGTTTTCTCCTAAAAGGGCAATATGATTCATAT
AACTTATGATAGTTTTTTTTACTGTTGTTGTCAACAACAGTATTTCTGAAAAGCCTGATGTTCT
GCATATTTTGTTTTTTCTTTCTTTATTATTTTTTTCCTAGT

hide sequence

RefSeq Acc Id:

XM_040291366 ⟹ XP_040147300

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	15,903,124 - 15,912,477 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005332470	(Get FASTA)	NCBI Sequence Viewer
	XP_040147300	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005053.3

RefSeq Acc Id:	XP_005332470 ⟸ XM_005332413
- Peptide Label:	isoform X1
- UniProtKB:	I3M6F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADLTVCSFLTKVLCANGGRMFLQDLRGHVELSEAKLRDVLQRAGPERFLLQEVEMKEGLWDAE AEAAAGAGGAGSGGGASAWRVVAVSSARLCARYQRGECQACDQLHFCRRHMLGKCPHRDCWSTC TLSHDIHTPVNIQVLKNHGIFGLNEAQLRILLLQNDPCLLPEVCLLYNKGGDPLYGYCNLKDKC TKFHVCKAFVRGECKLQTCKRSHQLIHATALKLLQEQGLSIPSVVNFQIISAYKHMELHKMLEN KDNSATECSQGLEKQRTQEARAGEGRPLVPLPTQSARKPCPGKP hide sequence

RefSeq Acc Id:	XP_040147300 ⟸ XM_040291366
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000005053 ⟸ ENSSTOT00000005647

Protein Domains

ZAP helix turn helix N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005656	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000005647.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	ZAP_HTH	UniProtKB/TrEMBL
	Zc3hav1-like	UniProtKB/TrEMBL
NCBI Gene	Zc3hav1l	ENTREZGENE
PANTHER	PTHR47621	UniProtKB/TrEMBL
	ZINC FINGER CCCH-TYPE ANTIVIRAL PROTEIN 1-LIKE	UniProtKB/TrEMBL
Pfam	HTH_53	UniProtKB/TrEMBL
UniProt	I3M6F9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-10-22	Zc3hav1l	ZC3HAV1 like	Zc3hav1l	zinc finger CCCH-type containing, antiviral 1 like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar