LOC101956585 (lysozyme-like protein 1) - Rat Genome Database

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Gene: LOC101956585 (lysozyme-like protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101956585
Name: lysozyme-like protein 1
RGD ID: 12482681
Description: ENCODES a protein that exhibits lysozyme activity (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysozyme-like 1; Lyzl1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093449,061,182 - 9,072,612 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366133,613,910 - 3,623,104 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC101956585
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093449,061,182 - 9,072,612 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366133,613,910 - 3,623,104 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYZL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381029,289,070 - 29,318,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1029,289,061 - 29,318,328 (+)EnsemblGRCh38hg38GRCh38
GRCh371029,577,999 - 29,600,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361029,617,996 - 29,640,164 (+)NCBINCBI36Build 36hg18NCBI36
Build 341029,618,029 - 29,640,160NCBI
Celera1029,343,639 - 29,365,823 (+)NCBICelera
Cytogenetic Map10p12.1-p11.23NCBI
HuRef1029,297,931 - 29,320,046 (+)NCBIHuRef
CHM1_11029,578,304 - 29,600,473 (+)NCBICHM1_1
T2T-CHM13v2.01029,320,734 - 29,350,003 (+)NCBIT2T-CHM13v2.0
Lyzl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,165,862 - 4,182,232 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,165,832 - 4,182,232 (+)EnsemblGRCm39 Ensembl
GRCm38184,165,832 - 4,182,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,165,832 - 4,182,232 (+)EnsemblGRCm38mm10GRCm38
MGSCv37184,165,830 - 4,182,234 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36184,165,830 - 4,182,234 (+)NCBIMGSCv36mm8
Celera184,212,713 - 4,229,280 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map182.57NCBI
Lyzl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81758,225,664 - 58,239,120 (-)NCBIGRCr8
mRatBN7.21753,530,437 - 53,543,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1753,530,442 - 53,543,866 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1756,698,446 - 56,712,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01760,701,381 - 60,715,164 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01754,859,503 - 54,873,266 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01756,255,613 - 56,269,245 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1756,255,608 - 56,269,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01754,292,574 - 54,306,206 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41762,058,344 - 62,071,768 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1749,523,538 - 49,536,962 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
LOC102016078
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542921,543,970 - 21,562,921 (+)NCBIChiLan1.0ChiLan1.0
LOC100976701
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2841,961,912 - 41,984,017 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11041,967,239 - 41,989,273 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01029,442,419 - 29,464,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11029,797,709 - 29,820,438 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1029,797,709 - 29,820,438 (+)Ensemblpanpan1.1panPan2
LOC487083
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,911,318 - 16,929,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha214,407,481 - 14,425,174 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0215,152,776 - 15,170,530 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1214,596,809 - 14,614,500 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0214,483,684 - 14,501,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0214,756,648 - 14,774,348 (-)NCBIUU_Cfam_GSD_1.0
LYZL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1928,897,347 - 28,919,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605134,966,072 - 34,987,931 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyzl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248052,468,979 - 2,483,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005334288   ⟹   XP_005334345
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093449,061,182 - 9,072,612 (+)NCBI
SpeTri2.0NW_0049366133,613,910 - 3,623,104 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006136.3
GenBank Protein KAG3257425 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005334345   ⟸   XM_005334288
- UniProtKB: I3M8P0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Glycosyl hydrolases family 22 (GH22)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006872 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006863.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.530.10 UniProtKB/TrEMBL
InterPro Glyco_hydro_22 UniProtKB/TrEMBL
  Glyco_hydro_22_CS UniProtKB/TrEMBL
  Glyco_hydro_22_lys UniProtKB/TrEMBL
  Lysozyme-like_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC101956585 ENTREZGENE
PANTHER PTHR11407 UniProtKB/TrEMBL
  PTHR11407:SF62 UniProtKB/TrEMBL
Pfam Lys UniProtKB/TrEMBL
PRINTS LYSOZYME UniProtKB/TrEMBL
  LYZLACT UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F22_1 UniProtKB/TrEMBL
  GLYCOSYL_HYDROL_F22_2 UniProtKB/TrEMBL
SMART LYZ1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53955 UniProtKB/TrEMBL
UniProt I3M8P0 ENTREZGENE, UniProtKB/TrEMBL