LOC101956585 (lysozyme-like protein 1) - Rat Genome Database

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Gene: LOC101956585 (lysozyme-like protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101956585
Name: lysozyme-like protein 1
RGD ID: 12482681
Description: ENCODES a protein that exhibits lysozyme activity (inferred); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (inferred); FOUND IN acrosomal vesicle (inferred); sperm flagellum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysozyme-like 1; Lyzl1
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093449,061,182 - 9,072,612 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366133,613,910 - 3,623,104 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005334288   ⟹   XP_005334345
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093449,061,182 - 9,072,612 (+)NCBI
SpeTri2.0NW_0049366133,613,910 - 3,623,104 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006136.3
GenBank Protein KAG3257425 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005334345   ⟸   XM_005334288
- UniProtKB: I3M8P0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Glycosyl hydrolases family 22 (GH22)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006872 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006863.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.530.10 UniProtKB/TrEMBL
InterPro Glyco_hydro_22 UniProtKB/TrEMBL
  Glyco_hydro_22_CS UniProtKB/TrEMBL
  Glyco_hydro_22_lys UniProtKB/TrEMBL
  Lysozyme-like_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC101956585 ENTREZGENE
PANTHER PTHR11407 UniProtKB/TrEMBL
  PTHR11407:SF62 UniProtKB/TrEMBL
Pfam Lys UniProtKB/TrEMBL
PRINTS LYSOZYME UniProtKB/TrEMBL
  LYZLACT UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F22_1 UniProtKB/TrEMBL
  GLYCOSYL_HYDROL_F22_2 UniProtKB/TrEMBL
SMART LYZ1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53955 UniProtKB/TrEMBL
UniProt I3M8P0 ENTREZGENE, UniProtKB/TrEMBL