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Gene: Rgp1 (RGP1 homolog, RAB6A GEF complex partner 1) Ictidomys tridecemlineatus

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Symbol:

Rgp1

Name:

RGP1 homolog, RAB6A GEF complex partner 1

RGD ID:

12482088

Description:

ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred); small GTPase binding (inferred); INVOLVED IN positive regulation of GTPase activity (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN cytosol (inferred); membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RAB6A-GEF complex partner protein 2; retrograde Golgi transport protein RGP1 homolog; RGP1 retrograde golgi transport homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	167,194,778 - 167,203,354 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	3,742,596 - 3,750,742 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	3,742,590 - 3,746,371 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

anauxetic dysplasia (ISO)

autosomal recessive distal hereditary motor neuronopathy 2 (ISO)

distal arthrogryposis type 1A (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ISO)

galactosemia (ISO)

hyperphosphatasia with impaired intellectual development syndrome 2 (ISO)

paraplegia (ISO)

primary ciliary dyskinesia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of protein catabolic process (IEA)

positive regulation of GTPase activity (ISO)

retrograde transport, endosome to Golgi (IEA)

Cellular Component

cytosol (IEA)

membrane (IEA)

plasma membrane (IEA)

protein-containing complex (IEA)

Ric1-Rgp1 guanyl-nucleotide exchange factor complex (IEA)

Molecular Function

guanyl-nucleotide exchange factor activity (IEA)

protein binding (ISO)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Rgp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	167,194,778 - 167,203,354 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	3,742,596 - 3,750,742 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	3,742,590 - 3,746,371 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RGP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	35,749,287 - 35,790,428 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	35,749,287 - 35,758,585 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	35,749,284 - 35,758,582 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	35,739,203 - 35,742,871 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	35,682,828 - 35,686,815 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	35,704,897 - 35,708,883 (+)	NCBI		HuRef
CHM1_1	9	35,749,681 - 35,753,668 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	35,769,968 - 35,779,266 (+)	NCBI		T2T-CHM13v2.0

Rgp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	43,578,735 - 43,587,487 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	43,578,715 - 43,587,487 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	43,578,735 - 43,587,487 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	43,578,715 - 43,587,487 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	43,591,607 - 43,600,359 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	43,600,029 - 43,608,587 (+)	NCBI		MGSCv36	mm8
Celera	4	43,612,724 - 43,621,477 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	23.05	NCBI

Rgp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	62,630,253 - 62,638,872 (+)	NCBI		GRCr8
mRatBN7.2	5	57,834,467 - 57,843,087 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,834,629 - 57,843,086 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	59,814,307 - 59,822,927 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	61,633,123 - 61,641,743 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	61,604,593 - 61,613,213 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	59,080,290 - 59,088,777 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	59,080,765 - 59,088,523 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	63,604,879 - 63,613,371 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	60,057,647 - 60,061,853 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	60,057,331 - 60,063,791 (+)	NCBI
Celera	5	56,415,170 - 56,423,657 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Rgp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	550,198 - 554,038 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	550,198 - 554,038 (-)	NCBI	ChiLan1.0	ChiLan1.0

RGP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	88,804,618 - 88,839,274 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	88,810,556 - 88,845,035 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	35,600,213 - 35,641,371 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	36,402,999 - 36,411,625 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	36,403,447 - 36,411,420 (+)	Ensembl	panpan1.1		panPan2

RGP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	52,276,151 - 52,280,482 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	52,277,189 - 52,281,639 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,843,619 - 50,853,283 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	53,340,989 - 53,350,395 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	53,341,692 - 53,350,658 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	51,885,532 - 51,895,196 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	51,869,058 - 51,878,720 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,571,203 - 52,580,867 (+)	NCBI		UU_Cfam_GSD_1.0

RGP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	236,468,320 - 236,477,683 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	236,468,115 - 236,478,347 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	264,193,418 - 264,197,794 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RGP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	44,843,368 - 44,851,896 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	44,848,379 - 44,851,942 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	41,948,022 - 41,956,690 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rgp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	5,041,653 - 5,045,466 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	5,027,481 - 5,055,392 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000005264 ⟹ ENSSTOP00000004719

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936524	3,742,596 - 3,746,214 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000032313 ⟹ ENSSTOP00000023998

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936524	3,743,092 - 3,750,742 (+)	Ensembl

RefSeq Acc Id:

XM_005326257 ⟹ XP_005326314

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	167,194,977 - 167,203,354 (+)	NCBI
SpeTri2.0	NW_004936524	3,742,590 - 3,746,371 (+)	NCBI

Sequence:

show sequence

AAAGGAAGTCCCGCCTCTGCCGTGCCACCTACGCCGCGGACGCCGCCGCGTACCTGGCCGGGTC
CCAGAGGGGCCCGGGCAGGTGAGGACCTTGGTGTCCTCAGACCCTGGTTTTGGACCGTGCGAGA
TCTGAATCCAGAGCTGCCATGATTGAAGTGGTAGCTGAGTTGAGCCGAGGTCCTGTATTTCTGG
CGGGGGAGGCACTGGAGTGTGTGGTAACCGTCACCAACCCCTTACCCCCTACAGCCACTTCTGC
ATCCAGTGAGGCTCTGGCTTGGGCCAGTGCCCAGATCCACTGCCAGTTCCATGCCAGTGAGAGT
CGAGTAGCACTGCCTCCCCCTGATTCTAGTCAGCCAGATGTCCAGCCTGACAGCCAGACTGTGT
TTCTGCCACACCGAGGTGAGAGAGGTCAGTGTATCCTTTCTACTCCACCAAAAATTCTATTTTG
TGACCTGAGGCTAGACCCTGGAGAGTCCAAATCATACTCCTACAGTGAAGTGCTGCCCATTGAG
GGACCACCCTCCTTTCGGGGTCAGTCGGTCAAGTACGTCTACAAACTGACTATTGGCTGCCAGC
GTGTCAACTCACCCATCACTTTACTTAGGGTCCCTTTGAGGGTTCTTGTACTGACTGGCCTTCA
AGATGTCCGGTTTCCCCAGGATGAGGCTGTAGCCCCATCTAGTCCATTTTTAGAGGAGGATGAG
GGTGGCAAGAAGGACTCATGGCTTGCTGAGCTGGCTGGGGAGCGTCTCATGGCTGCCACATCCT
GCCGTAGCCTCCATCTGTACAATATCAGTGATGGTCGAGGGAAAGTTGGGACATTTGGCATCTT
CAAATCTGTGTACAGACTTGGCGAGGACGTGGTGGGAACCTTAAACTTAGGGGAAGGAACTGTA
GCTTGTTTGCAGTTTTCAGTAAGCTTACAGACAGAGGAACGGGTACAGCCTGAATACCAGCGGC
GCCGGGGGACAGGGGGTGCTCCCTCTGTGTCCCATGTGACTCATGCCCGGCACCAGGAGTCCTG
CTTACATACTACCAGAACCAGCTTCTCTCTCCCCATCCCTCTCAGCTCTACCCCAGGCTTCTGC
ACTGCCATTGTGTCCCTGAAGTGGCGACTGCATTTTGAATTTGTAACATCCCGAGAACCAGGAT
TGGTACTCTTGCCCCCTGTGGAACAACCTGAACCTGCTACCTGGACAGGTCCTGAGCAAGTGCC
TGTAGACACCTTCAGCTGGGATCTTCCCATCAAGGTGCTGCCTACAAGCCCCACCCTGGCCTCA
TATGCTGCTCCAGGCCCCAGCACCAGCACCATAACCATCTGAAACTGGCCCATCTACCTACCAT
GACACTAGCTTCTTCAAGATTCTGAGAACTTAGCATGTGGACTCTAGCTGGAATCCACTTTTTC
CACCTAGGACCTAATAGCACAGACAATTGAGAGGCAGTCTGGGCTGGGAGTGTAGCTCAGTGGT
AGAGCATTTGTCTAGCATGTGCAAGGCCCTGGGTTCAATCCCAGTACGGACGA

hide sequence

RefSeq Acc Id:

XM_021726975 ⟹ XP_021582650

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	167,195,198 - 167,203,354 (+)	NCBI
SpeTri2.0	NW_004936524	3,742,740 - 3,746,371 (+)	NCBI

Sequence:

show sequence

GCTGGGACGTGAAGTCTTGAGGGAAGTGGGGTGTGGAGGCCAGCCTGTGATGGGGGGACTAAGC
CGGAGCTAAAGGGAGCCGGGGTCTGGGGACCAGAACGACGCCTTCCCCCTAGGCAGTACAGGGT
CAGCAGCCCCGTGACCCTCGTGTCCTGCCAGCTACCCAAATCCTGGCATTTTCCTGTGGTACCG
AGGTGTTGACCACCAGTCCTCTGACACTTATCTGAATCCAGAGCTGCCATGATTGAAGTGGTAG
CTGAGTTGAGCCGAGGTCCTGTATTTCTGGCGGGGGAGGCACTGGAGTGTGTGGTAACCGTCAC
CAACCCCTTACCCCCTACAGCCACTTCTGCATCCAGTGAGGCTCTGGCTTGGGCCAGTGCCCAG
ATCCACTGCCAGTTCCATGCCAGTGAGAGTCGAGTAGCACTGCCTCCCCCTGATTCTAGTCAGC
CAGATGTCCAGCCTGACAGCCAGACTGTGTTTCTGCCACACCGAGGTGAGAGAGGTCAGTGTAT
CCTTTCTACTCCACCAAAAATTCTATTTTGTGACCTGAGGCTAGACCCTGGAGAGTCCAAATCA
TACTCCTACAGTGAAGTGCTGCCCATTGAGGGACCACCCTCCTTTCGGGGTCAGTCGGTCAAGT
ACGTCTACAAACTGACTATTGGCTGCCAGCGTGTCAACTCACCCATCACTTTACTTAGGGTCCC
TTTGAGGGTTCTTGTACTGACTGGCCTTCAAGATGTCCGGTTTCCCCAGGATGAGGCTGTAGCC
CCATCTAGTCCATTTTTAGAGGAGGATGAGGGTGGCAAGAAGGACTCATGGCTTGCTGAGCTGG
CTGGGGAGCGTCTCATGGCTGCCACATCCTGCCGTAGCCTCCATCTGTACAATATCAGTGATGG
TCGAGGGAAAGTTGGGACATTTGGCATCTTCAAATCTGTGTACAGACTTGGCGAGGACGTGGTG
GGAACCTTAAACTTAGGGGAAGGAACTGTAGCTTGTTTGCAGTTTTCAGTAAGCTTACAGACAG
AGGAACGGGTACAGCCTGAATACCAGCGGCGCCGGGGGACAGGGGGTGCTCCCTCTGTGTCCCA
TGTGACTCATGCCCGGCACCAGGAGTCCTGCTTACATACTACCAGAACCAGCTTCTCTCTCCCC
ATCCCTCTCAGCTCTACCCCAGGCTTCTGCACTGCCATTGTGTCCCTGAAGTGGCGACTGCATT
TTGAATTTGTAACATCCCGAGAACCAGGATTGGTACTCTTGCCCCCTGTGGAACAACCTGAACC
TGCTACCTGGACAGGTCCTGAGCAAGTGCCTGTAGACACCTTCAGCTGGGATCTTCCCATCAAG
GTGCTGCCTACAAGCCCCACCCTGGCCTCATATGCTGCTCCAGGCCCCAGCACCAGCACCATAA
CCATCTGAAACTGGCCCATCTACCTACCATGACACTAGCTTCTTCAAGATTCTGAGAACTTAGC
ATGTGGACTCTAGCTGGAATCCACTTTTTCCACCTAGGACCTAATAGCACAGACAATTGAGAGG
CAGTCTGGGCTGGGAGTGTAGCTCAGTGGTAGAGCATTTGTCTAGCATGTGCAAGGCCCTGGGT
TCAATCCCAGTACGGACGA

hide sequence

RefSeq Acc Id:

XM_021726976 ⟹ XP_021582651

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	167,194,977 - 167,203,354 (+)	NCBI
SpeTri2.0	NW_004936524	3,742,590 - 3,746,371 (+)	NCBI

Sequence:

show sequence

AAAGGAAGTCCCGCCTCTGCCGTGCCACCTACGCCGCGGACGCCGCCGCGTACCTGGCCGGGTC
CCAGAGGGGCCCGGGCAGGTGAGGACCTTGGTGTCCTCAGACCCTGGTTTTGGACCGTGCGAGA
TCTGAATCCAGAGCTGCCATGATTGAAGTGGTAGCTGAGTTGAGCCGAGGTCCTGTATTTCTGG
CGGGGGAGGCACTGGAGTGTGTGGTAACCGTCACCAACCCCTTACCCCCTACAGCCACTTCTGC
ATCCAGTGAGGCTCTGGCTTGGGCCAGTGCCCAGATCCACTGCCAGTTCCATGCCAGTGAGAGT
CGAGTAGCACTGCCTCCCCCTGATTCTAGTCAGCCAGATGTCCAGCCTGACAGCCAGACTGTGT
TTCTGCCACACCGAGGCCTTCAAGATGTCCGGTTTCCCCAGGATGAGGCTGTAGCCCCATCTAG
TCCATTTTTAGAGGAGGATGAGGGTGGCAAGAAGGACTCATGGCTTGCTGAGCTGGCTGGGGAG
CGTCTCATGGCTGCCACATCCTGCCGTAGCCTCCATCTGTACAATATCAGTGATGGTCGAGGGA
AAGTTGGGACATTTGGCATCTTCAAATCTGTGTACAGACTTGGCGAGGACGTGGTGGGAACCTT
AAACTTAGGGGAAGGAACTGTAGCTTGTTTGCAGTTTTCAGTAAGCTTACAGACAGAGGAACGG
GTACAGCCTGAATACCAGCGGCGCCGGGGGACAGGGGGTGCTCCCTCTGTGTCCCATGTGACTC
ATGCCCGGCACCAGGAGTCCTGCTTACATACTACCAGAACCAGCTTCTCTCTCCCCATCCCTCT
CAGCTCTACCCCAGGCTTCTGCACTGCCATTGTGTCCCTGAAGTGGCGACTGCATTTTGAATTT
GTAACATCCCGAGAACCAGGATTGGTACTCTTGCCCCCTGTGGAACAACCTGAACCTGCTACCT
GGACAGGTCCTGAGCAAGTGCCTGTAGACACCTTCAGCTGGGATCTTCCCATCAAGGTGCTGCC
TACAAGCCCCACCCTGGCCTCATATGCTGCTCCAGGCCCCAGCACCAGCACCATAACCATCTGA
AACTGGCCCATCTACCTACCATGACACTAGCTTCTTCAAGATTCTGAGAACTTAGCATGTGGAC
TCTAGCTGGAATCCACTTTTTCCACCTAGGACCTAATAGCACAGACAATTGAGAGGCAGTCTGG
GCTGGGAGTGTAGCTCAGTGGTAGAGCATTTGTCTAGCATGTGCAAGGCCCTGGGTTCAATCCC
AGTACGGACGA

hide sequence

RefSeq Acc Id:

XM_040286026 ⟹ XP_040141960

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	167,194,993 - 167,203,354 (+)	NCBI

RefSeq Acc Id:

XM_040286027 ⟹ XP_040141961

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	167,194,778 - 167,203,354 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005326314	(Get FASTA)	NCBI Sequence Viewer
	XP_021582650	(Get FASTA)	NCBI Sequence Viewer
	XP_021582651	(Get FASTA)	NCBI Sequence Viewer
	XP_040141960	(Get FASTA)	NCBI Sequence Viewer
	XP_040141961	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004719.2
	ENSSTOP00000023998.1
GenBank Protein	KAG3287501	(Get FASTA)	NCBI Sequence Viewer
	KAG3287502	(Get FASTA)	NCBI Sequence Viewer
	KAG3287503	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005326314 ⟸ XM_005326257
- Peptide Label:	isoform X1
- UniProtKB:	I3M5S1 (UniProtKB/TrEMBL), A0A287CRU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPP PDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFR GQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDS WLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFS VSLQTEERVQPEYQRRRGTGGAPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSL KWRLHFEFVTSREPGLVLLPPVEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGP STSTITI hide sequence

RefSeq Acc Id:

XP_021582651 ⟸ XM_021726976

- Peptide Label:

isoform X2

- Sequence:

show sequence

MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPP
PDSSQPDVQPDSQTVFLPHRGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAAT
SCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQ
RRRGTGGAPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREP
GLVLLPPVEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI

hide sequence

RefSeq Acc Id:	XP_021582650 ⟸ XM_021726975
- Peptide Label:	isoform X1
- UniProtKB:	I3M5S1 (UniProtKB/TrEMBL), A0A287CRU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPP PDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFR GQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDS WLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFS VSLQTEERVQPEYQRRRGTGGAPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSL KWRLHFEFVTSREPGLVLLPPVEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGP STSTITI hide sequence

RefSeq Acc Id:	XP_040141961 ⟸ XM_040286027
- Peptide Label:	isoform X1
- UniProtKB:	I3M5S1 (UniProtKB/TrEMBL), A0A287CRU7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040141960 ⟸ XM_040286026
- Peptide Label:	isoform X1
- UniProtKB:	I3M5S1 (UniProtKB/TrEMBL), A0A287CRU7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000023998 ⟸ ENSSTOT00000032313

Ensembl Acc Id:

ENSSTOP00000004719 ⟸ ENSSTOT00000005264

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005260	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000005264.3	UniProtKB/TrEMBL
	ENSSTOT00000032313.1	UniProtKB/TrEMBL
InterPro	Rgp1	UniProtKB/TrEMBL
NCBI Gene	Rgp1	ENTREZGENE
PANTHER	PTHR12507	UniProtKB/TrEMBL
	RAB6A-GEF COMPLEX PARTNER PROTEIN 2	UniProtKB/TrEMBL
Pfam	Rgp1	UniProtKB/TrEMBL
UniProt	A0A287CRU7	ENTREZGENE, UniProtKB/TrEMBL
	I3M5S1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar