Zscan25 (zinc finger and SCAN domain containing 25) - Rat Genome Database

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Gene: Zscan25 (zinc finger and SCAN domain containing 25) Ictidomys tridecemlineatus
Analyze
Symbol: Zscan25
Name: zinc finger and SCAN domain containing 25
RGD ID: 12471466
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH essential hypertension (ortholog); myasthenia gravis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome P450 3A21-like; LOC110596887; LOC110597266; uncharacterized LOC110597266; zinc finger and SCAN domain-containing protein 25
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344137,862,194 - 138,054,749 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,891,230 - 1,903,060 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,890,646 - 1,901,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zscan25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344137,862,194 - 138,054,749 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,891,230 - 1,903,060 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,890,646 - 1,901,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,616,946 - 99,738,035 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,616,946 - 99,632,408 (+)EnsemblGRCh38hg38GRCh38
GRCh37799,214,569 - 99,270,165 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,052,507 - 99,067,976 (+)NCBINCBI36Build 36hg18NCBI36
Build 34798,859,221 - 98,873,178NCBI
Celera793,948,800 - 93,964,259 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,850,935 - 93,866,394 (+)NCBIHuRef
CHM1_1799,144,665 - 99,160,124 (+)NCBICHM1_1
T2T-CHM13v2.07100,851,926 - 100,993,657 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,574,366 - 98,589,825 (+)NCBI
Zscan25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,217,261 - 145,229,050 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,217,310 - 145,228,088 (+)EnsemblGRCm39 Ensembl
GRCm385145,280,451 - 145,292,240 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,280,500 - 145,291,278 (+)EnsemblGRCm38mm10GRCm38
MGSCv375146,044,212 - 146,052,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,534,008 - 145,544,996 (+)NCBIMGSCv36mm8
Celera5142,278,556 - 142,286,446 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map585.17NCBI
Zscan25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,441,458 - 14,451,919 (-)NCBIGRCr8
mRatBN7.2129,327,347 - 9,338,206 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,326,404 - 9,338,221 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,133,215 - 10,143,689 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,756,408 - 10,766,883 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,779,838 - 9,790,313 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,774,920 - 11,785,530 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,774,788 - 11,785,493 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,837,227 - 13,847,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,640,243 - 9,650,703 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,670,239 - 9,678,288 (-)NCBI
Celera1211,133,000 - 11,143,460 (-)NCBICelera
Cytogenetic Map12p11NCBI
Zscan25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546015,271,122 - 15,282,042 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546015,271,577 - 15,280,712 (+)NCBIChiLan1.0ChiLan1.0
ZSCAN25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,472,146 - 117,591,366 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,737,263 - 165,856,029 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,589,706 - 91,776,856 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,091,830 - 105,147,752 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,094,741 - 105,107,657 (+)Ensemblpanpan1.1panPan2
ZSCAN25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,930,569 - 9,942,371 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,931,501 - 9,939,584 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,554,468 - 11,568,247 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,928,554 - 9,942,341 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,930,578 - 9,942,289 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,791,955 - 9,805,424 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,776,585 - 9,790,373 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,010,971 - 10,024,762 (-)NCBIUU_Cfam_GSD_1.0
ZSCAN25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl36,569,304 - 6,579,150 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.136,563,495 - 6,583,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,539,095 - 13,551,772 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,538,395 - 13,550,889 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660702,758,401 - 2,851,590 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474033,053,773 - 33,073,674 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474033,053,712 - 33,070,751 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008179   ⟹   ENSSTOP00000007324
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367501,891,230 - 1,903,060 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000032496   ⟹   ENSSTOP00000025941
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367501,891,230 - 1,903,060 (+)Ensembl
RefSeq Acc Id: XM_005339743   ⟹   XP_005339800
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344138,042,307 - 138,054,749 (-)NCBI
SpeTri2.0NW_0049367501,890,646 - 1,901,501 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005730629
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344137,862,194 - 138,054,749 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005339800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007324.3
  ENSSTOP00000025941.1
RefSeq Acc Id: XP_005339800   ⟸   XM_005339743
- UniProtKB: I3MB61 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000007324   ⟸   ENSSTOT00000008179
Ensembl Acc Id: ENSSTOP00000025941   ⟸   ENSSTOT00000032496
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008185 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008179.3 UniProtKB/TrEMBL
  ENSSTOT00000032496.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zscan25 ENTREZGENE
PANTHER GENE 12845-RELATED UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287CXD5_ICTTR UniProtKB/TrEMBL
  I3MB61 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Zscan25  zinc finger and SCAN domain containing 25  LOC110596887  cytochrome P450 3A21-like  Data merged from RGD:12937669 737654 PROVISIONAL
2021-03-25 Zscan25  zinc finger and SCAN domain containing 25  LOC110597266  uncharacterized LOC110597266  Data merged from RGD:13046562 737654 PROVISIONAL